CRAN Package Check Results for Maintainer ‘Kevin Wright <kw.stat at gmail.com>’

Last updated on 2014-10-10 15:49:55.

Package ERROR WARN NOTE OK
agridat 1 8 6
corrgram 1 14
rseedcalc 14

Package agridat

Current CRAN status: ERROR: 1, NOTE: 8, OK: 6

Version: 1.9
Check: R code for possible problems
Result: NOTE
    gge.matrix: no visible global function definition for ‘pca’
    gge.matrix: no visible global function definition for ‘prep’
    vc.glmerMod: no visible global function definition for ‘VarCorr’
    vc.lmerMod: no visible global function definition for ‘VarCorr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘gstat’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.9
Check: examples
Result: ERROR
    Running examples in ‘agridat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: waynick.soil
    > ### Title: Soil nitrogen and carbon in two fields
    > ### Aliases: waynick.soil
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > dat <- waynick.soil
    >
    > # Strong relationship between N,C
    > require(lattice)
    > xyplot(nitro~carbon|field, data=dat, main="waynick.soil")
    >
    > # Spatial plot
    > require(sp)
    Loading required package: sp
    > require(gstat)
    Loading required package: gstat
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘gstat’
    > d1 <- subset(dat, field=="Davis")
    > d2 <- subset(dat, field=="Oakley")
    > coordinates(d1) <- data.frame(x=d1$x, y=d1$y)
    > coordinates(d2) <- data.frame(x=d2$x, y=d2$y)
    > spplot(d1, zcol = "nitro", cuts=8, cex = 1.6,
    + main = "waynick.soil - Davis field - nitrogen",
    + col.regions = bpy.colors(8), key.space = "right")
    >
    > # Variogram
    > v1 <- variogram(nitro~1, data=d1)
    Error: could not find function "variogram"
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.1.1/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.1.1/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with 'browseVignettes()'. To
     cite Bioconductor, see 'citation("Biobase")', and for packages
     'citation("pkgname")'.
    
    Loading required package: Rcpp
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/bibtex/bst"' had status 1
    Error: running 'texi2dvi' on 'agridat.tex' failed
    
    LaTeX errors:
    ! LaTeX Error: File `inconsolata.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Package corrgram

Current CRAN status: NOTE: 1, OK: 14

Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'corrgram_examples.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `enumitem.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    n_test/corrgram/vignettes/corrgram_examples.tex:73: ==> Fatal error occurred,
    no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Package rseedcalc

Current CRAN status: OK: 14