Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)
Version: | 1.99-7 |
Depends: | R (≥ 2.15.0), ape (≥ 3.0-11) |
Imports: | quadprog, igraph (≥ 0.6), Matrix, fastmatch |
Suggests: | parallel, rgl, seqLogo, seqinr, xtable, flashClust, phytools |
Published: | 2014-02-02 |
Author: | Klaus Schliep, Emmanuel Paradis |
Maintainer: | Klaus Schliep <klaus.schliep at gmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | yes |
Citation: | phangorn citation info |
Materials: | NEWS |
In views: | Genetics, Phylogenetics |
CRAN checks: | phangorn results |
Reference manual: | phangorn.pdf |
Vignettes: |
Ancestral sequence Reconstruction Constructing phylogenetic trees Advanced features |
Package source: | phangorn_1.99-7.tar.gz |
Windows binaries: | r-devel: phangorn_1.99-7.zip, r-release: phangorn_1.99-7.zip, r-oldrel: phangorn_1.99-7.zip |
OS X Snow Leopard binaries: | r-release: phangorn_1.99-7.tgz, r-oldrel: phangorn_1.99-7.tgz |
OS X Mavericks binaries: | r-release: phangorn_1.99-7.tgz |
Old sources: | phangorn archive |
Reverse imports: | coalescentMCMC, corHMM, OUwie, paleotree, phytools, poppr, RADami, recluster, SeqFeatR |