Available CRAN Packages By Date of Publication

Date	Package	Title
2014-11-24	accelerometry	Functions for Processing Minute-to-Minute Accelerometer Data
2014-11-24	acepack	ace() and avas() for selecting regression transformations
2014-11-24	Bergm	Bayesian analysis for exponential random graph models
2014-11-24	choiceDes	Design Functions for Choice Studies
2014-11-24	choplump	Choplump tests
2014-11-24	ClickClust	Model-Based Clustering of Categorical Sequences
2014-11-24	dslice	Dynamic slicing
2014-11-24	EGRET	Exploration and Graphics for RivEr Trends (EGRET)
2014-11-24	fdatest	Interval Testing Procedure for functional data
2014-11-24	genridge	Generalized Ridge Trace Plots for Ridge Regression
2014-11-24	indicspecies	Relationship between Species and Groups of Sites
2014-11-24	metafor	Meta-Analysis Package for R
2014-11-24	missMDA	Handling missing values with/in multivariate data analysis (principal component methods)
2014-11-24	paleobioDB	Download and Process Data from the Paleobiology Database
2014-11-24	pvclass	P-values for Classification
2014-11-24	RCMIP5	Tools for Manipulating and Summarizing CMIP5 Data
2014-11-24	rdatamarket	Data access API for DataMarket.com
2014-11-24	RNCEP	Obtain, Organize, and Visualize NCEP Weather Data
2014-11-24	Rsolnp	General Non-linear Optimization
2014-11-24	sgr	Sample Generation by Replacement
2014-11-24	SimRAD	Simulations to predict the number of loci expected in RAD and GBS approaches
2014-11-24	someKfwer	Controlling the Generalized Familywise Error Rate
2014-11-24	TH.data	TH's Data Archive
2014-11-24	wux	Wegener Center Climate Uncertainty Explorer
2014-11-24	xpose4	Tools for Nonlinear Mixed-Effect Model Building and Diagnostics
2014-11-23	BiodiversityR	GUI for biodiversity, suitability and community ecology analysis
2014-11-23	broom	Convert Statistical Analysis Objects Into Tidy Data Frames
2014-11-23	care	High-Dimensional Regression and CAR Score Variable Selection
2014-11-23	EloRating	Animal Dominance Hierarchies by Elo Rating
2014-11-23	jiebaR	Chinese Text Segmentation
2014-11-23	matchingMarkets	An R package for the analysis of stable matchings
2014-11-23	mediation	Causal Mediation Analysis
2014-11-23	NHMSAR	Non-Homogeneous Markov Switching Autoregressive Models: Fitting, Simulating, Validating
2014-11-23	RCryptsy	Access to Cryptsy Crypto-Currency Exchange Public Information API via R
2014-11-23	sirt	Supplementary Item Response Theory Models
2014-11-22	arfima	Fractional ARIMA Time Series Modeling
2014-11-22	bayesTFR	Bayesian Fertility Projection
2014-11-22	BIFIEsurvey	Some Tools for Survey Statistics in Educational Assessment, Developed by BIFIE
2014-11-22	bpcp	Beta Product Confidence Procedure for Right Censored Data
2014-11-22	CDM	Cognitive Diagnosis Modeling
2014-11-22	classyfire	Robust multivariate classification using highly optimised SVM ensembles
2014-11-22	EnsembleBase	Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
2014-11-22	greport	Graphical Reporting for Clinical Trials
2014-11-22	Hmisc	Harrell Miscellaneous
2014-11-22	LambertW	Analyze and Gaussianize heavy-tailed, skewed data
2014-11-22	lmerTest	Tests in Linear Mixed Effects Models
2014-11-22	magrittr	A Forward-Pipe Operator for R
2014-11-22	MAPA	Multiple Aggregation Prediction Algorithm
2014-11-22	MATA	Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
2014-11-22	MAVIS	Meta Analysis via Shiny
2014-11-22	mkin	Routines for Fitting Kinetic Models with One or More State Variables to Chemical Degradation Data
2014-11-22	nodiv	Compares the Distribution of Sister Clades Through a Phylogeny
2014-11-22	PASWR2	Probability and Statistics with R, Second Edition
2014-11-22	pdc	Permutation Distribution Clustering
2014-11-22	PoweR	Computation of Power and Level Tables for Hypothesis Tests
2014-11-22	proteomics	Statistical Analysis of High Throughput Proteomics Data
2014-11-22	pxweb	R interface to the PX-Web/PC-Axis API
2014-11-22	quantspec	Quantile-based Spectral Analysis of Time Series
2014-11-22	RadOnc	Analytical Tools for Radiation Oncology
2014-11-22	robustbase	Basic Robust Statistics
2014-11-22	rvest	Easily Harvest (Scrape) Web Pages
2014-11-22	SciencesPo	A tool set for political behaviour data
2014-11-22	sisus	SISUS: Stable Isotope Sourcing using Sampling
2014-11-22	TAM	Test Analysis Modules
2014-11-22	yhatr	R binder for the Yhat API
2014-11-21	aprof	Amdahl's profiler, directed optimization made easy
2014-11-21	bayesPop	Probabilistic Population Projection
2014-11-21	db.r	A Database Exploration Tool with Assisted Querying and Schema Exploration
2014-11-21	glmvsd	Variable Selection Deviation (VSD) Measures and Instability Tests for High-dimensional Generalized Linear Models
2014-11-21	interpretR	Binary Classifier Interpretation functions: Partial Dependence Plots
2014-11-21	ivivc	A Data Analysis Tool for In Vitro-In Vivo Correlation (IVIVC)
2014-11-21	lmms	Linear mixed effect model splines for modelling and analysis of time course data
2014-11-21	Ramd	Tools For Managing File/function Dependencies In R
2014-11-21	rfUtilities	Random Forests model selection and performance evaluation
2014-11-20	BACprior	Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
2014-11-20	bayesLife	Bayesian Projection of Life Expectancy
2014-11-20	bglm	Bayesian Estimation in Generalized Linear Models
2014-11-20	crmn	CCMN and other noRMalizatioN methods for metabolomics data
2014-11-20	curl	A Connection Interface to Libcurl
2014-11-20	deltaPlotR	Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
2014-11-20	dfmta	Phase I/II Adaptive Dose-Finding Design For MTA
2014-11-20	frmhet	Regression Analysis of Fractional Responses Under Unobserved Heterogeneity
2014-11-20	gset	Group Sequential Design in Equivalence Studies
2014-11-20	ilc	Lee-Carter Mortality Models using Iterative Fitting Algorithms
2014-11-20	oaxaca	Blinder-Oaxaca decomposition
2014-11-20	plotmo	Plot a Model's Response While Varying the Values of the Predictors
2014-11-20	RAPIDR	Reliable Accurate Prenatal non-Invasive Diagnosis R package
2014-11-20	ReporteRs	Microsoft Word, Microsoft Powerpoint and HTML documents generation from R
2014-11-20	ROracle	OCI based Oracle database interface for R
2014-11-20	sprinter	Framework for Screening Prognostic Interactions
2014-11-20	statcheck	Extract statistics from articles and recompute p values
2014-11-20	treethresh	Methods for Tree-based Local Adaptive Thresholding
2014-11-20	tsintermittent	Intermittent Time Series Forecasting
2014-11-20	x12	x12 - wrapper function and structure for batch processing
2014-11-20	x12GUI	X12 - Graphical User Interface
2014-11-19	acnr	Annotated Copy-Number Regions
2014-11-19	adaptivetau	Tau-leaping stochastic simulation
2014-11-19	analogue	Analogue and weighted averaging methods for palaeoecology
2014-11-19	analogueExtra	Additional functions for use with the analogue package
2014-11-19	basicspace	Recovering a Basic Space from Issue Scales
2014-11-19	climdex.pcic	PCIC Implementation of Climdex Routines
2014-11-19	cocorresp	Co-correspondence Analysis Methods
2014-11-19	DataCombine	R tools for making it easier to combine and clean data sets
2014-11-19	meta	Meta-Analysis with R
2014-11-19	pedometrics	Pedometric Tools and Techniques
2014-11-19	Peptides	Calculate Indices and Theoretical Properties of Protein Sequences
2014-11-19	PGICA	Parallel Group ICA Algorithm
2014-11-19	PopED	Population (and individual) optimal Experimental Design
2014-11-19	QuACN	QuACN: Quantitative Analysis of Complex Networks
2014-11-19	rpart.plot	Plot rpart models. An enhanced version of plot.rpart
2014-11-19	SEAsic	Score Equity Assessment- summary index computation
2014-11-19	sjPlot	Data Visualization for Statistics in Social Science
2014-11-19	sqlutils	Utilities for working with SQL files
2014-11-19	waterData	An R Package for Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic Time Series Data
2014-11-18	attribrisk	Population Attributable Risk
2014-11-18	boolean3	Boolean Binary Response Models
2014-11-18	C50	C5.0 Decision Trees and Rule-Based Models
2014-11-18	car	Companion to Applied Regression
2014-11-18	CCAGFA	Bayesian canonical correlation analysis and group factor analysis
2014-11-18	cooccur	Probabilistic Species Co-occurrence Analysis in R
2014-11-18	ensurer	Ensure values at runtime
2014-11-18	ExtremeBounds	Extreme Bounds Analysis (EBA)
2014-11-18	fishmethods	Fishery Science Methods and Models in R
2014-11-18	lava	Latent Variable Models
2014-11-18	LMest	Fit Latent Markov models in basic versions
2014-11-18	lokern	Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
2014-11-18	MCS	Model Confidence Set Procedure
2014-11-18	mets	Analysis of Multivariate Event Times
2014-11-18	paleofire	Analysis of Charcoal Records from the Global Charcoal Database
2014-11-18	phylolm	Phylogenetic Linear Regression
2014-11-18	RcppAnnoy	Rcpp Bindings for Annoy, a Library for Approximate Nearest Neighbors
2014-11-18	rPref	rPref
2014-11-18	RRreg	Correlation and Regression Analyses for Randomized Response Data
2014-11-18	rsml	Plant Root System Markup Language (RSML) File Processing
2014-11-18	rtkpp	STK++ Integration To R Using Rcpp
2014-11-18	scrm	Simulating the Evolution of Biological Sequences
2014-11-18	sda	Shrinkage Discriminant Analysis and CAT Score Variable Selection
2014-11-18	seacarb	seawater carbonate chemistry with R
2014-11-18	secr	Spatially explicit capture-recapture
2014-11-18	selectspm	Select point patterns models based on minimum contrast and AIC
2014-11-18	sidier	Substitution and Indel Distances to Infer Evolutionary Relationships
2014-11-18	simPop	Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information
2014-11-18	smacpod	Statistical Methods for the Analysis of Case-Control Point Data
