gapmap: Functions for Drawing Gapped Cluster Heatmap with ggplot2

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

Version: 0.0.2
Depends: ggplot2, grid, reshape2
Suggests: knitr, dendsort, RColorBrewer
Published: 2014-09-29
Author: Ryo Sakai
Maintainer: Ryo Sakai <ryo.sakai at esat.kuleuven.be>
License: GPL-2 | GPL-3
URL: https://bitbucket.org/biovizleuven/gapmap/
NeedsCompilation: no
CRAN checks: gapmap results

Downloads:

Reference manual: gapmap.pdf
Vignettes: An Introduction to the gapmap package
An example with a TCGA dataset
Package source: gapmap_0.0.2.tar.gz
Windows binaries: r-devel: gapmap_0.0.2.zip, r-release: gapmap_0.0.2.zip, r-oldrel: gapmap_0.0.2.zip
OS X Snow Leopard binaries: r-release: gapmap_0.0.2.tgz, r-oldrel: gapmap_0.0.2.tgz
OS X Mavericks binaries: r-release: gapmap_0.0.2.tgz
Old sources: gapmap archive