Package includes functions to analyse sequence data in FASTA Format with known HLA types or other features and calculate in the case of HLA as feature possible epitopes from them. Further it calculates possible co-mutations from these sequences and generates graphical output in PDF.
| Version: | 0.1.5 |
| Depends: | R (≥ 3.1.0), tcltk, tcltk2, Biostrings, plotrix, ape |
| Imports: | plyr, phangorn, qvalue, widgetTools |
| Suggests: | xtable |
| Published: | 2014-06-10 |
| Author: | Bettina Budeus |
| Maintainer: | Bettina Budeus <bettina.budeus at stud.uni-due.de> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | SeqFeatR results |
| Reference manual: | SeqFeatR.pdf |
| Package source: | SeqFeatR_0.1.5.tar.gz |
| Windows binaries: | r-devel: SeqFeatR_0.1.5.zip, r-release: SeqFeatR_0.1.5.zip, r-oldrel: not available |
| OS X Snow Leopard binaries: | r-release: not available, r-oldrel: not available |
| OS X Mavericks binaries: | r-release: not available |