Last updated on 2014-09-12 01:48:00.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6 | 0.70 | 11.26 | 11.96 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.6 | 0.96 | 11.20 | 12.15 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.6 | 24.27 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.6 | 24.78 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.6 | 27.18 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.6 | 3.00 | 20.00 | 23.00 | NOTE | |
| r-patched-linux-x86_64 | 1.6 | 0.81 | 12.40 | 13.21 | NOTE | |
| r-patched-solaris-sparc | 1.6 | 176.60 | NOTE | |||
| r-patched-solaris-x86 | 1.6 | 37.90 | NOTE | |||
| r-release-linux-ix86 | 1.6 | 1.09 | 20.07 | 21.16 | NOTE | |
| r-release-linux-x86_64 | 1.6 | 0.74 | 12.64 | 13.38 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.6 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.6 | 3.00 | 23.00 | 26.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.6 | 3.00 | 25.00 | 28.00 | NOTE |
Version: 1.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gada’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6
Check: dependencies in R code
Result: NOTE
Missing or unexported object: ‘ggplot2::coord_transform’
Unexported objects imported by ':::' calls:
‘cghseg:::segmeanCO’ ‘ggplot2:::GeomRect’
See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6
Check: R code for possible problems
Result: NOTE
dnacopy.smoothvec : <anonymous>: no visible global function definition
for ‘smooth.CNA’
dnacopy.smoothvec : <anonymous>: no visible global function definition
for ‘segment’
dnacopy.smoothvec : <anonymous>: no visible binding for global variable
‘segment’
gada.results : <anonymous> : <anonymous>: no visible global function
definition for ‘WextIextToSegments’
geom_tallrect: no visible global function definition for ‘proto’
geom_tallrect : draw_groups: no visible global function definition for
‘unit’
run.pelt: no visible binding for global variable ‘cpt.mean’
runglad: no visible global function definition for ‘as.profileCGH’
runglad : <anonymous>: no visible binding for global variable ‘daglad’
runglad : <anonymous> : <anonymous>: no visible binding for global
variable ‘glad’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 1.6
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: ‘GLAD’ ‘gada’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86
Version: 1.6
Check: R code for possible problems
Result: NOTE
gada.results : <anonymous> : <anonymous>: no visible global function
definition for ‘WextIextToSegments’
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.6
Check: R code for possible problems
Result: NOTE
gada.results : <anonymous> : <anonymous>: no visible global function
definition for ‘WextIextToSegments’
runglad: no visible global function definition for ‘as.profileCGH’
runglad : <anonymous>: no visible binding for global variable ‘daglad’
runglad : <anonymous> : <anonymous>: no visible binding for global
variable ‘glad’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86
Version: 1.6
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: ‘GLAD’ ‘DNAcopy’ ‘gada’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.6
Check: R code for possible problems
Result: NOTE
dnacopy.smoothvec : <anonymous>: no visible global function definition
for ‘smooth.CNA’
dnacopy.smoothvec : <anonymous>: no visible global function definition
for ‘segment’
dnacopy.smoothvec : <anonymous>: no visible binding for global variable
‘segment’
gada.results : <anonymous> : <anonymous>: no visible global function
definition for ‘WextIextToSegments’
runglad: no visible global function definition for ‘as.profileCGH’
runglad : <anonymous>: no visible binding for global variable ‘daglad’
runglad : <anonymous> : <anonymous>: no visible binding for global
variable ‘glad’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'redoing-the-article.tex' failed.
LaTeX errors:
! LaTeX Error: File `fullpage.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
st/bams/vignettes/redoing-the-article.tex:5: ==> Fatal error occurred, no outp
ut PDF file produced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-release-osx-x86_64-mavericks