This package provides a series of functions to make amplicon-based metagenomic analysis more accessible, and publication-quality plots simple. Amplicon-based (or targeted) metagenomics amplifies and sequences selected DNA regions of environmental samples, but not the entire pool of genetic material, which is referred to as shotgun metagenomics. The amplicon-metagenomics mainly aims at characterizing broad microbiota biodiversity in different environments.
| Version: |
1.1.0 |
| Depends: |
vegan, ggplot2, stats |
| Imports: |
gridExtra, RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, stringr, ggmap, permute |
| Suggests: |
testthat, Heatplus, indicspecies, lattice |
| Published: |
2014-10-22 |
| Author: |
Wen Chen and Joshua Simpson |
| Maintainer: |
Wen Chen <Wen.Chen at agr.gc.ca> |
| License: |
MIT + file LICENSE |
| Copyright: |
Government of Canada |
| NeedsCompilation: |
no |
| Citation: |
RAM citation info |
| Materials: |
NEWS ChangeLog |
| CRAN checks: |
RAM results |