CRAN Package Check Results for Package wild1

Last updated on 2014-09-12 01:48:19.

Check Details

Version: 1.09
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘chron’ ‘survival’ ‘sp’ ‘maptools’ ‘spatstat’ ‘ICSNP’ ‘ks’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.09
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘ICSNP’ ‘chron’ ‘ks’ ‘sp’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.09
Check: Rd files
Result: NOTE
    prepare_Rd: coyote.mort.Rd:25-26: Dropping empty section \details
    prepare_Rd: csm.Rd:32-34: Dropping empty section \details
    prepare_Rd: csm.Rd:72-73: Dropping empty section \examples
    prepare_Rd: gpc.to.Polygons.Rd:44-46: Dropping empty section \note
    prepare_Rd: plot.csm.Rd:110-111: Dropping empty section \note
    prepare_Rd: plot.csm.Rd:102-103: Dropping empty section \references
    prepare_Rd: point.in.Polygons.Rd:50-52: Dropping empty section \note
    prepare_Rd: point.in.Polygons.Rd:59-60: Dropping empty section \examples
    prepare_Rd: remove.holes.Rd:37-39: Dropping empty section \note
    prepare_Rd: remove.holes.Rd:43-45: Dropping empty section \seealso
    prepare_Rd: restrict.domain.Rd:64-66: Dropping empty section \note
    prepare_Rd: restrict.domain.Rd:56-57: Dropping empty section \references
    prepare_Rd: restrict.domain.Rd:70-72: Dropping empty section \seealso
    prepare_Rd: trim.xy.Rd:65-67: Dropping empty section \note
    prepare_Rd: trim.xy.Rd:71-73: Dropping empty section \seealso
    prepare_Rd: Polygons.to.ppp.rd:45-47: Dropping empty section \note
    prepare_Rd: Polygons.to.psp.rd:39-41: Dropping empty section \note
    prepare_Rd: hr.kde.rd:45-46: Dropping empty section \note
    prepare_Rd: hr.kde.rd:50-52: Dropping empty section \seealso
    prepare_Rd: hr.mcp.rd:42-43: Dropping empty section \references
    prepare_Rd: hr.mcp.rd:56-58: Dropping empty section \seealso
    prepare_Rd: n.risk.rd:42-43: Dropping empty section \note
    prepare_Rd: n.risk.rd:34-35: Dropping empty section \references
    prepare_Rd: n.risk.rd:47-48: Dropping empty section \examples
    prepare_Rd: plot.Polygons.rd:44-45: Dropping empty section \note
    prepare_Rd: plot.Polygons.rd:36-37: Dropping empty section \references
    prepare_Rd: ud.kde.rd:47-48: Dropping empty section \note
    prepare_Rd: ud.kde.rd:52-54: Dropping empty section \seealso
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.09
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in ‘inst/doc’:
     ‘csm.rnw’
    A ‘vignettes’ directory is required as from R 3.1.0
    and these will not be indexed nor checked
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.09
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘ChangeLog.txt’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.09
Check: Rd line widths
Result: NOTE
    Rd file 'partition.intervals.rd':
     \usage lines wider than 90 characters:
     partition.intervals(first,last,breaks,recurrent=TRUE,labels=NULL,id=NULL,event=NULL,no.event=NULL)
    
    Rd file 'restrict.domain.Rd':
     \usage lines wider than 90 characters:
     restrict.domain(x, y = NULL, domain, plot=TRUE, add=FALSE, col.in="salmon",col.out="gray", ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.09
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'gpclib'
    
    Depends: includes the non-default packages:
     'chron' 'survival' 'sp' 'maptools' 'spatstat' 'ICSNP' 'ks'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.09
Check: data for non-ASCII characters
Result: NOTE
     Error in .requirePackage(package) :
     unable to find required package 'gpclib'
     Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.09
Check: examples
Result: ERROR
    Running examples in 'wild1-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: gpc.to.Polygons
    > ### Title: Construct "gpc.poly" from "Polygons"
    > ### Aliases: gpc.to.Polygons Polygons.to.gpc
    >
    > ### ** Examples
    >
    > require(gpclib)
    Loading required package: gpclib
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gpclib'
    >
    > data(wica.gpc)
    > class(wica.gpc)
    [1] "gpc.poly"
    attr(,"package")
    [1] "gpclib"
    >
    > data(xy.elk)
    > mcp.poly <- hr.mcp(xy.elk)
    Warning in hr.mcp(xy.elk) : Missing values dropped
    > class(mcp.poly)
    [1] "Polygons"
    attr(,"package")
    [1] "sp"
    >
    > mcp.gpc <- Polygons.to.gpc(mcp.poly)
    Loading required package: gpclib
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called 'gpclib'
    [1] "Requires package 'gpclib'"
    [1] "'gpclib' is not free for commercial use"
    Error in getClass(Class, where = topenv(parent.frame())) :
     "gpc.poly" is not a defined class
    Calls: Polygons.to.gpc -> new -> getClass
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.09
Check: for old-style vignette sources
Result: NOTE
    Vignette sources only in 'inst/doc':
     'csm.rnw'
    A 'vignettes' directory will be required as from R 3.1.0
Flavor: r-oldrel-windows-ix86+x86_64