sequenza: Analysis and visualization of tumor genome sequencing data

This package provides tools to analyze NGS DNA-sequencing from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Version: 2.0.0
Depends: R (≥ 3.0.0), copynumber, parallel, squash
Published: 2014-04-08
Author: Francesco Favero, Andrea M. Marquard, Tejal Joshi, Aron C. Eklund
Maintainer: Francesco Favero <favero at>
License: GPL-3
URL:, Mailing list:!forum/sequenza-user-group
NeedsCompilation: no
Citation: sequenza citation info
Materials: NEWS
CRAN checks: sequenza results


Reference manual: sequenza.pdf
Vignettes: Sequenza user guide
sequenza SNP-array usage example
Package source: sequenza_2.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: sequenza_2.0.0.tgz, r-oldrel: not available
OS X Mavericks binaries: r-release: sequenza_2.0.0.tgz
Old sources: sequenza archive