Last updated on 2014-09-12 01:48:00.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.5.0 | 3.03 | 48.10 | 51.13 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.5.0 | 2.96 | 46.98 | 49.93 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.5.0 | 107.37 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.5.0 | 101.42 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.5.0 | 88.06 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.5.0 | 11.00 | 67.00 | 78.00 | NOTE | |
| r-patched-linux-x86_64 | 1.5.0 | 3.22 | 51.83 | 55.06 | OK | |
| r-patched-solaris-sparc | 1.5.0 | 632.00 | NOTE | |||
| r-patched-solaris-x86 | 1.5.0 | 129.90 | NOTE | |||
| r-release-linux-ix86 | 1.5.0 | 4.58 | 67.13 | 71.71 | OK | |
| r-release-linux-x86_64 | 1.5.0 | 3.76 | 54.51 | 58.27 | OK | |
| r-release-osx-x86_64-mavericks | 1.5.0 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 1.5.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.5.0 | 13.00 | 80.00 | 93.00 | OK | |
| r-oldrel-windows-ix86+x86_64 | 1.5.0 | 13.00 | 76.00 | 89.00 | OK |
Version: 1.5.0
Check: R code for possible problems
Result: NOTE
backtransformOne.PrincipalCurveNormalization: no visible global
function definition for ‘backtransformPrincipalCurve’
backtransformOne.XYCurveNormalization: no visible global function
definition for ‘backtransformXYCurve’
calibrateC1C2.PairedPSCBS: no visible global function definition for
‘devSet’
callAllelicBalanceByBAFs.PairedPSCBS: no visible global function
definition for ‘findPeaksAndValleys’
callGenotypes.TotalFracBSnpData: no visible global function definition
for ‘findPeaksAndValleys’
callXXorXY.numeric: no visible global function definition for
‘findPeaksAndValleys’
drawC1C2Density.PairedPSCBS: no visible global function definition for
‘findPeaksAndValleys’
estimateDeshearingParameter.PSCBS: no visible global function
definition for ‘findPeaksAndValleys’
estimateDeshearingParameter_20130815.PSCBS: no visible global function
definition for ‘findPeaksAndValleys’
fitC1C2Densities.PairedPSCBS : <anonymous>: no visible global function
definition for ‘findPeaksAndValleys’
fitC1C2Peaks.PairedPSCBS: no visible global function definition for
‘devSet’
fitDeltaXYShearModel.matrix: no visible global function definition for
‘findPeaksAndValleys’
fitOne.MultiSourceCopyNumberNormalization: no visible global function
definition for ‘backtransformPrincipalCurve’
fitOne.MultiSourceCopyNumberNormalization: no visible global function
definition for ‘normalizeDifferencesToAverage’
fitOne.PrincipalCurveNormalization: no visible global function
definition for ‘fitPrincipalCurve’
fitOne.XYCurveNormalization: no visible global function definition for
‘fitXYCurve’
getAllNames.MultiSourceCopyNumberNormalization: no visible binding for
global variable ‘getNames’
getBacktransforms.PrincipalCurve: no visible global function definition
for ‘backtransformPrincipalCurve’
getOutputDataSet0.TotalCnSmoothing: no visible binding for global
variable ‘Class’
getOutputFileClass.TotalCnSmoothing: no visible binding for global
variable ‘Class’
getOutputFileSetClass.TotalCnSmoothing: no visible binding for global
variable ‘Class’
getPrincipalCurveEstimator.MultiSourceCopyNumberNormalization :
robustSmoother: no visible global function definition for
‘robustSmoothSpline’
getPrincipalCurveEstimator.MultiSourceCopyNumberNormalization : fcn: no
visible global function definition for ‘fitPrincipalCurve’
normalizeMirroredBAFsByRegions.matrix: no visible global function
definition for ‘fitXYCurve’
normalizeMirroredBAFsByRegions.matrix: no visible global function
definition for ‘devSet’
normalizeOne.MultiSourceCopyNumberNormalization: no visible global
function definition for ‘backtransformPrincipalCurve’
normalizePrincipalCurve.matrix: no visible global function definition
for ‘fitPrincipalCurve’
process.NaiveFracBGenotyping: no visible binding for global variable
‘AromaUnitGenotypeCallSet’
process.NaiveFracBGenotyping: no visible binding for global variable
‘AromaUnitSignalBinarySet’
smoothRawCopyNumbers.TotalCnBinnedSmoothing: no visible binding for
global variable ‘colBinnedSmoothing.matrix’
smoothRawCopyNumbers.TotalCnKernelSmoothing: no visible binding for
global variable ‘colKernelSmoothing.matrix’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 1.5.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘GLAD’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard