This package contains the functions that can be used to
analyze the PamChip microarray data. The package is mainly
useful in fitting semi-parametric mixed effects models while
accommodating various types of mean structures and correlation
structures present in Kinase activity profiling experiments.
The package can be used to visualize, cleaning Pam Chip data.
And also it can be used in model fitting, velocity estimating,
and testing the estimated velocities between the groups. The
PamGeneMixed package is built up as a software implementation
for the paper titled The Use of Semi-parametric Mixed Models to
Analyze PamChip Peptide Array Data: an Application to an
Oncology Experiment which is published in Bioinformatics
(2011).
| Version: |
1.03 |
| Depends: |
R (≥ 2.10), mgcv, gplots, utils, graphics, nlme, methods, stats, Biobase |
| Published: |
2013-04-04 |
| Author: |
Pushpike Thalikarathne, Ziv Shkedy, Dan Lin, Lieven Clement,
and Geert Verbeke |
| Maintainer: |
Pushpike Thalikarathne <Pushpike at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
PamGeneMixed results |