TBEST: Tree Branches Evaluated Statistically for Tightness

Our method introduces mathematically well-defined measures for tightness of branches in a hierarchical tree. Statistical significance of the findings is determined, for all branches of the tree, by performing permutation tests, optionally with generalized Pareto p-value estimation.

Version: 3.0
Depends: parallel, signal, fdrtool
Published: 2014-05-30
Author: Guoli Sun, Alex Krasnitz
Maintainer: Guoli Sun <gsun at cshl.edu>
License: GPL-2
NeedsCompilation: no
CRAN checks: TBEST results

Downloads:

Reference manual: TBEST.pdf
Package source: TBEST_3.0.tar.gz
Windows binaries: r-devel: TBEST_3.0.zip, r-release: TBEST_3.0.zip, r-oldrel: TBEST_3.0.zip
OS X Snow Leopard binaries: r-release: TBEST_3.0.tgz, r-oldrel: TBEST_3.0.tgz
OS X Mavericks binaries: r-release: TBEST_3.0.tgz
Old sources: TBEST archive