CRAN Package Check Results for Maintainer ‘John W. Emerson <john.emerson at yale.edu>’

Last updated on 2014-10-10 15:49:53.

Package ERROR WARN NOTE OK
barcode 14
bcp 15
gpairs 15
YaleToolkit 15

Package barcode

Current CRAN status: NOTE: 14

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘grid’ ‘lattice’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘grid’ ‘lattice’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.1
Check: R code for possible problems
Result: NOTE
    barcode: no visible global function definition for ‘unit’
    barcode: no visible global function definition for ‘grid.newpage’
    barcode: no visible global function definition for ‘grid.text’
    barcode: no visible global function definition for ‘gpar’
    barcode: no visible global function definition for ‘pushViewport’
    barcode: no visible global function definition for ‘viewport’
    barcode: no visible global function definition for ‘convertHeight’
    barcode: no visible global function definition for ‘convertWidth’
    barcode: no visible global function definition for ‘grid.rect’
    barcode: no visible global function definition for ‘popViewport’
    barcode.panel: no visible global function definition for ‘unit’
    barcode.panel: no visible global function definition for ‘pushViewport’
    barcode.panel: no visible global function definition for ‘viewport’
    barcode.panel: no visible global function definition for ‘grid.xaxis’
    barcode.panel: no visible global function definition for ‘gpar’
    barcode.panel: no visible global function definition for ‘grid.text’
    barcode.panel: no visible global function definition for ‘popViewport’
    barcode.panel: no visible global function definition for
     ‘grid.segments’
    barcode.panel: no visible global function definition for ‘grid.points’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘grid’ ‘lattice’
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘lattice’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package bcp

Current CRAN status: NOTE: 15

Version: 3.0.1
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘Makevars’ ‘Makevars.win’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.0.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘foreach’ ‘grid’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Rcpp’ ‘foreach’ ‘grid’ ‘iterators’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 3.0.1
Check: R code for possible problems
Result: NOTE
    bcp: no visible global function definition for ‘getDoParName’
    bcp: no visible global function definition for ‘registerDoSEQ’
    bcp: no visible global function definition for ‘getDoParWorkers’
    bcp: no visible global function definition for ‘%dopar%’
    bcp: no visible global function definition for ‘foreach’
    plot.bcp: no visible global function definition for ‘unit’
    plot.bcp: no visible global function definition for ‘grid.newpage’
    plot.bcp: no visible global function definition for ‘viewport’
    plot.bcp: no visible global function definition for ‘pushViewport’
    plot.bcp: no visible global function definition for ‘grid.rect’
    plot.bcp: no visible global function definition for ‘grid.text’
    plot.bcp: no visible global function definition for ‘gpar’
    plot.bcp: no visible global function definition for ‘grid.yaxis’
    plot.bcp: no visible global function definition for ‘grid.points’
    plot.bcp: no visible global function definition for ‘grid.lines’
    plot.bcp: no visible global function definition for ‘popViewport’
    plot.bcp: no visible global function definition for ‘grid.xaxis’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 3.0.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘foreach’ ‘grid’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Rcpp’ ‘foreach’ ‘iterators’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘DNAcopy’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 3.0.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'foreach' 'grid'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'Rcpp' 'foreach' 'iterators'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Package gpairs

Current CRAN status: OK: 15

Package YaleToolkit

Current CRAN status: NOTE: 15

Version: 4.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘grid’ ‘lattice’ ‘vcd’ ‘MASS’ ‘colorspace’ ‘barcode’ ‘gpairs’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 4.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘barcode’ ‘colorspace’ ‘gpairs’ ‘grid’ ‘lattice’ ‘vcd’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 4.1
Check: R code for possible problems
Result: NOTE
    sparkline: no visible global function definition for ‘unit’
    sparkline: no visible global function definition for ‘gpar’
    sparkline: no visible global function definition for ‘grid.newpage’
    sparkline: no visible global function definition for ‘unit.c’
    sparkline: no visible global function definition for ‘grid.rect’
    sparkline: no visible global function definition for ‘viewport’
    sparkline: no visible global function definition for ‘pushViewport’
    sparkline: no visible global function definition for ‘grid.text’
    sparkline: no visible global function definition for ‘grid.xaxis’
    sparkline: no visible global function definition for ‘grid.yaxis’
    sparkline: no visible global function definition for ‘grid.lines’
    sparkline: no visible global function definition for ‘grid.points’
    sparklines: no visible global function definition for ‘unit’
    sparklines: no visible global function definition for ‘gpar’
    sparklines: no visible global function definition for ‘grid.rect’
    sparklines: no visible global function definition for ‘grid.newpage’
    sparklines: no visible global function definition for ‘viewport’
    sparklines: no visible global function definition for ‘pushViewport’
    sparklines: no visible global function definition for ‘grid.text’
    sparklines: no visible global function definition for ‘grid.layout’
    sparklines: no visible global function definition for ‘grid.xaxis’
    sparklines: no visible global function definition for ‘popViewport’
    sparkmat: no visible global function definition for ‘unit’
    sparkmat: no visible global function definition for ‘grid.newpage’
    sparkmat: no visible global function definition for ‘pushViewport’
    sparkmat: no visible global function definition for ‘viewport’
    sparkmat: no visible global function definition for ‘grid.xaxis’
    sparkmat: no visible global function definition for ‘grid.yaxis’
    sparkmat: no visible global function definition for ‘is.unit’
    sparkmat: no visible global function definition for ‘grid.rect’
    sparkmat: no visible global function definition for ‘gpar’
    sparkmat: no visible global function definition for ‘popViewport’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 4.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘barcode’ ‘colorspace’ ‘gpairs’ ‘lattice’ ‘vcd’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64