Last updated on 2014-10-10 15:49:55.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| agridat | 1 | 8 | 6 | |
| corrgram | 1 | 14 | ||
| rseedcalc | 14 |
Current CRAN status: ERROR: 1, NOTE: 8, OK: 6
Version: 1.9
Check: R code for possible problems
Result: NOTE
gge.matrix: no visible global function definition for ‘pca’
gge.matrix: no visible global function definition for ‘prep’
vc.glmerMod: no visible global function definition for ‘VarCorr’
vc.lmerMod: no visible global function definition for ‘VarCorr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64
Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: Rcpp
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R/share/texmf/tex/latex" -I "D:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'agridat.tex' failed
LaTeX errors:
! LaTeX Error: File `inconsolata.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Execution halted
Flavor: r-devel-windows-ix86+x86_64
Version: 1.9
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gstat’
Flavor: r-release-osx-x86_64-mavericks
Version: 1.9
Check: examples
Result: ERROR
Running examples in ‘agridat-Ex.R’ failed
The error most likely occurred in:
> ### Name: waynick.soil
> ### Title: Soil nitrogen and carbon in two fields
> ### Aliases: waynick.soil
> ### Keywords: datasets
>
> ### ** Examples
>
> dat <- waynick.soil
>
> # Strong relationship between N,C
> require(lattice)
> xyplot(nitro~carbon|field, data=dat, main="waynick.soil")
>
> # Spatial plot
> require(sp)
Loading required package: sp
> require(gstat)
Loading required package: gstat
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘gstat’
> d1 <- subset(dat, field=="Davis")
> d2 <- subset(dat, field=="Oakley")
> coordinates(d1) <- data.frame(x=d1$x, y=d1$y)
> coordinates(d2) <- data.frame(x=d2$x, y=d2$y)
> spplot(d1, zcol = "nitro", cuts=8, cex = 1.6,
+ main = "waynick.soil - Davis field - nitrogen",
+ col.regions = bpy.colors(8), key.space = "right")
>
> # Variogram
> v1 <- variogram(nitro~1, data=d1)
Error: could not find function "variogram"
Execution halted
Flavor: r-release-osx-x86_64-mavericks
Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: Rcpp
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.1.1/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.1.1/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'agridat.tex' failed
LaTeX errors:
! LaTeX Error: File `inconsolata.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.9
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To
cite Bioconductor, see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: Rcpp
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Warning: running command '"D:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "agridat.tex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/tex/latex" -I "D:/Rcompile/recent/R-3.0.3/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'agridat.tex' failed
LaTeX errors:
! LaTeX Error: File `inconsolata.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Current CRAN status: NOTE: 1, OK: 14
Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Warning: running command 'kpsewhich framed.sty' had status 1
Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
unable to find LaTeX package 'framed'; will use a copy from knitr
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'corrgram_examples.tex' failed.
LaTeX errors:
! LaTeX Error: File `enumitem.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
n_test/corrgram/vignettes/corrgram_examples.tex:73: ==> Fatal error occurred,
no output PDF file produced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-release-osx-x86_64-mavericks
Current CRAN status: OK: 14