Last updated on 2014-11-24 23:47:05.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7-4.1 | 5.74 | 96.46 | 102.20 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.7-4.1 | 5.62 | 94.54 | 100.16 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.7-4.1 | 197.67 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7-4.1 | 189.03 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.7-4.1 | 194.60 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.7-4.1 | 30.00 | 168.00 | 198.00 | NOTE | |
| r-patched-linux-x86_64 | 1.7-4.1 | 5.79 | 102.61 | 108.40 | NOTE | |
| r-patched-solaris-sparc | 1.7-4.1 | 1168.10 | NOTE | |||
| r-patched-solaris-x86 | 1.7-4.1 | 257.20 | NOTE | |||
| r-release-linux-ix86 | 1.7-4.1 | 7.54 | 116.98 | 124.52 | NOTE | |
| r-release-linux-x86_64 | 1.7-4.1 | 5.81 | 101.20 | 107.01 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.7-4.1 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 1.7-4.1 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.7-4.1 | 25.00 | 182.00 | 207.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.7-4.1 | 24.00 | 174.00 | 198.00 | NOTE |
Memtest notes: valgrind
Version: 1.7-4.1
Check: dependencies in R code
Result: NOTE
':::' call which should be '::': ‘scatterplot3d:::scatterplot3d’
See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘.check.cov.model’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
eyefit: no visible global function definition for ‘tclVar’
eyefit : replot: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for
‘tkconfigure’
eyefit : redraw: no visible global function definition for ‘tkfocus’
eyefit: no visible global function definition for ‘tktoplevel’
eyefit: no visible global function definition for ‘tkwm.title’
eyefit: no visible global function definition for ‘tkframe’
eyefit: no visible global function definition for ‘tkpack’
eyefit: no visible global function definition for ‘tklabel’
eyefit: no visible global function definition for ‘tkentry’
eyefit: no visible global function definition for ‘tkscale’
eyefit: no visible global function definition for ‘tkradiobutton’
eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
eyefit : OnSave: no visible global function definition for ‘tclObj’
eyefit: no visible global function definition for ‘tkbutton’
eyefit: no visible global function definition for ‘tkbind’
eyefit : <anonymous>: no visible global function definition for
‘tclvalue<-’
eyefit: no visible global function definition for ‘tkwait.variable’
eyefit: no visible global function definition for ‘tkdestroy’
hist.krige.bayes: no visible global function definition for
‘bandwidth.nrd’
Found the following assignments to the global environment:
File ‘geoR/R/auxiliar.R’:
assign(".objfuncQQ", objfunc, pos = 1)
assign(".bounds.list", .bounds.list, pos = 1)
assign("madtonormalQQ", madtonormalQQ, pos = 1)
File ‘geoR/R/likGRF.R’:
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
temp.list$realisations), vecdist), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
File ‘geoR/R/likOLD.R’:
assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
n = n, minimisation.function = minimisation.function), pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.sill", theta[1], pos = 1)
assign(".temp.phi", theta[2], pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.nugget", theta[1], pos = 1)
assign(".temp.phi", theta[2], pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.phi", phi, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
File ‘geoR/R/profiles.R’:
assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
sigmasq.est = sigmasq), pos = 1)
assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
assign(".temp.list", .temp.temp.list, pos = 1)
File ‘geoR/R/simul.R’:
assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
pos = 1)
File ‘geoR/R/variofit.R’:
assign(".temp.theta", NULL, pos = 1)
assign(".temp.theta", theta, pos = 1)
assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
File ‘geoR/R/variogram.R’:
assign(".variog4.nomessage", TRUE, pos = 1)
Found the following calls to attach():
File ‘geoR/R/auxiliar.R’:
attach(geodata, pos = 2, warn.conflicts = FALSE)
attach(geodata$covariate, pos = 3, warn.conflicts = FALSE)
File ‘geoR/R/geobayes.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
File ‘geoR/R/geodata.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
File ‘geoR/R/kriging.R’:
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
attach(x, pos = 2, warn.conflicts = FALSE)
See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.7-4.1
Check: Rd line widths
Result: NOTE
Rd file 'coords2coords.Rd':
\examples lines wider than 100 characters:
legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
Rd file 'sample.prior.Rd':
\examples lines wider than 100 characters:
sample.prior(50, prior=prior.control(beta.prior = "normal", beta = .5, beta.var.std=0.1, sigmasq.prior="sc", sigmasq=1.2, df.sigmasq= 2 ... [TRUNCATED]
Rd file 'subarea.Rd':
\examples lines wider than 100 characters:
legend("topleft", c("foo", "foo1 (zoom.coords)", "foo2 (coords2coords)"), lty=c(1,2,1), lwd=c(1,1,2))
r1dn <- zoom.coords(r1d, 1.7, xlim.o=range(r1b[,1],na.rm=TRUE), ylim.o=range(r1b[,2],na.rm=TRUE), xoff=90, yoff=-90)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
