CRAN Package Check Results for Package s4vd

Last updated on 2014-10-10 15:49:18.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.40 73.32 74.71 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.35 69.34 70.69 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 168.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 157.71 NOTE
r-devel-osx-x86_64-clang 1.0 113.68 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 106.00 111.00 NOTE
r-patched-linux-x86_64 1.0 1.43 74.80 76.24 NOTE
r-patched-solaris-sparc 1.0 1012.90 NOTE
r-patched-solaris-x86 1.0 231.50 NOTE
r-release-linux-ix86 1.0 2.12 99.31 101.44 NOTE
r-release-linux-x86_64 1.0 1.54 76.63 78.17 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 5.00 104.00 109.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 115.00 120.00 NOTE

Check Details

Version: 1.0
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .project
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     data 5.3Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    BCheatmap: no visible global function definition for ‘diverge_hcl’
    BCheatmap: no visible global function definition for ‘rainbow_hcl’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'BCheatmap.Rd':
     \usage lines wider than 90 characters:
     BCheatmap(X, res, cexR = 1.5, cexC = 1.25, axisR = FALSE, axisC= TRUE, heatcols = diverge_hcl(12, h = c(260, 0), c = 80, l = c(30, 100)
     , power = 1.5, gamma = 2.4, fixup = TRUE), clustercols = rainbow_hcl(res@Number, c = 100,l = 50),
    
    Rd file 'BCs4vd.Rd':
     \examples lines wider than 100 characters:
     system.time( ress4vd <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=FALSE,nbiclust=1,savepath=TR ... [TRUNCATED]
     system.time( ress4vdpw <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=TRUE,nbiclust=1))
    
    Rd file 'BCssvd.Rd':
     \examples lines wider than 100 characters:
     system.time( ress4vd <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=FALSE,nbiclust=1,savepath=TR ... [TRUNCATED]
     system.time( ress4vdpw <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=TRUE,nbiclust=1))
    
    Rd file 'stabpath.Rd':
     \examples lines wider than 100 characters:
     system.time( ress4vd <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=FALSE,nbiclust=1,savepath=TR ... [TRUNCATED]
     system.time( ress4vdpw <- biclust(X,method=BCs4vd,pcerv=0.5,pceru=0.5,ss.thr=c(0.6,0.65),steps=500,pointwise=TRUE,nbiclust=1))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'methods'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard