falcon: Finding Allele-specific Copy Number in Next-Generation Sequencing Data

This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual.

Version: 0.1
Depends: R (≥ 3.0.1)
Published: 2014-04-24
Author: Hao Chen and Nancy R. Zhang
Maintainer: Hao Chen <hxchen at ucdavis.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: falcon results

Downloads:

Reference manual: falcon.pdf
Package source: falcon_0.1.tar.gz
Windows binaries: r-devel: falcon_0.1.zip, r-release: falcon_0.1.zip, r-oldrel: falcon_0.1.zip
OS X Snow Leopard binaries: r-release: falcon_0.1.tgz, r-oldrel: falcon_0.1.tgz
OS X Mavericks binaries: r-release: falcon_0.1.tgz