CRAN Package Check Results for Package curvHDR

Last updated on 2014-10-10 15:48:51.

Check Details

Version: 1.0-3
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘feature’ ‘flowCore’ ‘geometry’ ‘hdrcde’ ‘ks’ ‘misc3d’ ‘ptinpoly’
     ‘rgl’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.0-3
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0-3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘feature’ ‘flowCore’ ‘geometry’ ‘hdrcde’ ‘ks’ ‘misc3d’ ‘ptinpoly’
     ‘rgl’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘feature’ ‘flowCore’ ‘geometry’ ‘hdrcde’ ‘ks’ ‘misc3d’ ‘ptinpoly’
     ‘rgl’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported objects imported by ':::' calls:
     ‘flowCore:::inpolygon’ ‘misc3d:::t2ve’ ‘misc3d:::vertexTriangles’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    curvHDRfilter: no visible global function definition for ‘rgl.clear’
    curvHDRfilter: no visible global function definition for ‘rgl.bg’
    curvHDRfilter: no visible global function definition for ‘rgl.spheres’
    curvHDRfilter: no visible global function definition for
     ‘featureSignif’
    curvHDRfilter: no visible global function definition for ‘contour3d’
    curvHDRfilter: no visible global function definition for
     ‘updateTriangles’
    curvHDRfilter: no visible global function definition for
     ‘drawScene.rgl’
    curvHDRfilter: no visible global function definition for ‘convhulln’
    curvHDRfilter: no visible global function definition for ‘pip3d’
    curvHDRfilter: no visible global function definition for ‘hpi’
    curvHDRfilter: no visible global function definition for ‘Hpi.diag’
    curvHDRfilter: no visible global function definition for ‘kde’
    curvHDRfilter: no visible global function definition for ‘hdr’
    curvHDRfilter: no visible global function definition for ‘dpik’
    curvHDRfilter: no visible global function definition for
     ‘contourLevels’
    plot.curvHDRfilter: no visible global function definition for
     ‘drawScene.rgl’
    plot3D: no visible global function definition for ‘rgl.clear’
    plot3D: no visible global function definition for ‘rgl.bg’
    plot3D: no visible global function definition for ‘rgl.texts’
    plot3D: no visible global function definition for ‘rgl.quads’
    plot3D: no visible global function definition for ‘rgl.spheres’
    polyhedronGrow: no visible global function definition for ‘convhulln’
    polyhedronGrow: no visible global function definition for
     ‘makeTriangles’
    rgl.lines3d: no visible global function definition for ‘rgl.clear’
    rgl.lines3d: no visible global function definition for ‘rgl.lines’
    triPolyhCentroid: no visible global function definition for ‘extprod3d’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0-3
Check: examples
Result: ERROR
    Running examples in 'curvHDR-Ex.R' failed
    The error occurred in:
    
    
    R Under development (unstable) (2014-10-08 r66734) -- "Unsuffered Consequences"
    Copyright (C) 2014 The R Foundation for Statistical Computing
    Platform: x86_64-w64-mingw32/x64 (64-bit)
    
    R is free software and comes with ABSOLUTELY NO WARRANTY.
    You are welcome to redistribute it under certain conditions.
    Type 'license()' or 'licence()' for distribution details.
    
     Natural language support but running in an English locale
    
    R is a collaborative project with many contributors.
    Type 'contributors()' for more information and
    'citation()' on how to cite R or R packages in publications.
    
    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.
    
    > pkgname <- "curvHDR"
    > source(file.path(R.home("share"), "R", "examples-header.R"))
    > options(warn = 1)
    > options(pager = "console")
    > library('curvHDR')
    Loading required package: feature
    Loading required package: ks
    Loading required package: KernSmooth
    KernSmooth 2.23 loaded
    Copyright M. P. Wand 1997-2009
    Loading required package: misc3d
    Loading required package: mvtnorm
    Loading required package: rgl
    Loading required package: tcltk
    Loading required package: flowCore
    Loading required package: geometry
    Loading required package: magic
    Loading required package: abind
    Loading required package: hdrcde
    hdrcde 3.1 loaded
    
    Loading required package: ptinpoly
    >
    > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
    > cleanEx()
    Error in ls(envir = env, all.names = TRUE) :
     2 arguments passed to .Internal(ls) which requires 3
    Calls: cleanEx -> rm -> ls -> ls
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    curvHDRfilter: warning in rgl.bg(col = "white"): partial argument match
     of ‘col’ to ‘color’
    plot3D: warning in rgl.bg(col = bgCol): partial argument match of ‘col’
     to ‘color’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: package dependencies
Result: ERROR
    Package required but not available: ‘flowCore’
    
    Depends: includes the non-default packages:
     ‘feature’ ‘flowCore’ ‘geometry’ ‘hdrcde’ ‘ks’ ‘misc3d’ ‘ptinpoly’
     ‘rgl’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks