RSNPset: RSNPset
RSNPset is a software implementation of the use of efficient score statistics
in genome-wide SNP set analysis with complex traits. The package provides three standard
score statistics (Cox, Binomial, and Gaussian) but is easily extensible to include
others. Code implementing the inferential procedure is primarily written in C++ and
utilizes parallelization of the analysis to reduce runtime. A supporting function offers
simple computation of observed, permutation, and FWER and FDR adjusted p-values.
| Version: |
0.2 |
| Imports: |
fastmatch (≥ 1.0-4), foreach (≥ 1.4.1), doRNG (≥ 1.5.3), qvalue (≥ 1.34), Rcpp (≥ 0.10.4) |
| LinkingTo: |
Rcpp, RcppEigen |
| Suggests: |
knitr |
| Published: |
2014-06-10 |
| Author: |
Chanhee Yi, Alexander Sibley, and Kouros Owzar |
| Maintainer: |
Chanhee Yi <chanhee.yi at dm.duke.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
yes |
| CRAN checks: |
RSNPset results |
Downloads: