CRAN Package Check Results for Package SyNet

Last updated on 2014-10-10 15:49:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 1.20 34.33 35.53 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 1.05 33.30 34.35 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 70.64 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 63.06 NOTE
r-devel-osx-x86_64-clang 2.0 74.44 NOTE
r-devel-windows-ix86+x86_64 2.0 4.00 52.00 56.00 NOTE
r-patched-linux-x86_64 2.0 1.12 38.26 39.38 NOTE
r-patched-solaris-sparc 2.0 487.90 NOTE
r-patched-solaris-x86 2.0 102.60 NOTE
r-release-linux-ix86 2.0 1.53 47.80 49.33 NOTE
r-release-linux-x86_64 2.0 1.08 36.48 37.56 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-osx-x86_64-snowleopard 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 6.00 55.00 61.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 4.00 56.00 60.00 NOTE

Check Details

Version: 2.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘tcltk’ ‘tkrplot’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : savecleavogram : savefic: warning in jpeg(file =
     filename): partial argument match of ‘file’ to ‘filename’
    read.coord: no visible binding for global variable ‘Filters’
    
    Found the following assignments to the global environment:
    File ‘SyNet/R/cleavogram.r’:
     assign(tclvalue(outpartition), rslt, pos = 1)
    File ‘SyNet/R/creategrid.r’:
     assign(ReturnVal, outobj, envir = .GlobalEnv)
    File ‘SyNet/R/dotinfer.r’:
     assign(tclvalue(outputname), out, envir = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'SyNet-package.rd':
     \examples lines wider than 100 characters:
     # Run NAM method on the previously inferred sympatry network
    
    Rd file 'acshgral.rd':
     \examples lines wider than 100 characters:
     #Display relationships into a parenthetical notation. You can track the indices of the species in the
    
    Rd file 'gridinfer.rd':
     \examples lines wider than 100 characters:
     #are nested inside it. In a network analysis this kind of element will behave as intermediary node.
    
    Rd file 'reweight.rd':
     \examples lines wider than 100 characters:
     plot(unlist(ej),unlist(reweight(ej)), xlab = "Input matrix", ylab = "Reweighted matrix", main = "First reweighting")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : savecleavogram : savefic: warning in jpeg(file =
     filename): partial argument match of 'file' to 'filename'
    read.coord: no visible binding for global variable ‘Filters’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 2.0
Check: R code for possible problems
Result: NOTE
    cleavogram : savecleavogram : savefic: warning in jpeg(file =
     filename): partial argument match of 'file' to 'filename'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64