Map2NCBI: Mapping Markers to the Nearest Genomic Feature
Map2NCBI is an R package that allows the user to generate a list of
features (gene, pseudo, RNA, CDS, and/or UTR) directly from NCBI database for
any species with a current build available. Option to save downloaded and
formatted files is available, and the user can prioritize the feature list
based on type and assembly builds present in the current build used. The user
can then use the list of features generated or provide a list to map a set of
markers (designed for SNP markers with a single base pair position available)
to the closest feature based on the map build. This function does require map
positions of the markers to be provided and the positions should be based on
the build being queried through NCBI.
| Version: |
1.0 |
| Depends: |
R (≥ 2.15.3) |
| Published: |
2013-09-24 |
| Author: |
Lauren L. Hulsman Hanna and David G. Riley |
| Maintainer: |
Lauren Hanna <Lauren.Hanna at ndsu.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
Map2NCBI results |
Downloads: