CRAN Package Check Results for Package ddepn

Last updated on 2014-11-24 23:47:01.

Check Details

Version: 2.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘coda’ ‘graph’ ‘igraph’ ‘lattice’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2
Check: R code for possible problems
Result: NOTE
    ddepn: no visible global function definition for ‘mclapply’
    gelman_diag: no visible global function definition for ‘mcmc’
    gelman_diag: no visible global function definition for ‘as.mcmc.list’
    gelman_diag: no visible global function definition for ‘gelman.diag’
    initialphi: no visible global function definition for ‘parallel’
    initialphi: no visible global function definition for ‘mccollect’
    layout.ellipsis: no visible global function definition for ‘V’
    netga: no visible global function definition for ‘mclapply’
    plot_edgeconfidences: no visible global function definition for
     ‘simpleKey’
    plot_edgeconfidences: no visible global function definition for
     ‘bwplot’
    plot_edgeconfidences : <anonymous>: no visible global function
     definition for ‘panel.grid’
    plot_edgeconfidences : <anonymous>: no visible global function
     definition for ‘panel.bwplot’
    plot_mcmctraces: no visible global function definition for ‘mcmc’
    plot_mcmctraces: no visible global function definition for ‘mcmc.list’
    plotdetailed: no visible binding for global variable ‘layout.circle’
    plotdetailed: no visible global function definition for
     ‘graph.adjacency’
    plotdetailed: no visible global function definition for
     ‘print.igraph.vs’
    plotdetailed: no visible global function definition for ‘V’
    plotdetailed: no visible global function definition for ‘tkplot’
    plotdetailed: no visible global function definition for
     ‘print.igraph.es’
    plotdetailed: no visible global function definition for ‘E’
    plotdetailed: no visible global function definition for ‘E<-’
    plotdetailed: no visible global function definition for ‘V<-’
    plotdetailed_Rgraphviz: no visible global function definition for
     ‘nodeRenderInfo<-’
    plotdetailed_Rgraphviz: no visible global function definition for
     ‘nodes’
    plotdetailed_Rgraphviz: no visible global function definition for
     ‘layoutGraph’
    plotdetailed_Rgraphviz: no visible global function definition for
     ‘renderGraph’
    plotdetailed_Rgraphviz: no visible global function definition for
     ‘graph.par’
    resume_ddepn: no visible global function definition for ‘mclapply’
    signalnetwork: no visible global function definition for ‘connComp’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.2
Check: compiled code
Result: NOTE
    File ‘ddepn/libs/ddepn.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Objects: ‘perform_hmmsearch.o’, ‘perform_hmmsearch_globalest.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘perform_hmmsearch.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 2.2
Check: compiled code
Result: NOTE
    File ‘ddepn/libs/ddepn.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Objects: ‘perform_hmmsearch.o’, ‘perform_hmmsearch_globalest.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘perform_hmmsearch.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 2.2
Check: compiled code
Result: NOTE
    File 'ddepn/libs/i386/ddepn.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'perform_hmmsearch.o', 'perform_hmmsearch_globalest.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'perform_hmmsearch.o'
    File 'ddepn/libs/x64/ddepn.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'perform_hmmsearch.o', 'perform_hmmsearch_globalest.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'perform_hmmsearch.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘genefilter’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2
Check: R code for possible problems
Result: NOTE
    initialphi: no visible global function definition for 'mccollect'
Flavor: r-oldrel-windows-ix86+x86_64