CRAN Package Check Results for Maintainer ‘Peter Frommolt <peter.frommolt at uni-koeln.de>’

Last updated on 2014-10-10 15:49:59.

Package ERROR WARN NOTE OK
bifactorial 15
ic50 14

Package bifactorial

Current CRAN status: NOTE: 15

Memtest notes: valgrind

Version: 1.4.7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘mvtnorm’ which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘Rcpp’ ‘mvtnorm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.7
Check: R code for possible problems
Result: NOTE
    maxstudent2 : padj.fun: no visible global function definition for
     ‘pmvnorm’
    pvstudent2 : padj.fun: no visible global function definition for
     ‘pmvnorm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.4.7
Check: compiled code
Result: NOTE
    File ‘bifactorial/libs/bifactorial.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘misc.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Objects: ‘krit.o’, ‘pv.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.4.7
Check: compiled code
Result: NOTE
    File ‘bifactorial/libs/bifactorial.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘misc.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Objects: ‘krit.o’, ‘pv.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 1.4.7
Check: compiled code
Result: NOTE
    File 'bifactorial/libs/i386/bifactorial.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'misc.o'
     Found 'srand', possibly from 'srand' (C)
     Objects: 'krit.o', 'pv.o'
    File 'bifactorial/libs/x64/bifactorial.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'misc.o'
     Found 'srand', possibly from 'srand' (C)
     Objects: 'krit.o', 'pv.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Package ic50

Current CRAN status: NOTE: 14

Version: 1.4.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘tcltk’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘tcltk’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.4.2
Check: R code for possible problems
Result: NOTE
    ic50: no visible global function definition for ‘tktoplevel’
    ic50: no visible global function definition for ‘tkwm.title’
    ic50: no visible global function definition for ‘tkradiobutton’
    ic50: no visible global function definition for ‘tclVar’
    ic50: no visible global function definition for ‘tkconfigure’
    ic50: no visible global function definition for ‘tkentry’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50: no visible global function definition for ‘tkbutton’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50 : onCompute: no visible global function definition for ‘tclvalue’
    ic50 : onCompute: no visible global function definition for ‘tclVar’
    ic50 : onCompute: no visible global function definition for ‘tkdestroy’
    ic50 : <anonymous>: no visible global function definition for
     ‘tkdestroy’
    ic50 : onMeasureEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onInhibPerc: no visible global function definition for
     ‘tclvalue’
    ic50: no visible global function definition for ‘tkgrid’
    ic50: no visible global function definition for ‘tklabel’
    ic50: no visible global function definition for ‘tkfocus’
    ic50: no visible global function definition for ‘tkwait.window’
    
    Found the following calls to data() loading into the global environment:
    File ‘ic50/R/misc.R’:
     data("default384_measure")
     data("default384_control")
     data("default384_dilution")
     data("default96_measure")
     data("default96_control")
     data("default96_dilution")
    See section ‘Good practice’ in ‘?data’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang

Version: 1.4.2
Check: Rd line widths
Result: NOTE
    Rd file 'hts.Rd':
     \examples lines wider than 100 characters:
     measure="mpi384_measure.txt",control="mpi384_control.txt",dilution="mpi384_dilution.txt",
    
    Rd file 'ic50.Rd':
     \examples lines wider than 100 characters:
     measure="mpi384_measure.txt",control="mpi384_control.txt",dilution="mpi384_dilution.txt",
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.4.2
Check: R code for possible problems
Result: NOTE
    ic50: no visible global function definition for ‘tktoplevel’
    ic50: no visible global function definition for ‘tkwm.title’
    ic50: no visible global function definition for ‘tkradiobutton’
    ic50: no visible global function definition for ‘tclVar’
    ic50: no visible global function definition for ‘tkconfigure’
    ic50: no visible global function definition for ‘tkentry’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onIndirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50: no visible global function definition for ‘tkbutton’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onMeasureBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionBrowse: no visible global function definition for
     ‘tkgetOpenFile’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue<-’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tclvalue’
    ic50 : onOutdirBrowse: no visible global function definition for
     ‘tkchooseDirectory’
    ic50 : onCompute: no visible global function definition for ‘tclvalue’
    ic50 : onCompute: no visible global function definition for ‘tclVar’
    ic50 : onCompute: no visible global function definition for ‘tkdestroy’
    ic50 : <anonymous>: no visible global function definition for
     ‘tkdestroy’
    ic50 : onMeasureEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onControlEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onDilutionEdit: no visible global function definition for
     ‘tclvalue’
    ic50 : onInhibPerc: no visible global function definition for
     ‘tclvalue’
    ic50: no visible global function definition for ‘tkgrid’
    ic50: no visible global function definition for ‘tklabel’
    ic50: no visible global function definition for ‘tkfocus’
    ic50: no visible global function definition for ‘tkwait.window’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.4.2
Check: R code for possible problems
Result: NOTE
    Found the following calls to data() loading into the global environment:
    File ‘ic50/R/misc.R’:
     data("default384_measure")
     data("default384_control")
     data("default384_dilution")
     data("default96_measure")
     data("default96_control")
     data("default96_dilution")
    See section ‘Good practice’ in ‘?data’.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.4.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘tcltk’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64