TESS: Fast simulation of reconstructed phylogenetic trees under time-dependent birth-death processes

TESS is a package for simulation of reconstructed phylogenetic trees under global, time-dependent birth-death processes. Speciation and extinction rates can be any function of time and mass-extinction events at specific times can be provided. Trees can be simulated either conditioned on the number of species, the time of the process, or both. Additionally, the likelihood equations are implemented for convenience and can be used for Maximum Likelihood (ML) estimation and Bayesian inference.

Version: 1.2.1
Depends: ape, coda, deSolve
Published: 2013-04-22
Author: Sebastian Hoehna
Maintainer: Sebastian Hoehna <hoehna at math.su.se>
License: GPL-3
NeedsCompilation: no
Materials: NEWS
In views: Phylogenetics
CRAN checks: TESS results


Reference manual: TESS.pdf
Package source: TESS_1.2.1.tar.gz
Windows binaries: r-devel: TESS_1.2.1.zip, r-release: TESS_1.2.1.zip, r-oldrel: TESS_1.2.1.zip
OS X Snow Leopard binaries: r-release: TESS_1.2.1.tgz, r-oldrel: TESS_1.2.1.tgz
OS X Mavericks binaries: r-release: TESS_1.2.1.tgz
Old sources: TESS archive