GCAI.bias: Guided Correction Approach for Inherited bias (GCAI.bias)

Many inherited biases and effects exists in RNA-seq due to both biological and technical effects. We observed the biological variance of testing target transcripts can influence the yield of sequencing reads, which might indicate a resource competition existing in RNA-seq. We developed this package to capture the bias depending on local sequence and perform the correction of this type of bias by borrowing information from spike-in measurement.

Version: 1.0
Depends: R (≥ 2.10)
Published: 2014-07-16
Author: Guoshuai Cai
Maintainer: Guoshuai Cai <GCAI.bioinfo at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: GCAI.bias results


Reference manual: GCAI.bias.pdf
Package source: GCAI.bias_1.0.tar.gz
Windows binaries: r-devel: GCAI.bias_1.0.zip, r-release: GCAI.bias_1.0.zip, r-oldrel: GCAI.bias_1.0.zip
OS X Snow Leopard binaries: r-release: GCAI.bias_1.0.tgz, r-oldrel: GCAI.bias_1.0.tgz
OS X Mavericks binaries: r-release: GCAI.bias_1.0.tgz