RTFBS identifies and scores possible Transcription Factor
Binding Sites and allows for FDR analysis and pruning. It supports
splitting of sequences based on size or a specified GFF, grouping
by G+C content, and specification of Markov model order. The heavy
lifting is done in C while all results are made available via R.
| Version: |
0.3.2 |
| Depends: |
stats |
| Imports: |
rphast |
| Published: |
2013-12-07 |
| Author: |
Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam
Siepel |
| Maintainer: |
Melissa Hubisz <mjhubisz at cornell.edu> |
| License: |
BSD_3_clause + file LICENSE |
| Copyright: |
The code in src/pcre is Copyright (c) 1997-2010 University
of Cambridge. All other code is Copyright (c) 2002-2011
University of California, Cornell University. |
| URL: |
http://compgen.bscb.cornell.edu/rtfbs |
| NeedsCompilation: |
yes |
| Materials: |
ChangeLog |
| CRAN checks: |
rtfbs results |