To cite package 'AFLPsim' in publications use:

Francisco Balao & Juan Luis García-Castaño(2014). AFLPsim: Hybrid simulation and genome scan for dominant markers.R package version 0.3-3.

Corresponding BibTeX entry:

  @Manual{AFLPsim-package,
    title = {AFLPsim: Hybrid simulation and genome scan for dominant
      markers},
    author = {Francisco Balao and Juan Luis García-Castaño},
    year = {2014},
    note = {R package version 0.3-3},
    url = {https://github.com/fbalao/AFLPsim},
  }