This package provides tools to analyze NGS DNA-sequencing from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
| Version: | 2.0.0 |
| Depends: | R (≥ 3.0.0), copynumber, parallel, squash |
| Published: | 2014-04-08 |
| Author: | Francesco Favero, Andrea M. Marquard, Tejal Joshi, Aron C. Eklund |
| Maintainer: | Francesco Favero <favero at cbs.dtu.dk> |
| License: | GPL-3 |
| URL: | http://cbs.dtu.dk/biotools/sequenza/, Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group |
| NeedsCompilation: | no |
| Citation: | sequenza citation info |
| Materials: | NEWS |
| CRAN checks: | sequenza results |
| Reference manual: | sequenza.pdf |
| Vignettes: |
Sequenza user guide sequenza SNP-array usage example |
| Package source: | sequenza_2.0.0.tar.gz |
| Windows binaries: | r-devel: sequenza_2.0.0.zip, r-release: sequenza_2.0.0.zip, r-oldrel: sequenza_2.0.0.zip |
| OS X Snow Leopard binaries: | r-release: sequenza_2.0.0.tgz, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: sequenza_2.0.0.tgz |
| Old sources: | sequenza archive |