eyefit: no visible global function definition for ‘tclVar’
eyefit : replot: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for
‘tkconfigure’
eyefit : redraw: no visible global function definition for ‘tkfocus’
eyefit: no visible global function definition for ‘tktoplevel’
eyefit: no visible global function definition for ‘tkwm.title’
eyefit: no visible global function definition for ‘tkframe’
eyefit: no visible global function definition for ‘tkpack’
eyefit: no visible global function definition for ‘tklabel’
eyefit: no visible global function definition for ‘tkentry’
eyefit: no visible global function definition for ‘tkscale’
eyefit: no visible global function definition for ‘tkradiobutton’
eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
eyefit : OnSave: no visible global function definition for ‘tclObj’
eyefit: no visible global function definition for ‘tkbutton’
eyefit: no visible global function definition for ‘tkbind’
eyefit : <anonymous>: no visible global function definition for
‘tclvalue<-’
eyefit: no visible global function definition for ‘tkwait.variable’
eyefit: no visible global function definition for ‘tkdestroy’
hist.krige.bayes: no visible global function definition for
‘bandwidth.nrd’
Found the following assignments to the global environment:
File ‘geoR/R/auxiliar.R’:
assign(".objfuncQQ", objfunc, pos = 1)
assign(".bounds.list", .bounds.list, pos = 1)
assign("madtonormalQQ", madtonormalQQ, pos = 1)
File ‘geoR/R/likGRF.R’:
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords),
realisations), vecdist), pos = 1)
assign(".likGRF.dists.vec", lapply(split(as.data.frame(coords.c),
temp.list$realisations), vecdist), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
File ‘geoR/R/likOLD.R’:
assign(".temp.list", list(z = z, xmat = xmat, txmat = txmat,
fixtau = fixtau, ftau = ftau, method = method, kappa = kappa,
cov.model = cov.model, beta.size = beta.size, lower.phi = lower.phi,
dists.lowertri = dists.vec, var.z = var.z, fix.lambda = fix.lambda,
n = n, minimisation.function = minimisation.function), pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower", c(0, lower.phi), pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 2, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.lower.phi", lower.phi, pos = 1)
assign(".temp.lower.lambda", -2, pos = 1)
assign(".temp.upper.lambda", 2, pos = 1)
assign(".ind.prof.phi", 1, pos = 1)
assign(".temp.sill", theta[1], pos = 1)
assign(".temp.phi", theta[2], pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.nugget", theta[1], pos = 1)
assign(".temp.phi", theta[2], pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.phi", phi, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
assign(".temp.lambda", lambda, pos = 1)
File ‘geoR/R/profiles.R’:
assign(".temp.list", list(n = n, z = data, beta.size = dim(trend)[2],
kappa = obj.likfit$kappa, xmat = trend, method.lik = obj.likfit$method.lik,
dists.lowertri = dists.vec, cov.model = obj.likfit$cov.model,
fix.lambda = obj.likfit$transform.info$fix.lambda, lambda = obj.likfit$lambda,
lower.phi = lower.phi, upper.phi = upper.phi, lower.sigmasq = lower.sigmasq,
phi.est = phi, tausq.rel.est = tausq.rel, tausq.est = tausq,
sigmasq.est = sigmasq), pos = 1)
assign(".temp.temp.list", get(".temp.list", pos = 1), pos = 1)
assign(".temp.list", .temp.temp.list, pos = 1)
File ‘geoR/R/simul.R’:
assign("setRF", geoR2RF(cov.model = cov.model, cov.pars = cov.pars,
nugget = nugget, kappa = kappa, aniso.pars = aniso.pars),
pos = 1)
File ‘geoR/R/variofit.R’:
assign(".temp.theta", NULL, pos = 1)
assign(".temp.theta", theta, pos = 1)
assign(".IND.geoR.variog.model.env", TRUE, pos = 1)
File ‘geoR/R/variogram.R’:
assign(".variog4.nomessage", TRUE, pos = 1)
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-linux-ix86
Version: 1.7-4.1
Check: R code for possible problems
Result: NOTE
eyefit: no visible global function definition for ‘tclVar’
eyefit : replot: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for ‘tclObj’
eyefit : redraw: no visible global function definition for
‘tkconfigure’
eyefit : redraw: no visible global function definition for ‘tkfocus’
eyefit: no visible global function definition for ‘tktoplevel’
eyefit: no visible global function definition for ‘tkwm.title’
eyefit: no visible global function definition for ‘tkframe’
eyefit: no visible global function definition for ‘tkpack’
eyefit: no visible global function definition for ‘tklabel’
eyefit: no visible global function definition for ‘tkentry’
eyefit: no visible global function definition for ‘tkscale’
eyefit: no visible global function definition for ‘tkradiobutton’
eyefit : OnQuit: no visible global function definition for ‘tclvalue<-’
eyefit : OnSave: no visible global function definition for ‘tclObj’
eyefit: no visible global function definition for ‘tkbutton’
eyefit: no visible global function definition for ‘tkbind’
eyefit : <anonymous>: no visible global function definition for
‘tclvalue<-’
eyefit: no visible global function definition for ‘tkwait.variable’
eyefit: no visible global function definition for ‘tkdestroy’
hist.krige.bayes: no visible global function definition for
‘bandwidth.nrd’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64