LOGICOIL: LOGICOIL: multi-state prediction of coiled-coil oligomeric state

This package contains the functions necessary to run the LOGICOIL algorithm. LOGICOIL can be used to differentiate between antiparallel dimers, parallel dimers, trimers and higher-order coiled-coil sequence. By covering >90 percent of the known coiled-coil structures, LOGICOIL is a net improvement compared with other existing methods, which achieve a predictive coverage of around 31 percent of this population. As such, LOGICOIL is particularly useful for researchers looking to characterize novel coiled-coil sequences or studying coiled-coil containing protein assemblies. It may also be used to assist in the structural characterization of synthetic coiled-coil sequences.

Version: 0.99.0
Depends: R (≥ 2.12), nnet
Published: 2014-04-14
Author: Thomas L. Vincent, Peter J. Green and Derek N. Woolfson
Maintainer: Thomas L. Vincent <tlfvincent at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://coiledcoils.chm.bris.ac.uk/LOGICOIL
NeedsCompilation: no
CRAN checks: LOGICOIL results


Reference manual: LOGICOIL.pdf
Package source: LOGICOIL_0.99.0.tar.gz
Windows binaries: r-devel: LOGICOIL_0.99.0.zip, r-release: LOGICOIL_0.99.0.zip, r-oldrel: LOGICOIL_0.99.0.zip
OS X Snow Leopard binaries: r-release: LOGICOIL_0.99.0.tgz, r-oldrel: LOGICOIL_0.99.0.tgz
OS X Mavericks binaries: r-release: LOGICOIL_0.99.0.tgz