2014-11-18	spatialTailDep	Estimation of spatial tail dependence models
2014-11-18	timereg	Flexible regression models for survival data
2014-11-18	TSclust	Time Series Clustering Utilities
2014-11-18	XBRL	Extraction of Business Financial Information from XBRL Documents
2014-11-17	BDgraph	Graph estimation based on birth-death MCMC approach
2014-11-17	cvAUC	Cross-Validated Area Under the ROC Curve Confidence Intervals
2014-11-17	EMDomics	Earth Mover's Distance for Differential Analysis of Genomics Data
2014-11-17	goric	Generalized Order-Restricted Information Criterion
2014-11-17	mcprofile	Multiple Contrast Profiles
2014-11-17	randomLCA	Random Effects Latent Class Analysis
2014-11-17	randtests	Testing randomness in R
2014-11-17	rcicr	Reverse correlation image classification toolbox
2014-11-17	sla	Two-Group Straight Line ANCOVA
2014-11-17	sparkTable	Sparklines and graphical tables for tex and html
2014-11-17	spThin	Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models
2014-11-17	vegan	Community Ecology Package
2014-11-16	coneproj	Primal or Dual Cone Projections with Routines for Constrained Regression
2014-11-16	FLSSS	Fixed Size Subset Sum Solution
2014-11-16	GeneNet	Modeling and Inferring Gene Networks
2014-11-16	glpkAPI	R Interface to C API of GLPK
2014-11-16	ISOpureR	Deconvolution of Tumour Profiles
2014-11-16	MVN	Multivariate Normality Tests
2014-11-16	vudc	Visualization of Univariate Data for Comparison
2014-11-15	Amelia	Amelia II: A Program for Missing Data
2014-11-15	CEC	Cross-Entropy Clustering
2014-11-15	grpreg	Regularization paths for regression models with grouped covariates
2014-11-15	GUIProfiler	Profiler Graphical User Interface
2014-11-15	pracma	Practical Numerical Math Functions
2014-11-15	RVAideMemoire	Diverse basic statistical and graphical functions
2014-11-15	vowels	Vowel Manipulation, Normalization, and Plotting
2014-11-14	aoos	Another Object Orientation System
2014-11-14	binda	Multi-Class Discriminant Analysis using Binary Predictors
2014-11-14	CARBayesST	Poisson Log-linear Models with Spatio-temporal Random Effects
2014-11-14	coefficientalpha	Robust Cronbach's Alpha and Mcdonald's Omega with Missing and Non-normal Data
2014-11-14	crossval	Generic Functions for Cross Validation
2014-11-14	dataRetrieval	Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
2014-11-14	entropy	Estimation of Entropy, Mutual Information and Related Quantities
2014-11-14	equateIRT	Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
2014-11-14	FastHCS	FastHCS Robust Algortihm for Principal Component Analysis
2014-11-14	FastRCS	FastRCS Robust Fit of Multivariable Linear Regression Model
2014-11-14	fdrtool	Estimation of (Local) False Discovery Rates and Higher Criticism
2014-11-14	iterpc	Efficient Iterator for Permutations and Combinations
2014-11-14	lm.br	Linear Model with Breakpoint
2014-11-14	longitudinal	Analysis of Multiple Time Course Data
2014-11-14	lsmeans	Least-Squares Means
2014-11-14	mp	Multidimensional Projection Techniques
2014-11-14	ordinal	Regression Models for Ordinal Data
2014-11-14	papeR	A toolbox for writing Sweave or other LaTeX-based papers and reports
2014-11-14	rpf	Response Probability Functions
2014-11-14	st	Shrinkage t Statistic and Correlation-Adjusted t-Score
2014-11-14	ttScreening	Genome-wide DNA methylation sites screening by use of training and testing samples
2014-11-13	aftgee	Accelerated Failure Time Model with Generalized Estimating Equations
2014-11-13	aqp	Algorithms for Quantitative Pedology
2014-11-13	bde	Bounded Density Estimation
2014-11-13	bdscale	Remove Weekends and Holidays From ggplot2 Axes
2014-11-13	dbarts	Discrete Bayesian Additive Regression Trees Sampler
2014-11-13	DetR	Suite of Deterministic and Robust Algorithms for Linear Regression
2014-11-13	diseasemapping	Calculate observed and expected disease incidence counts from a case file and population data
2014-11-13	doBy	doBy - Groupwise summary statistics, LSmeans, general linear contrasts, various utilities
2014-11-13	ega	Error Grid Analysis
2014-11-13	entropart	Entropy Partitioning to Measure Diversity
2014-11-13	FastPCS	FastPCS Robust Fit of Multivariate Location and Scatter
2014-11-13	geostatsp	Geostatistics using SpatialPoints and rasters
2014-11-13	HiClimR	Hierarchical Climate Regionalization
2014-11-13	megaptera	MEGAPhylogeny Techniques in R
2014-11-13	mvtnorm	Multivariate Normal and t Distributions
2014-11-13	NPBayesImpute	Non-parametric Bayesian Multiple Imputation for Categorical Data
2014-11-13	optimx	A Replacement and Extension of the optim() Function
2014-11-13	pbkrtest	Parametric bootstrap and Kenward-Roger-based methods for mixed model comparison
2014-11-13	plotROC	Generate Useful ROC Curve Charts for Print and Interactive Use
2014-11-13	PowerTOST	Power and Sample size based on two one-sided t-tests (TOST) for (bio)equivalence studies
2014-11-13	spatsurv	Bayesian spatial survival analysis with parametric proportional hazards models
2014-11-13	sudokuAlt	Tools for Making, Displaying and Spoiling Sudoku Games
2014-11-13	toxtestD	Experimental design for binary toxicity tests
2014-11-12	descomponer	Seasonal Adjustment by Frequency Analysis
2014-11-12	HapEstXXR	Multi-locus stepwise regression (MSR)
2014-11-12	LinRegInteractive	Interactive Interpretation of Linear Regression Models
2014-11-12	lpSolveAPI	R Interface for lp_solve version 5.5.2.0
2014-11-12	nparcomp	Multiple Comparisons and Simultaneous Confidence Intervals
2014-11-12	R2GUESS	Wrapper functions for GUESS
2014-11-12	rcbalance	Large, Sparse Optimal Matching with Refined Covariate Balance
2014-11-12	rgl	3D visualization device system (OpenGL)
2014-11-12	rmongodb	R-MongoDB driver
2014-11-12	SemiParBIVProbit	Semiparametric Bivariate Probit Modelling
2014-11-12	tufterhandout	Tufte-style html document format for rmarkdown
2014-11-11	catdata	Categorical Data
2014-11-11	csvread	Fast Specialized CSV File Loader
2014-11-11	DepthProc	DepthProc
2014-11-11	GLDreg	Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
2014-11-11	glogis	Fitting and Testing Generalized Logistic Distributions
2014-11-11	knitr	A General-Purpose Package for Dynamic Report Generation in R
2014-11-11	lymphclon	Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
2014-11-11	mixexp	Design and analysis of mixture experiments
2014-11-11	mombf	Moment and Inverse Moment Bayes factors
2014-11-11	phangorn	Phylogenetic analysis in R
2014-11-11	qicharts	Quality Improvement Charts
2014-11-11	RAdwords	Loading Google Adwords Data Into R
2014-11-11	rAverage	Parameter estimation for the averaging model of Information Integration Theory
2014-11-11	rFerns	Random ferns classifier
2014-11-11	rTensor	Tools for tensor analysis and decomposition
2014-11-11	synbreed	Framework for the analysis of genomic prediction data using R
2014-11-11	TopKLists	Inference, aggregation and visualization for top-k ranked lists
2014-11-10	BH	Boost C++ header files
2014-11-10	caret	Classification and Regression Training
2014-11-10	D2C	Predicting Causal Direction from Dependency Features
2014-11-10	EBglmnet	Empirical Bayesian Lasso (EBlasso) and Elastic Net (EBEN) Methods for Generalized Linear Models
2014-11-10	episplineDensity	Density Estimation with Soft Information by Exponential Epi-splines
2014-11-10	geocodeHERE	Wrapper for Nokia's HERE Geocoding API
2014-11-10	gsDesign	Group Sequential Design
2014-11-10	GSIF	Global Soil Information Facilities
2014-11-10	HWxtest	Exact Tests for Hardy-Weinberg Proportions
2014-11-10	ionflows	Calculate the Number of Required Flows for Semiconductor Sequencing
2014-11-10	ips	Interfaces to Phylogenetic Software in R
2014-11-10	ISBF	Iterative Selection of Blocks of Features - ISBF
2014-11-10	mixlm	Mixed Model ANOVA and Statistics for Education
2014-11-10	ModelGood	Validation of risk prediction models
2014-11-10	mpath	Regularized Linear Models
2014-11-10	party	A Laboratory for Recursive Partytioning
2014-11-10	PHYLOGR	Functions for Phylogenetically Based Statistical Analyses
2014-11-10	randomUniformForest	Random Uniform Forests for Classification, Regression and Unsupervised Learning
2014-11-10	RcmdrPlugin.NMBU	R Commander Plug-In for Statistics at NMBU
2014-11-10	Rcpp11	R and C++11
2014-11-10	Rothermel	Rothermel fire spread model for R
2014-11-10	RSiteCatalyst	R Client for Adobe Analytics API v1.4
2014-11-10	tumblR	Tumblr API
2014-11-10	TUWmodel	Lumped Hydrological Model for Education Purposes
2014-11-10	VAR.etp	VAR modelling: estimation, testing, and prediction
2014-11-09	crank	Completing ranks
2014-11-09	DOvalidation	Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
2014-11-09	EntropyEstimation	Estimation of Entropy and Related Quantities
2014-11-09	extraTrees	Extremely Randomized Trees (ExtraTrees) method for classification and regression
2014-11-09	MetaLandSim	Metapopulation and Landscape Simulation
2014-11-09	nCal	Nonlinear Calibration
2014-11-09	plotrix	Various plotting functions
2014-11-09	riskSimul	Risk Quantification for Stock Portfolios under the T-Copula Model
2014-11-09	rugarch	Univariate GARCH models
2014-11-09	sp	classes and methods for spatial data
2014-11-09	spaMM	Mixed Models, Particularly Spatial GLMMs
2014-11-08	dummy	Automatic Creation of Dummies with Support for Predictive Modeling
2014-11-08	geometry	Mesh generation and surface tesselation
2014-11-08	LinCal	Static Univariate Frequentist and Bayesian Linear Calibration
2014-11-08	miceadds	Some additional multiple imputation functions, especially for mice
2014-11-08	opencpu	The OpenCPU system for embedded scientific computing and reproducible research
2014-11-08	OptionPricing	Option Pricing with Efficient Simulation Algorithms
2014-11-08	pez	Phylogenetics for the Environmental Sciences
2014-11-08	stm	Estimation of the Structural Topic Model
2014-11-08	TreePar	Estimating birth and death rates based on phylogenies
2014-11-08	vcrpart	Tree-Based Varying Coefficient Regression for Generalized Linear and Ordinal Mixed Models
2014-11-07	aRxiv	Interface to the arXiv API
2014-11-07	BB	Solving and Optimizing Large-Scale Nonlinear Systems
2014-11-07	birk	MA Birk functions
2014-11-07	biwavelet	Conduct Univariate and Bivariate Wavelet Analyses
2014-11-07	BTYD	Implementing Buy 'Til You Die Models
2014-11-07	circlize	Circular Visualization in R
2014-11-07	dfcomb	Phase I/II Adaptive Dose-Finding Design for Combination Studies
2014-11-07	dglm	Double Generalized Linear Models
2014-11-07	gdimap	Generalized Diffusion Magnetic Resonance Imaging
2014-11-07	ggswissmaps	Offers Various Swiss Maps as ggplot2 Objects
2014-11-07	heritability	Marker-based Estimation of Heritability Using Individual Plant or Plot Data
2014-11-07	hypergeo	The Hypergeometric Function
2014-11-07	npsm	Package for Nonparametric Statistical Methods using R
2014-11-07	openssl	Bindings to OpenSSL
2014-11-07	PANDA	Preferential Attachment Based Common Neighbor Distribution Derived Functional Associations
2014-11-07	plot3D	Plotting multi-dimensional data
2014-11-07	Rfit	Rank Estimation for Linear Models
2014-11-07	rgbif	Interface to the Global Biodiversity Information Facility API
2014-11-07	RJSDMX	R Interface to SDMX Web Services
2014-11-07	rminer	Data Mining Classification and Regression Methods
2014-11-07	rnrfa	UK National River Flow Archive data from R
2014-11-07	sqldf	Perform SQL Selects on R Data Frames
2014-11-07	weightedScores	Weighted Scores Method for Regression Models with Dependent Data
2014-11-07	wikipediatrend	Public Subject Attention via Wikipedia Page Access Statistics
2014-11-06	anim.plots	Simple Animated Plots For R
2014-11-06	confreq	Configural Frequencies Analysis Using Log-linear Modeling
2014-11-06	CpGFilter	CpG Filtering Method Based on Intra-class Correlation Coefficients
2014-11-06	diagram	Functions for visualising simple graphs (networks), plotting flow diagrams
2014-11-06	dma	Dynamic model averaging
2014-11-06	elliptic	elliptic functions
2014-11-06	GetoptLong	Parsing Command-line Arguments and Variable Interpolation
2014-11-06	GGIR	Raw Accelerometer Data Analysis
2014-11-06	lpme	Local Polynomial Estimator in Measurement Error Models
2014-11-06	lsgl	Linear Sparse Group Lasso
2014-11-06	marmap	Import, plot and analyze bathymetric and topographic data
2014-11-06	msgl	High Dimensional Multiclass Classification Using Sparse Group Lasso
2014-11-06	PLSbiplot1	The Partial Least Squares (PLS) Biplot
2014-11-06	poplite	Tools for simplifying the population and querying of SQLite databases
2014-11-06	pushoverr	Send push notifications using Pushover
2014-11-06	RcppRedis	Rcpp bindings for Redis using the hiredis library
2014-11-06	RobustAFT	Truncated Maximum Likelihood fit and Robust Accelerated Failure Time regression for Gaussian and logWeibull case
2014-11-06	rootSolve	Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations
2014-11-06	stringi	Character string processing facilities
2014-11-06	tagcloud	Tag Clouds
2014-11-06	VGAM	Vector Generalized Linear and Additive Models
2014-11-06	xtal	Crystallization Toolset
2014-11-05	descr	Descriptive statistics
2014-11-05	geesmv	Modified Variance Estimators for Generalized Estimating Equations
2014-11-05	hcp	Change Point Estimation for Regression with Heteroscedastic Data
2014-11-05	label.switching	Relabelling MCMC outputs of mixture models
2014-11-05	MAT	Multidimensional Adaptive Testing
2014-11-05	MGL	Module Graphical Lasso
2014-11-05	MPAgenomics	Multi-Patient Analysis of Genomic Markers
2014-11-05	NMOF	Numerical Methods and Optimization in Finance
2014-11-05	ordinalgmifs	Ordinal Regression for High-dimensional Data
2014-11-05	pca3d	Three dimensional PCA plots
2014-11-05	prc	Paired Response Curve
2014-11-05	Quandl	Quandl Data Connection
2014-11-05	readBrukerFlexData	Reads Mass Spectrometry Data in Bruker *flex Format
2014-11-05	RPPanalyzer	Reads, annotates, and normalizes reverse phase protein array data
2014-11-05	shape	Functions for plotting graphical shapes, colors
2014-11-05	strap	Stratigraphic Tree Analysis for Palaeontology
2014-11-05	trip	Spatial Analysis of Animal Track Data
2014-11-05	TRSbook	Functions and Datasets to Accompany the Book "The R Software: Fundamentals of Programming and Statistical Analysis"
2014-11-05	usl	Analyze system scalability with the Universal Scalability Law
2014-11-05	vardpoor	Variance estimation for surveys by the ultimate cluster method
2014-11-05	WARN	Weaning Age Reconstruction with Nitrogen isotope analysis
2014-11-05	Watersheds	Spatial Watershed Aggregation and Spatial Drainage Network Analysis
2014-11-04	CorReg	Linear regression based on linear structure between covariates
2014-11-04	FAMILY	A Convex Formulation for Modeling Interactions with Strong Heredity
2014-11-04	feature	Feature significance for multivariate kernel density estimation
2014-11-04	FME	A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability, Monte Carlo Analysis
2014-11-04	fslr	Wrapper functions for FSL (FMRIB Software Library) from Functional MRI of the Brain (FMRIB)
2014-11-04	geomorph	geometric morphometric analyses of 2d/3d landmark data
2014-11-04	HDPenReg	High-Dimensional Penalized Regression
2014-11-04	marelac	Tools for Aquatic Sciences
2014-11-04	ONETr	Efficient authenticated interaction with the O*NET API
2014-11-04	prim	Patient Rule Induction Method (PRIM)
2014-11-04	pvar	the Calculation and Application of p-variation
2014-11-04	RPushbullet	R Interface to the Pushbullet Messaging Service
2014-11-04	sglOptim	Sparse group lasso generic optimizer
2014-11-04	SKAT	SNP-set (Sequence) Kernel Association Test
2014-11-04	snht	Standard Normal Homogeneity Test
2014-11-04	snpEnrichment	SNPs Enrichment Analysis
2014-11-04	spareserver	Client side load balancing
2014-11-04	SSN	Spatial Modeling on Stream Networks
2014-11-04	VGAMdata	Data supporting the VGAM package
2014-11-04	WhiteStripe	Whitestripe White Matter Normalization for Magnetic Resonance Images
2014-11-03	afex	Analysis of Factorial Experiments
2014-11-03	BayesTree	Bayesian Additive Regression Trees
2014-11-03	BNSP	Bayesian Non- and Semi-parametric Model Fitting
2014-11-03	CombinePValue	Combine a Vector of Correlated p-values
2014-11-03	GlobalOptions	Generate Functions to Get or Set Global Options
2014-11-03	limSolve	Solving Linear Inverse Models
2014-11-03	multgee	GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
2014-11-03	mvabund	Statistical Methods for Analysing Multivariate Abundance Data
2014-11-03	mvSLOUCH	MultiVariate Stochastic Linear Ornstein-Uhlenbeck models for phylogenetic Comparative hypotHeses
2014-11-03	PopGenome	An Efficient Swiss Army Knife for Population Genomic Analyses
2014-11-03	rARPACK	R wrapper of ARPACK for large scale eigenvalue/vector problems, on both dense and sparse matrices
2014-11-03	rjson	JSON for R
2014-11-03	rsdmx	Tools for reading SDMX data and metadata
2014-11-03	ScoreGGUM	Score Persons Using the Generalized Graded Unfolding Model
2014-11-03	sdcTarget	Statistical Disclosure Control Substitution Matrix Calculator
2014-11-03	ShrinkCovMat	Shrinkage Covariance Matrix Estimators
2014-11-03	tm.plugin.webmining	Retrieve structured, textual data from various web sources
2014-11-03	x.ent	eXtraction of ENTity
2014-11-02	bcpa	Behavioral change point analysis of animal movement
2014-11-02	blocksdesign	Nested Block Designs for Unstructured Treatments
2014-11-02	CountsEPPM	Mean and variance modeling of count data
2014-11-02	dbmss	Distance-Based Measures of Spatial Structures
2014-11-02	disposables	Create Disposable R Packages for Testing
2014-11-02	enaR	Tools for ecological network analysis (ena) in R
2014-11-02	EpiModel	Mathematical Modeling of Infectious Disease
2014-11-02	OptimalCutpoints	Computing optimal cutpoints in diagnostic tests
2014-11-01	eHOF	Extended and enhanced Hierarchical Logistic Regression models (so-called Huisman-Olff-Fresco models)
2014-11-01	GLDEX	Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
2014-11-01	kaps	K-Adaptive Partitioning for Survival data
2014-11-01	myTAI	A framework to perform phylotranscriptomics analyses for Evolutionary Developmental Biology research
2014-11-01	RealVAMS	Multivariate VAM Fitting
2014-11-01	RMTstat	Distributions, Statistics and Tests derived from Random Matrix Theory
2014-11-01	smac	Sparse Multi-category Angle-Based Large-Margin Classifiers
2014-11-01	statar	Tools Inspired by Stata to Clean, Explore and Join Datasets
2014-11-01	texreg	Conversion of R regression output to LaTeX or HTML tables
2014-11-01	vcdExtra	vcd extensions and additions
2014-11-01	vegdata	Functions to access vegetation databases (Turboveg) and prepare vegetation data especially its taxonomy for analysis
2014-11-01	VNM	Using V-algorithm and Newton-Raphson Method to Obtain Multiple-objective Optimal Design
2014-11-01	xergm	Extensions for Exponential Random Graph Models (ERGM)
2014-10-31	BatchExperiments	Statistical experiments on batch computing clusters
2014-10-31	Crossover	Crossover Designs
2014-10-31	hermite	Generalized Hermite distribution
2014-10-31	laGP	Local Approximate Gaussian Process Regression
2014-10-31	PrivateLR	Differentially Private Regularized Logistic Regression
2014-10-31	rex	Friendly regular expressions
2014-10-31	seqinr	Biological Sequences Retrieval and Analysis
2014-10-31	TR8	A tool for downloading functional traits data for plant species
2014-10-31	tuple	Find every match, or orphan, duplicate, triplicate, or other replicated values
2014-10-30	BatchJobs	Batch computing with R
2014-10-30	BBmisc	Miscellaneous helper functions for B. Bischl
2014-10-30	dynBiplotGUI	Full Interactive GUI for Dynamic Biplot in R
2014-10-30	etasFLP	Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
2014-10-30	fAssets	Rmetrics - Analysing and Modelling Financial Assets
2014-10-30	fPortfolio	Rmetrics - Portfolio Selection and Optimization
2014-10-30	genpathmox	Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
2014-10-30	hglm	Hierarchical Generalized Linear Models
2014-10-30	mapplots	Data Visualisation on Maps
2014-10-30	MortalitySmooth	Smoothing and Forecasting Poisson Counts with P-Splines
2014-10-30	multicon	Multivariate Constructs
2014-10-30	pollstR	R client for the Huffpost Pollster API
2014-10-30	PrevMap	PrevMap - an R package for prevalence mapping
2014-10-30	qtl	Tools for analyzing QTL experiments
2014-10-30	Rcmdr	R Commander
2014-10-30	RcppArmadillo	Rcpp Integration for the Armadillo Templated Linear Algebra Library
2014-10-30	rNOMADS	An interface to the NOAA Operational Model Archive and Distribution System
2014-10-30	sn	The skew-normal and skew-t distributions
2014-10-30	surveillance	Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena
2014-10-30	webutils	Utility Functions for Web Applications
2014-10-29	addreg	Additive Regression for Discrete Data
2014-10-29	alm	R Client for the Lagotto Altmetrics API Platform
2014-10-29	DAMOCLES	Dynamic Assembly Model Of Colonization, Local Extinction and Speciation
2014-10-29	deSolve	General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE), Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay Differential Equations (DDE)
2014-10-29	exCon	Interactive Exploration of Contour Data
2014-10-29	fBasics	Rmetrics - Markets and Basic Statistics
2014-10-29	HTSDiff	Differential Analysis of RNA-Seq Data with Poisson Mixture Models
2014-10-29	isdals	Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
2014-10-29	ldr	Methods for likelihood-based dimension reduction in regression
2014-10-29	mlr	Machine Learning in R
2014-10-29	nullabor	Tools for Graphical Inference
2014-10-29	pander	An R Pandoc Writer
2014-10-29	peacots	Periodogram Peaks in Correlated Time Series
2014-10-29	R6	Classes with reference semantics
2014-10-29	RefManageR	Straightforward BibTeX and BibLaTeX Bibliography Management
2014-10-29	rqPen	R Package for Penalized Quantile Regression
2014-10-29	Taxonstand	Taxonomic standardization of plant species names
2014-10-28	BSSasymp	Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
2014-10-28	CateSelection	Categorical Variable Selection Methods
2014-10-28	Ecfun	Functions for Ecdat
2014-10-28	energy	E-statistics (energy statistics)
2014-10-28	FAOSTAT	A complementary package to the FAOSTAT database and the Statistical Yearbook of the Food and Agricultural Organization of the United Nations
2014-10-28	hht	The Hilbert-Huang Transform: Tools and Methods
2014-10-28	knitcitations	Citations for knitr markdown files
2014-10-28	lassoscore	High-Dimensional Inference with the Penalized Score Test
2014-10-28	logconPH	CoxPH Model with Log Concave Baseline Distribution
2014-10-28	MfUSampler	Multivariate-from-Univariate (MfU) MCMC Sampler
2014-10-28	qmethod	Analysis of Subjective Perspectives Using Q Methodology
2014-10-28	robustreg	Robust Regression Functions
2014-10-28	safi	Sensitivity Analysis for Functional Input
2014-10-28	seqMeta	Meta-Analysis of Region-Based Tests of Rare DNA Variants
2014-10-28	settings	Software Option Settings Manager for R
2014-10-28	timeSeries	Rmetrics - Financial Time Series Objects
2014-10-27	astsa	Applied Statistical Time Series Analysis
2014-10-27	bio3d	Biological Structure Analysis
2014-10-27	choroplethr	Simplify the creation of choropleth maps in R
2014-10-27	DALY	DALY Calculator - A GUI for stochastic DALY calculation in R
2014-10-27	fICA	Classical, Reloaded and Adaptive FastICA Algorithms
2014-10-27	h2o	H2O R Interface
2014-10-27	pitchRx	Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
2014-10-27	PopGenReport	PopGenReport: A simple way to analyse and visualize population genetic data
2014-10-27	qdm	Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments
2014-10-27	rangeMapper	A platform for the study of macroecology of life history traits
2014-10-27	RGA	A Google Analytics API client for R
2014-10-27	rjags	Bayesian graphical models using MCMC
2014-10-27	ropensecretsapi	R Package for the OpenSecrets.org API
2014-10-27	RQDA	R-based Qualitative Data Analysis
2014-10-27	timeDate	Rmetrics - Chronological and Calendar Objects
2014-10-26	rdrobust	Robust data-driven statistical inference in Regression-Discontinuity designs
2014-10-26	RODBC	ODBC Database Access
2014-10-26	RSelenium	R bindings for Selenium WebDriver
2014-10-25	BayesMixSurv	Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
2014-10-25	BiSEp	Toolkit To Identify Candidate Synthetic Lethality
2014-10-25	choroplethrMaps	Contains maps used by the choroplethr package
2014-10-25	DBKGrad	Discrete Beta Kernel Graduation of Mortality Data
2014-10-25	FSelector	Selecting attributes
2014-10-25	HiDimDA	High Dimensional Discriminant Analysis
2014-10-25	highD2pop	Two-Sample Tests for Equality of Means in High Dimension
2014-10-25	ivpack	Instrumental Variable Estimation
2014-10-25	MAINT.Data	Model and Analyse Interval Data
2014-10-25	managelocalrepo	Manage a CRAN-style Local Repository
2014-10-25	rasterVis	Visualization methods for the raster package
2014-10-25	replicationInterval	Replication Interval Functions
2014-10-25	RSQLite	SQLite Interface for R
2014-10-25	simTool	Conduct Simulation Studies with a Minimal Amount of Source Code
2014-10-25	sparr	The sparr package: SPAtial Relative Risk
2014-10-25	spBayesSurv	Bayesian Modeling and Analysis of Spatially Correlated Survival Data
2014-10-25	Surrogate	Evaluation of surrogate endpoints in clinical trials
2014-10-25	TwoStepCLogit	Conditional logistic regression: A two-step estimation method
2014-10-25	vecsets	like base::sets tools but keeps duplicate elements
2014-10-25	VIM	Visualization and Imputation of Missing Values
2014-10-24	matrixpls	Matrix-based Partial Least Squares estimation
2014-10-24	P2C2M	Posterior Predictive Checks of Coalescent Models
2014-10-24	PANICr	PANIC Tests of Nonstationarity
2014-10-24	PHENIX	Phenotypic Integration Index
2014-10-24	polyCub	Cubature over Polygonal Domains
2014-10-24	ruv	Detect and Remove Unwanted Variation using Negative Controls
2014-10-24	spatstat	Spatial Point Pattern analysis, model-fitting, simulation, tests
2014-10-24	spocc	R Interface to Many Species Occurrence Data Sources
2014-10-24	WRS2	Wilcox Robust Estimation and Testing
2014-10-23	CAMAN	Finite Mixture Models and meta-analysis tools - based on C.A.MAN
2014-10-23	highr	Syntax highlighting for R
2014-10-23	httpuv	HTTP and WebSocket server library
2014-10-23	IsingFit	Fitting Ising models using the eLasso method
2014-10-23	JADE	JADE and other BSS methods as well as some BSS performance criteria
2014-10-23	leafletR	Interactive Web-Maps Based on the Leaflet JavaScript Library
2014-10-23	matR	Metagenomics Analysis Tools for R
2014-10-23	MRH	Multi-Resolution Estimation of the Hazard Rate
2014-10-23	sgof	Multiple hypothesis testing
2014-10-23	sld	Estimation and Use of the Quantile-Based Skew Logistic Distribution
2014-10-23	splitstackshape	Stack and Reshape Datasets After Splitting Concatenated Values
2014-10-22	AutoSEARCH	General-to-Specific (GETS) Model Selection
2014-10-22	BAT	Biodiversity Assessment Tools
2014-10-22	BayesFactor	Computation of Bayes factors for common designs
2014-10-22	confidence	Confidence Estimation of Environmental State Classifications
2014-10-22	FDGcopulas	Multivariate Dependence with FDG Copulas
2014-10-22	gramEvol	Grammatical Evolution For R
2014-10-22	indicoio	A simple R Wrapper for the indico set of APIs - http://indico.io
2014-10-22	JMdesign	Joint Modeling of Longitudinal and Survival Data - Power Calculation
2014-10-22	lmenssp	Linear Mixed Effects Models with Non-stationary Stochastic Processes
2014-10-22	MixGHD	Model based clustering, classification and discriminant analysis using the mixture of generalized hyperbolic distributions
2014-10-22	ore	An R Interface to the Oniguruma Regular Expression Library
2014-10-22	ParetoPosStable	Computing, fitting and validating the PPS distribution
2014-10-22	pcaPP	Robust PCA by Projection Pursuit
2014-10-22	RAM	R for Amplicon-based Metagenomics
2014-10-22	saeSim	Simulation Tools for Small Area Estimation
2014-10-22	sigloc	Signal Location Estimation
2014-10-22	speedglm	Fitting Linear and Generalized Linear Models to large data sets
2014-10-22	stepp	Subpopulation Treatment Effect Pattern Plot (STEPP)
2014-10-22	TDboost	A Boosted Nonparametric Tweedie Model
2014-10-22	timeordered	Time-ordered and time-aggregated network analyses
2014-10-22	traj	Trajectory Analysis
2014-10-21	cdcsis	Conditional Distance Correlation and Its Related Feature Screening Method
2014-10-21	DetMCD	DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
2014-10-21	EnvStats	Package for Environmental Statistics, including US EPA Guidance
2014-10-21	equate	Observed-Score Linking and Equating
2014-10-21	extracat	Categorical Data Analysis and Visualization
2014-10-21	jackknifeKME	Jackknife Estimates of Kaplan-Meier Estimators or Integrals
2014-10-21	jsonlite	A Robust, High Performance JSON Parser and Generator for R
2014-10-21	MESS	Miscellaneous Esoteric Statistical Scripts
2014-10-21	MPTinR	Analyze Multinomial Processing Tree Models
2014-10-21	nhlscrapr	Compiling the NHL Real Time Scoring System Database for easy use in R
2014-10-21	npsp	Nonparametric spatial (geo)statistics
2014-10-21	PKfit	Data Analysis Tool for Pharmacokinetics
2014-10-21	prevalence	The prevalence package
2014-10-21	RcppParallel	Parallel programming tools for Rcpp
2014-10-21	redcapAPI	R interface to REDCap
2014-10-21	RnavGraph	Using Graphs as a Navigational Infrastructure
2014-10-21	rplexos	Read and Analyze PLEXOS Solutions from R
2014-10-21	SamplingStrata	Optimal stratification of sampling frames for multipurpose sampling surveys
2014-10-21	tclust	Robust Trimmed Clustering
2014-10-20	commentr	Print Nicely Formatted Comments for use in Script Files
2014-10-20	geonames	Interface to www.geonames.org web service
2014-10-20	icapca	Mixed ICA/PCA
2014-10-20	imputeYn	Imputing the Last Largest Censored Observation(s) under Weighted Least Squares
2014-10-20	MDSGUI	A GUI for interactive MDS in R
2014-10-20	multiwayvcov	Multi-way Standard Error Clustering
2014-10-20	npmlreg	Nonparametric maximum likelihood estimation for random effect models
2014-10-20	restlos	Robust Estimation of Location and Scatter
2014-10-20	Rook	Rook - a web server interface for R
2014-10-19	AdapEnetClass	A Class of Adaptive Elastic-net Methods for Censored Data
2014-10-19	checkmate	Fast and versatile argument checks
2014-10-19	DEoptimR	Differential Evolution Optimization in pure R
2014-10-19	flare	Family of Lasso Regression
2014-10-19	meteoForecast	Numerical Weather Predictions
2014-10-19	multispatialCCM	Multispatial Convergent Cross Mapping
2014-10-19	picasso	Pathwise Calibrated Sparse Shooting Algorithm
2014-10-19	stylo	Functions for a Variety of Stylometric Analyses
2014-10-19	tis	Time Indexes and Time Indexed Series
2014-10-18	landpred	Landmark Prediction of a Survival Outcome
2014-10-18	openxlsx	Read, Write and Edit XLSX Files
2014-10-18	rareNMtests	Ecological and biogeographical null model tests for comparing rarefaction curves
2014-10-18	raster	raster: Geographic data analysis and modeling
2014-10-18	stochprofML	Stochastic Profiling using Maximum Likelihood Estimation
2014-10-17	AICcmodavg	Model Selection and Multimodel Inference Based on (Q)AIC(c)
2014-10-17	BcDiag	Diagnostics plots for Bicluster Data
2014-10-17	CINOEDV	Co-Information based N-Order Epistasis Detector and Visualizer
2014-10-17	CLME	Constrained Inference for Linear Mixed Effects Models
2014-10-17	ecoval	Procedures for Ecological Assessment of Surface Waters
2014-10-17	enigma	R Client for the Enigma API
2014-10-17	ExtDist	Extended Probability Distribution Functions
2014-10-17	fat2Lpoly	Two-locus Family-based Association Test with Polytomous Outcome
2014-10-17	gsg	Calculation of selection coefficients
2014-10-17	highTtest	Simultaneous Critical Values for t-Tests in Very High Dimensions
2014-10-17	kselection	Selection of k in k-means clustering
2014-10-17	likert	Functions to analyze and visualize likert type items
2014-10-17	mdscore	Improved Score Tests for Generalized Linear Models
2014-10-17	pBrackets	Plot Brackets
2014-10-17	PtProcess	Time Dependent Point Process Modelling
2014-10-17	R.devices	Unified handling of graphics devices
2014-10-17	RMKdiscrete	Sundry Discrete Probability Distributions
2014-10-17	segmag	Determine Event Boundaries in Event Segmentation Experiments
2014-10-17	sisVIVE	Some Invalid Some Valid Instrumental Variables Estimator
2014-10-16	frailtypack	General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
2014-10-16	logbin	Relative Risk Regression Using the Log Binomial Model
2014-10-16	metaMix	Bayesian Mixture Analysis for Metagenomic Community Profiling
2014-10-16	Metatron	Meta-analysis for Classification Data and Correction to Imperfect Reference
2014-10-16	NbClust	NbClust package for determining the best number of clusters
2014-10-16	NPCirc	Nonparametric Circular Methods
2014-10-16	PubMedWordcloud	PubMed Word Clouds
2014-10-16	RcmdrPlugin.steepness	Steepness Rcmdr Plug-in
2014-10-16	rfoaas	R Interface to FOAAS
2014-10-16	rivernet	Read, Analyze and Plot River Networks
2014-10-16	Rrdrand	Generate Physical Random Numbers on Intel CPUs with the RdRand instruction
2014-10-16	seedy	Simulation of Evolutionary and Epidemiological Dynamics
2014-10-16	SMR	Externally Studentized Midrange Distribution
2014-10-16	StMoSim	Plots a QQ-Norm Plot with several Gaussian simulations
2014-10-16	stochvol	Efficient Bayesian Inference for Stochastic Volatility (SV) Models
2014-10-16	transport	Optimal transport in various forms
2014-10-16	windex	windex: Analysing convergent evolution using the Wheatsheaf index
2014-10-15	AlgDesign	Algorithmic Experimental Design
2014-10-15	berryFunctions	Function Collection related to Hydrology, Zooming and Plotting
2014-10-15	clustvarsel	Variable Selection for Model-Based Clustering
2014-10-15	crayon	Colored Terminal Output
2014-10-15	cwhmisc	Miscellaneous Functions for math, plotting, printing, statistics, strings, and tools
2014-10-15	evtree	Evolutionary Learning of Globally Optimal Trees
2014-10-15	GA	Genetic Algorithms
2014-10-15	gets	General-to-Specific (GETS) Model Selection
2014-10-15	ggRandomForests	Creating and Plotting Data Objects for Understanding Random Forests
2014-10-15	matrixStats	Methods that apply to rows and columns of a matrix
2014-10-15	mirtCAT	Computerized Adaptive Testing with Multidimensional Item Response Theory
2014-10-15	nsgp	Non-Stationary Gaussian Process Regression
2014-10-15	rbison	R interface to the USGS BISON API
2014-10-15	spark	Sparklines in the R Terminal
2014-10-15	SpecsVerification	Forecast verification routines for the SPECS FP7 project
2014-10-15	spgrass6	Interface between GRASS 6+ geographical information system and R
2014-10-15	strvalidator	Process Control And Internal Validation Of Forensic STR Kits
2014-10-15	TDA	Statistical Tools for Topological Data Analysis
2014-10-15	utility	Construct, Evaluate and Plot Value and Utility Functions
2014-10-15	vetools	Tools for Venezuelan Environmental Data
2014-10-14	dice	Calculate probabilities of various dice-rolling events
2014-10-14	epinet	A Collection of Epidemic/Network-Related Tools
2014-10-14	FADA	Variable selection for supervised classification in high dimension
2014-10-14	InterVA4	Replicate and analyse InterVA4
2014-10-14	mclogit	Mixed Conditional Logit
2014-10-14	metaplus	Robust meta-analysis and meta-regression
2014-10-14	overlap	Estimates of coefficient of overlapping for animal activity patterns
2014-10-14	SCGLR	Supervised Component Generalized Linear Regression (SCGLR)
2014-10-14	soilphysics	Soil Physical Analysis
2014-10-14	spgwr	Geographically weighted regression
2014-10-13	Anthropometry	Statistical Methods for Anthropometric Data
2014-10-13	ASMap	Linkage map construction using the MSTmap algorithm
2014-10-13	CP	Conditional Power Calculations
2014-10-13	datamart	Unified access to your data sources
2014-10-13	eegkit	Toolkit for Electroencephalography Data
2014-10-13	flam	Fits Piecewise Constant Models with Data-Adaptive Knots
2014-10-13	memisc	Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation
2014-10-13	msBP	Multiscale Bernstein Polynomials for Densities
2014-10-13	mwaved	Multichannel wavelet deconvolution with additive long memory noise
2014-10-13	popRange	popRange: A spatially and temporally explicit forward genetic simulator
2014-10-13	prettyunits	Pretty, Human Readable Formatting of Quantities
2014-10-13	QualInt	Test for Qualitative Interactions
2014-10-13	rcdk	rcdk - Interface to the CDK Libraries
2014-10-13	RImpala	R and Impala
2014-10-13	sptm	SemiParametric Transformation Model Methods
2014-10-12	BSGW	Bayesian Survival Model using Generalized Weibull Regression
2014-10-12	ConvergenceConcepts	Seeing convergence concepts in action
2014-10-12	googleVis	Interface between R and Google Charts
2014-10-12	RNetLogo	Provides an Interface to the Agent-Based Modelling Platform NetLogo
2014-10-12	VdgRsm	Variance Dispersion and Fraction of Design Space Plots
2014-10-11	dplyr	A Grammar of Data Manipulation
2014-10-11	mfblock	Fitting and Simulation of a block multifactor model
2014-10-11	timetools	provides objects and tools to manipulate irregular heterogeneous time data and subtime data
2014-10-10	adwave	Wavelet Analysis of Genomic Data from Admixed Populations
2014-10-10	Benchmarking	Benchmark and Frontier Analysis Using DEA and SFA
2014-10-10	checkpoint	Install Packages from Snapshots on the Checkpoint Server for Reproducibility
2014-10-10	G2Sd	Grain-size Statistics and Description of Sediment
2014-10-10	HierO	A graphical user interface for calculating power and sample size for hierarchical data
2014-10-10	lfe	Linear Group Fixed Effects
2014-10-10	mirt	Multidimensional Item Response Theory
2014-10-10	MplusAutomation	Automating Mplus Model Estimation and Interpretation
2014-10-10	ParamHelpers	Helpers for parameters in black-box optimization, tuning and machine learning
2014-10-10	PivotalR	R front-end to PostgreSQL and Pivotal (Greenplum) database, wrapper for MADlib
2014-10-10	Power2Stage	Power and Sample size distribution of 2-stage BE studies via simulations
2014-10-10	protr	Generating Various Numerical Representation Schemes of Protein Sequence
2014-10-10	R.matlab	Read and write of MAT files together with R-to-MATLAB connectivity
2014-10-10	RSQLServer	SQL Server R Database Interface (DBI)
2014-10-09	anominate	alpha-NOMINATE Ideal Point Estimator
2014-10-09	ENiRG	Ecological Niche in R and GRASS
2014-10-09	freqweights	Working with frequency tables
2014-10-09	minqa	Derivative-free optimization algorithms by quadratic approximation
2014-10-09	mpcv	Multivariate Process Capability Vector
2014-10-08	cclust	Convex Clustering Methods and Clustering Indexes
2014-10-08	geospt	Spatial geostatistics; some geostatistical and radial basis functions, prediction and cross validation; design of optimal spatial sampling networks based on geostatistical modelling
2014-10-08	HiDimMaxStable	Inference on High Dimensional Max-Stable Distributions
2014-10-08	moult	Models for analysing moult in birds
2014-10-08	pvclust	Hierarchical Clustering with P-Values via Multiscale Bootstrap Resampling
2014-10-08	quantmod	Quantitative Financial Modelling Framework
2014-10-08	Rdsm	Threads Environment for R
2014-10-08	R.utils	Various programming utilities
2014-10-08	saps	Significance Analysis of Prognostic Signatures
2014-10-08	seqDesign	Simulation and group sequential monitoring of randomized multi-arm two-stage Phase IIb/III treatment efficacy trials with time-to-event endpoints
2014-10-08	sequenza	Copy number estimation from tumor genome sequencing data
2014-10-08	subselect	Selecting variable subsets
2014-10-07	CINID	Curculionidae INstar IDentification
2014-10-07	devtools	Tools to make developing R code easier
2014-10-07	dpcR	Digital PCR Analysis
2014-10-07	ibelief	An R Package for Implementing Belief Functions
2014-10-07	MareyMap	Estimation of meiotic recombination rates using marey maps
2014-10-07	mnormpow	Multivariate Normal Distributions with Power Integrand
2014-10-07	MTurkR	R Client for the MTurk Requester API
2014-10-07	nlme	Linear and Nonlinear Mixed Effects Models
2014-10-07	PerFit	Person Fit
2014-10-07	PLordprob	Multivariate Ordered Probit Model via Pairwise Likelihood
2014-10-07	qcc	Quality Control Charts
2014-10-07	sft	Functions for Systems Factorial Technology Analysis of Data
2014-10-07	ssym	Fitting Semi-parametric Symmetric Regression Models
2014-10-07	stringdist	Approximate string matching and string distance functions
2014-10-07	TEEReg	Trimmed Elemental Estimation for Linear Models
2014-10-07	TurtleGraphics	Turtle graphics in R
2014-10-07	VecStatGraphs3D	Vector analysis using graphical and analytical methods in 3D
2014-10-07	vegan3d	Static and dynamic 3D plots for vegan package
2014-10-06	COPASutils	Tools for processing COPAS large-particle flow cytometer data
2014-10-06	embryogrowth	Tools to Analyze the Thermal Reaction Norm of Embryo Growth
2014-10-06	fscaret	Automated caret feature selection
2014-10-06	GISTools	Some further GIS capabilities for R
2014-10-06	GMCM	Fast estimation of Gaussian Mixture Copula Models
2014-10-06	grofit	The package was developed to fit fit many growth curves obtained under different conditions
2014-10-06	lllcrc	Local Log-linear Models for Capture-Recapture
2014-10-06	MonetDB.R	Connect MonetDB to R
2014-10-06	mpt	Multinomial Processing Tree (MPT) Models
2014-10-06	mvprpb	Orthant Probability of the Multivariate Normal Distribution
2014-10-06	NB	Maximum Likelihood method in estimating effective population size from genetic data
2014-10-06	phenology	Tools to manage a parametric function that describes phenology
2014-10-06	pingr	Check If a Remote Computer is Up
2014-10-06	ProjectTemplate	Automates the creation of new statistical analysis projects
2014-10-06	repra	Renewable Energy Probability Resource Assessment Tool (REPRA)
2014-10-06	RMark	R Code for MARK Analysis
2014-10-06	SemiMarkov	Multi-States Semi-Markov Models
2014-10-06	snipEM	Snipping methods for robust estimation and clustering
2014-10-06	VLMC	VLMC – Variable Length Markov Chains
2014-10-06	YourCast	Forecasting age-sex-country-cause mortality rates
2014-10-06	ZIM	Zero-Inflated Models for Count Time Series with Excess Zeros
2014-10-05	catIrt	An R Package for Simulating IRT-Based Computerized Adaptive Tests
2014-10-05	ENMeval	Automated runs and evaluations of ecological niche models
2014-10-05	pbdMPI	Programming with Big Data – Interface to MPI
2014-10-05	rainfreq	Rainfall Frequency (Design Storm) Estimates from the US National Weather Service
2014-10-04	BMA	Bayesian Model Averaging
2014-10-04	DynNom	A Dynamic Nomogram for Linear and Generalized Linear Models as Shiny Applications
2014-10-04	ggvis	Interactive grammar of graphics
2014-10-04	numOSL	Numeric routines for optically stimulated luminescence dating
2014-10-04	qdap	Bridging the Gap Between Qualitative Data and Quantitative Analysis
2014-10-04	qdapTools	Tools for the qdap package
2014-10-04	R2HTML	HTML exportation for R objects
2014-10-04	saccades	Detection of Fixations in Eye-Tracking Data
2014-10-04	SightabilityModel	Wildlife Sightability Modeling
2014-10-04	simPH	Tools for Simulating and Plotting Quantities of Interest Estimated From Cox Proportional Hazards Models
2014-10-04	vec2dtransf	2D Cartesian Coordinate Transformation
2014-10-03	bigsplines	Smoothing Splines for Large Samples
2014-10-03	dawai	Discriminant analysis with additional information
2014-10-03	enpls	Ensemble Partial Least Squares (EnPLS) Regression
2014-10-03	gMCP	Graph Based Multiple Comparison Procedures
2014-10-03	HIBAG	HIBAG – HLA Genotype Imputation with Attribute Bagging
2014-10-03	msda	Multi-class Sparse Discriminant Analysis
2014-10-03	RobPer	Robust periodogram methods for irregularly sampled time series and robust periodicity detection methods
2014-10-03	semTools	Useful tools for structural equation modeling
2014-10-03	simsem	SIMulated Structural Equation Modeling
2014-10-03	splancs	Spatial and Space-Time Point Pattern Analysis
2014-10-02	carcass	Estimation of the number of fatalities from carcass searches
2014-10-02	ConConPiWiFun	Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
2014-10-02	copula	Multivariate Dependence with Copulas
2014-10-02	data.table	Extension of data.frame
2014-10-02	DDIwR	DDI with R
2014-10-02	fpc	Flexible procedures for clustering
2014-10-02	mboost	Model-Based Boosting
2014-10-02	mfp	Multivariable Fractional Polynomials
2014-10-02	mi	Missing Data Imputation and Model Checking
2014-10-02	multcomp	Simultaneous Inference in General Parametric Models
2014-10-02	mycor	Automatic Correlation and Regression Test in a Data Frame
2014-10-02	repfdr	Replicability Analysis for Multiple Studies of High Dimension
2014-10-02	rsm	Response-surface analysis
2014-10-02	seasonal	R interface to X-13ARIMA-SEATS
2014-10-02	shrink	Global, Parameterwise and Joint Post-Estimation Shrinkage
2014-10-02	spTimer	Spatio-Temporal Bayesian Modelling Using R
2014-10-02	stabs	Stability Selection with Error Control
2014-10-02	TED	Turbulence Time Series Event Detection and Classification
2014-10-02	WriteXLS	Cross-platform Perl based R function to create Excel 2003 (XLS) and Excel 2007 (XLSX) files
2014-10-01	cna	A Package for Coincidence Analysis (CNA)
2014-10-01	deducorrect	deducorrect: Deductive correction, deductive imputation, and deterministic correction
2014-10-01	distrom	Distributed Multinomial Regression
2014-10-01	eaf	Plots of the Empirical Attainment Function
2014-10-01	exsic	Convenience Functions for Botanists to Create Specimens Indices
2014-10-01	FuzzyNumbers	Tools to deal with fuzzy numbers
2014-10-01	gamlr	Gamma Lasso Regression
2014-10-01	kyotil	Utility Functions by Youyi & Krisz
2014-10-01	lazyeval	Lazy (Non-Standard) Evaluation
2014-10-01	measuRing	Detection and Control of Tree-Ring Widths on Scanned Image Sections of Dendrochronological Samples
2014-10-01	miniCRAN	Tools to create an internally consistent, mini version of CRAN with selected packages only
2014-10-01	RandomFields	Simulation and Analysis of Random Fields
2014-10-01	shiny	Web Application Framework for R
2014-10-01	SQDA	Sparse Quadratic Discriminant Analysis
2014-10-01	steepness	Testing Steepness of Dominance Hierarchies
2014-10-01	testthat	Testthat code. Tools to make testing fun :)
2014-10-01	TFDEA	TFDEA (Technology Forecasting using DEA)
2014-09-30	boot	Bootstrap Functions (originally by Angelo Canty for S)
2014-09-30	gvcm.cat	Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth effects in GLMs
2014-09-30	lavaan	Latent Variable Analysis
2014-09-30	MASS	Support Functions and Datasets for Venables and Ripley's MASS
2014-09-30	mco	Multiple Criteria Optimization Algorithms and Related Functions
2014-09-30	mdsdt	Functions for Analysis of Data with General Recognition Theory
2014-09-30	pipeR	Pipe operator and function
2014-09-30	protViz	Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
2014-09-30	rbamtools	An R package for reading and writing BAM (Binary alignment) files
2014-09-30	RHive	R and Hive
2014-09-29	activity	Animal Activity Statistics
2014-09-29	aLFQ	An R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
2014-09-29	atmcmc	Automatically Tuned Markov Chain Monte Carlo
2014-09-29	chipPCR	Toolkit of helper functions to pre-process amplification data
2014-09-29	corpcor	Efficient Estimation of Covariance and (Partial) Correlation
2014-09-29	dendsort	Modular Leaf Ordering Methods for Dendrogram Nodes
2014-09-29	DoE.base	Full factorials, orthogonal arrays and base utilities for DoE packages
2014-09-29	DoE.wrapper	Wrapper package for design of experiments functionality
2014-09-29	EffectStars	Visualization of Categorical Response Models
2014-09-29	FeedbackTS	Analysis of Feedback in Time Series
2014-09-29	fSRM	Social Relations Analyses with roles ("Family SRM")
2014-09-29	gapmap	Functions for Drawing Gapped Cluster Heatmap with ggplot2
2014-09-29	gender	Gender: predict gender from names using historical data
2014-09-29	ggdendro	Tools for extracting dendrogram and tree diagram plot data for use with ggplot2
2014-09-29	GPFDA	Apply Gaussian Process in Functional data analysis
2014-09-29	hierfstat	Estimation and tests of hierarchical F-statistics
2014-09-29	httpRequest	Basic HTTP Request
2014-09-29	log4r	A simple logging system for R, based on log4j
2014-09-29	LSAfun	Applied Latent Semantic Analysis (LSA) functions
2014-09-29	magicaxis	Pretty scientific plotting with minor-tick and log minor-tick support
2014-09-29	nleqslv	Solve systems of non linear equations
2014-09-29	RcmdrPlugin.EZR	R Commander Plug-in for the EZR (Easy R) Package
2014-09-29	Rcpp	Seamless R and C++ Integration
2014-09-29	rFDSN	Get Seismic Data from the International Federation of Digital Seismograph Networks
2014-09-29	rjstat	Read and write JSON-stat data sets
2014-09-29	robustDA	Robust Mixture Discriminant Analysis
2014-09-29	ScottKnott	The ScottKnott Clustering Algorithm
2014-09-29	signal.hsmm	Predict Presence of Signal Peptides
2014-09-29	soiltexture	Functions for soil texture plot, classification and transformation
2014-09-29	sprint	Simple Parallel R INTerface
2014-09-29	yuima	The YUIMA Project package for SDEs
2014-09-28	DoseFinding	Planning and Analyzing Dose Finding experiments
2014-09-28	ecoretriever	R Interface to the EcoData Retriever
2014-09-28	expands	ExPANdS
2014-09-28	HotDeckImputation	Hot Deck Imputation Methods for Missing Data
2014-09-28	LARF	Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects
2014-09-28	lm.beta	Add Standardized Regression Coefficients to lm-Objects
2014-09-28	mc2d	Tools for Two-Dimensional Monte-Carlo Simulations
2014-09-28	meboot	Maximum Entropy Bootstrap for Time Series
2014-09-28	microbenchmark	Accurate Timing Functions
2014-09-28	neural	Neural Networks
2014-09-28	pdfetch	Fetch economic and financial time series data from public sources
2014-09-28	readMzXmlData	Reads Mass Spectrometry Data in mzXML Format
2014-09-28	sweidnumbr	Handling of Swedish Identity Numbers
2014-09-27	BrailleR	Improved access for blind useRs
2014-09-27	MetFns	Analysis of Visual Meteor Data
2014-09-27	mrds	Mark-Recapture Distance Sampling (mrds)
2014-09-27	oro.pet	Rigorous - Positron Emission Tomography
2014-09-27	propagate	Propagation of Uncertainty
2014-09-27	trustOptim	Trust region nonlinear optimization, efficient for sparse Hessians
2014-09-26	ADDT	A Package for Analysis of Accelerated Destructive Degradation Test Data
2014-09-26	alr4	Data to accompany Applied Linear Regression 4rd edition
2014-09-26	aplpack	Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
2014-09-26	cape	Combined analysis of pleiotropy and epistasis
2014-09-26	copBasic	Basic Theoretical Copula, Empirical Copula, and Various Utility Functions
2014-09-26	GENLIB	Genealogical Data Analysis
2014-09-26	GenWin	Spline Based Window Boundaries for Genomic Analyses
2014-09-26	glcm	Calculate textures from grey-level co-occurrence matrices (GLCMs) in R
2014-09-26	Guerry	Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
2014-09-26	iC10	A copy number and expression-based classifier for breast tumours
2014-09-26	iC10TrainingData	Training datasets for iC10 package
2014-09-26	jSonarR	jSonar Analytics Platform API for R
2014-09-26	lmSupport	Support for Linear Models
2014-09-26	mime	Map filenames to MIME types
2014-09-26	oc	OC Roll Call Analysis Software
2014-09-25	agrmt	Calculate agreement
2014-09-25	betareg	Beta Regression
2014-09-25	causaleffect	Deriving Expressions of Joint Interventional Distributions in Causal Models
2014-09-25	dcGOR	Analysis of ontologies and protein domain annotations
2014-09-25	exactci	Exact P-values and Matching Confidence Intervals for simple Discrete Parametric Cases
2014-09-25	glarma	Generalized Linear Autoregressive Moving Average Models
2014-09-25	GSE	Robust Estimation of Multivariate Location and Scatter in the Presence of Missing Data
2014-09-25	HiddenMarkov	Hidden Markov Models
2014-09-25	ivprobit	Instrumental variables probit model
2014-09-25	Morpho	Calculations and visualisations related to Geometric Morphometrics
2014-09-25	qqman	Q-Q and manhattan plots for GWAS data
2014-09-25	SPREDA	Statistical Package for Reliability Data Analysis
2014-09-25	virtualspecies	Generation of Virtual Species Distributions
2014-09-24	birdring	Methods to analyse ring re-encounter data
2014-09-24	Compind	Composite indicators functions
2014-09-24	DBI	R Database Interface
2014-09-24	Delaporte	Statistical functions for the Delaporte distribution
2014-09-24	deming	Deming, Thiel-Sen and Passing-Bablock Regression
2014-09-24	flexmix	Flexible Mixture Modeling
2014-09-24	forecast	Forecasting functions for time series and linear models
2014-09-24	hddtools	Hydrological Data Discovery Tools
2014-09-24	kofnGA	A genetic algorithm for fixed-size subset selection
2014-09-24	mmand	Mathematical morphology in any number of dimensions
2014-09-24	NHMM	Bayesian NHMM modeling (multiple time series)
2014-09-24	parsedate	Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formats
2014-09-24	qdapRegex	Regular Expression Removal, Extraction, and Replacement Tools
2014-09-24	rentrez	Entrez in R
2014-09-24	RSurvey	Analysis of Spatially Distributed Data
2014-09-24	scam	Shape constrained additive models
2014-09-24	shinyFiles	A server-side file system viewer for shiny
2014-09-24	SimplicialCubature	Numerical integration of functions over simplices
2014-09-24	VennDiagram	Generate high-resolution Venn and Euler plots
2014-09-23	datacheck	Tools for checking data consistency
2014-09-23	lessR	Less Code, More Results
2014-09-23	pvsR	An R package to interact with the Project Vote Smart API for scientific research
2014-09-23	Rvcg	Manipulations of triangular meshes (smoothing, quadric edge collapse decimation, im- and export of various mesh file-formats, cleaning, etc.) based on the VCGLIB API
2014-09-23	SemiPar	Semiparametic Regression
2014-09-23	wnominate	WNOMINATE Roll Call Analysis Software
2014-09-22	dendextend	Extending R's dendrogram functionality
2014-09-22	DescTools	Tools for descriptive statistics
2014-09-22	dnet	Integrative analysis of omics data in terms of network, evolution and ontology
2014-09-22	documair	Automatic Documentation for R packages
2014-09-22	flexsurv	Flexible parametric survival and multi-state models
2014-09-22	IBrokers	R API to Interactive Brokers Trader Workstation
2014-09-22	maps	Draw Geographical Maps
2014-09-22	mpmi	Mixed-pair mutual information estimators
2014-09-22	polysat	Tools for Polyploid Microsatellite Analysis
2014-09-22	predictmeans	Calculate Predicted Means for Linear Models
2014-09-22	proxy	Distance and Similarity Measures
2014-09-22	recosystem	Recommender System using Matrix Factorization
2014-09-22	sglasso	Lasso method for RCON(V,E) models
2014-09-21	archivist	Tools for storing, restoring and searching for R objects
2014-09-21	CGP	Composite Gaussian process models
2014-09-21	RcmdrPlugin.MA	Graphical User Interface for Conducting Meta-Analyses in R
2014-09-21	rgeos	Interface to Geometry Engine - Open Source (GEOS)
2014-09-21	rmngb	rmngb Miscellaneous
2014-09-21	samplesize4surveys	Sample size calculations for complex surveys
2014-09-21	sendmailR	send email using R
2014-09-21	trotter	Pseudo-Vectors Containing All Permutations, Combinations and Subsets of Objects Taken from a Vector
2014-09-20	audited	Automatic Tracing and Display of Changes to Row Count
2014-09-20	Density.T.HoldOut	Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
2014-09-20	llama	Leveraging Learning to Automatically Manage Algorithms
2014-09-20	mitools	Tools for multiple imputation of missing data
2014-09-20	MST	Multivariate Survival Trees
2014-09-20	OrdLogReg	Ordinal Logic Regression
2014-09-20	randomizationInference	Flexible Randomization-Based Inference
2014-09-20	RcppOctave	Seamless Interface to Octave – and Matlab
2014-09-20	REDCapR	Interaction between R and REDCap
2014-09-20	shapes	Statistical shape analysis
2014-09-20	vdmR	Visual Data Mining Tools for R
2014-09-19	allelematch	Identifying unique multilocus genotypes where genotyping error and missing data may be present
2014-09-19	beanplot	Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
2014-09-19	BEANSP	Bayesian Estimate of Age-specific Nest Survival Probabilities
2014-09-19	BOIN	Bayesian Optimal Interval Design for Phase I Clinical Trials
2014-09-19	bReeze	Functions for wind resource assessment
2014-09-19	comclim	Community climate statistics
2014-09-19	edgeRun	More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
2014-09-19	gdsfmt	R Interface to CoreArray Genomic Data Structure (GDS) files
2014-09-19	gmailr	Access the Gmail RESTful API from R
2014-09-19	iki.dataclim	Consistency, Homogeneity and Summary Statistics of Climatological Data
2014-09-19	intervals	Tools for working with points and intervals
2014-09-19	LogicForest	Logic Forest
2014-09-19	multipleNCC	Weighted Cox-regression for nested case-control data
2014-09-19	nat.nblast	NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering
2014-09-19	nlWaldTest	Wald Test of nonlinear restrictions for regression parameters
2014-09-19	opentraj	Tools for Creating and Analysing Air Trajectory Data
2014-09-19	Rhpc	An R package for High-Performance Computing
2014-09-19	RidgeFusion	R Package for Ridge Fusion in Statistical Learning
2014-09-19	RMOA	Connect R with MOA for Massive Online Analysis
2014-09-19	rms	Regression Modeling Strategies
2014-09-19	RUnit	R Unit test framework
2014-09-19	sdmvspecies	Create virtual species for species distribution modelling
2014-09-19	SmoothHazard	Fitting illness-death model for interval-censored data
2014-09-19	spatialnbda	Performs spatial NBDA in a Bayesian context
2014-09-19	spdep	Spatial dependence: weighting schemes, statistics and models
2014-09-19	spMC	Continuous Lag Spatial Markov Chains
2014-09-18	adaptDA	Adaptive Mixture Discriminant Analysis
2014-09-18	bbo	Biogeography-Based Optimization
2014-09-18	betategarch	Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models
2014-09-18	boral	Bayesian Ordination and Regression AnaLysis
2014-09-18	clhs	Conditioned Latin Hypercube Sampling
2014-09-18	corHMM	Analysis of binary character evolution
2014-09-18	DirichletReg	Dirichlet Regression in R
2014-09-18	gfcanalysis	Tools for working with Hansen et al. 2013 Global Forest Change dataset
2014-09-18	gplots	Various R programming tools for plotting data
2014-09-18	ivbma	Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
2014-09-18	mapmisc	Utilities for producing maps
2014-09-18	modTempEff	Modelling temperature effects using time series data
2014-09-18	paleotree	Paleontological and Phylogenetic Analyses of Evolution
2014-09-18	powerr	Analysis of Power System
2014-09-18	refGenome	Gene And Splice Site Annotation Using Annotation Data From Ensembl And UCSC Genome Browsers
2014-09-18	repmis	A collection of miscellaneous tools for reproducible research with R
2014-09-18	rgdal	Bindings for the Geospatial Data Abstraction Library
2014-09-18	Rtsne	T-distributed Stochastic Neighbor Embedding using Barnes-Hut implementation
2014-09-18	TreeSim	Simulating trees under the birth-death model
2014-09-18	uskewFactors	Model-based clustering via mixtures of unrestricted skew-t factor analyzer models
2014-09-17	coin	Conditional Inference Procedures in a Permutation Test Framework
2014-09-17	fCopulae	Rmetrics - Bivariate Dependence Structures with Copulae
2014-09-17	gamlss	Generalised Additive Models for Location Scale and Shape
2014-09-17	gamlss.dist	Distributions to be used for GAMLSS modelling
2014-09-17	qgtools	Tools for Quantitative Genetics Data Analyses
2014-09-17	RadioSonde	Tools for plotting skew-T diagrams and wind profiles
2014-09-17	rmarkdown	Dynamic Documents for R
2014-09-17	RMOAjars	External jars required for package RMOA
2014-09-17	simsalapar	Tools for Simulation Studies in Parallel with R
2014-09-16	compute.es	Compute Effect Sizes
2014-09-16	Distance	A simple way to fit detection functions to distance sampling data and calculate abundance/density for biological populations
2014-09-16	dlm	Bayesian and Likelihood Analysis of Dynamic Linear Models
2014-09-16	dsm	Density surface modelling of distance sampling data
2014-09-16	fRegression	Rmetrics - Regression Based Decision and Prediction
2014-09-16	GuardianR	The Guardian API Wrapper
2014-09-16	hypergea	Hypergeometric tests
2014-09-16	LiblineaR	Linear Predictive Models Based On The liblinear C/C++ Library
2014-09-16	m4fe	Models for Financial Economics
2014-09-16	MatchingFrontier	Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
2014-09-16	mclust	Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
2014-09-16	nat.templatebrains	NeuroAnatomy Toolbox (nat) Extension for Handling Template Brains
2014-09-16	ncdf4	Interface to Unidata netCDF (version 4 or earlier) format data files
2014-09-16	nontarget	Detecting, Combining and Filtering Isotope, Adduct and Homologue Series Relations in High-Resolution Mass Spectrometry (HRMS) Data
2014-09-16	PerformanceAnalytics	Econometric tools for performance and risk analysis
2014-09-16	polidata	Political Data Interface in R
2014-09-16	qat	Quality Assurance Toolkit
2014-09-16	smoother	Smoother
2014-09-16	SSDforR	SSD for R to analyze single system data
2014-09-16	tab	Functions for Creating Summary Tables for Statistical Reports
2014-09-16	UPMASK	Unsupervised Photometric Membership Assignment in Stellar Clusters
2014-09-15	binequality	Methods for Analyzing Binned Income Data
2014-09-15	demography	Forecasting mortality, fertility, migration and population data
2014-09-15	fmsb	Functions for medical statistics book with some demographic data
2014-09-15	genlasso	Path algorithm for generalized lasso problems
2014-09-15	hot.deck	Multiple Hot-deck Imputation
2014-09-15	investr	Inverse Estimation/Calibration Functions
2014-09-15	MissingDataGUI	A GUI for Missing Data Exploration
2014-09-15	netweavers	NetWeAvers: Weighted Averages for Networks
2014-09-15	nonnest2	Tests of non-nested models
2014-09-15	PerMallows	Permutations and Mallows distributions
2014-09-15	propOverlap	Feature (gene) selection based on the Proportional Overlapping Scores
2014-09-15	qpcR	Modelling and analysis of real-time PCR data
2014-09-15	rredis	Redis client for R
2014-09-15	Ryacas	R interface to the yacas computer algebra system
2014-09-15	SOR	Estimation using Sequential Offsetted Regression
2014-09-14	agop	Aggregation Operators and Preordered Sets
2014-09-14	DLMtool	Data-Limited Methods Toolkit
2014-09-14	EDISON	Network Reconstruction and Changepoint Detection
2014-09-14	geoR	Analysis of geostatistical data
2014-09-14	KernSmooth	Functions for kernel smoothing for Wand & Jones (1995)
2014-09-14	multigroup	methods for multigroup data analysis
2014-09-14	RcmdrPlugin.coin	Rcmdr Coin Plug-In
2014-09-14	RH2	DBI/RJDBC interface to h2 Database
2014-09-14	RPMM	Recursively Partitioned Mixture Model
2014-09-13	geepack	Generalized Estimating Equation Package
2014-09-13	HH	Statistical Analysis and Data Display: Heiberger and Holland
2014-09-13	iBATCGH	Integrative Bayesian Analysis of Transcriptomic and CGH data
2014-09-13	Lahman	Sean Lahman's Baseball Database
2014-09-13	phyloland	Modelling Competitive Exclusion and Limited Dispersal in a Statistical Phylogeographic Framework
2014-09-13	referenceIntervals	Reference Intervals
2014-09-12	Mobilize	Mobilize plots and functions
2014-09-12	nettools	A Network Comparison Framework
2014-09-12	partykit	A Toolkit for Recursive Partytioning
2014-09-12	PepPrep	Insilico peptide mutation, digestion and homologous comparison
2014-09-12	PReMiuM	Dirichlet Process Bayesian Clustering, Profile Regression
2014-09-12	RGraphics	Data and Functions from the book R Graphics, Second Edition
2014-09-12	RhpcBLASctl	Control the number of threads on BLAS for R
2014-09-12	seewave	Sound analysis and synthesis
2014-09-12	SimComp	Simultaneous Comparisons for Multiple Endpoints
2014-09-12	treatSens	Sensitivity analysis for causal inference
2014-09-12	unittest	TAP-compliant unit testing
2014-09-12	WhopGenome	High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats
2014-09-12	xtable	Export tables to LaTeX or HTML
2014-09-12	zCompositions	Imputation of Zeros and Nondetects in Compositional Data Sets
2014-09-11	DatABEL	file-based access to large matrices stored on HDD in binary format
2014-09-11	FRESA.CAD	FeatuRE Selection Algorithms for Computer Aided Diagnosis
2014-09-11	funFEM	Clustering in the Discriminative Functional Subspace
2014-09-11	glmmLasso	Variable selection for generalized linear mixed models by L1-penalized estimation
2014-09-11	intsvy	International Assessment Data Manager
2014-09-11	knnIndep	Independence tests and benchmarks
2014-09-11	lcmm	Estimation of Extended Mixed Models Using Latent Classes and Latent Processes
2014-09-11	lefse	Phylogenetic and Functional Analyses for Ecology
2014-09-11	OjaNP	Multivariate Methods Based on the Oja Median and Related Concepts
2014-09-11	pkgKitten	Create Simple Packages Which Do Not Upset R CMD check
2014-09-11	RankResponse	Ranking Responses in a Single Response Question or a Multiple Response Question
2014-09-11	rChoiceDialogs	rChoiceDialogs collection
2014-09-11	rsubgroup	Subgroup Discovery and Analytics
2014-09-10	caTools	Tools: moving window statistics, GIF, Base64, ROC AUC, etc
2014-09-10	catR	Procedures to generate IRT adaptive tests (CAT)
2014-09-10	cgam	Constrained Generalized Additive Model
2014-09-10	cmvnorm	Complex multivariate Gaussian distribution
2014-09-10	dismo	Species distribution modeling
2014-09-10	dunn.test	Dunn's test of multiple comparisons using rank sums
2014-09-10	eegkitdata	Data for package eegkit
2014-09-10	ForwardSearch	Forward Search using asymptotic theory
2014-09-10	GGMselect	Gaussian Graphs Models selection
2014-09-10	hwriter	HTML Writer - Outputs R objects in HTML format
2014-09-10	isotone	Active set and generalized PAVA for isotone optimization
2014-09-10	mmcm	Modified Maximum Contrast Method
2014-09-10	mnlogit	Multinomial Logit Model
2014-09-10	Ohmage	R Client for Ohmage 2 server
2014-09-10	RcmdrPlugin.IPSUR	An IPSUR Plugin for the R Commander
2014-09-10	RDML	Importing real-time thermo cycler (qPCR) data from RDML format files
2014-09-10	saery	Small Area Estimation for Rao and Yu Model
2014-09-10	segmented	Segmented relationships in regression models with breakpoints/changepoints estimation
2014-09-10	Sim.DiffProc	Simulation of Diffusion Processes
2014-09-09	BGPhazard	Markov beta and gamma processes for modeling hazard rates
2014-09-09	bpkde	Back-Projected Kernel Density Estimation
2014-09-09	CircE	Circumplex models Estimation
2014-09-09	couchDB	Connect and work with couchDB databases
2014-09-09	domino	Domino Data Lab R console bindings
2014-09-09	fcros	FCROS for detecting differentially expressed genes
2014-09-09	geosphere	Spherical Trigonometry
2014-09-09	globalOptTests	Objective functions for benchmarking the performance of global optimization algorithms
2014-09-09	micropan	Microbial Pan-genome Analysis
2014-09-09	ngspatial	Fitting the centered autologistic and sparse spatial generalized linear mixed models for areal data
2014-09-09	spam	SPArse Matrix
2014-09-09	taxize	Taxonomic information from around the web
2014-09-09	TripleR	Social Relation Model (SRM) analyses for single or multiple round-robin groups
2014-09-08	accrued	Visualization tools for partially accruing data
2014-09-08	anacor	Simple and Canonical Correspondence Analysis
2014-09-08	astro	Astronomy Functions, Tools and Routines
2014-09-08	easyanova	Analysis of variance and other important complementary analyzes
2014-09-08	emulator	Bayesian emulation of computer programs
2014-09-08	funHDDC	Model-based clustering in group-specific functional subspaces
2014-09-08	hiddenf	Conduct the F test for hidden additivity in two-factor experiments
2014-09-08	htmltools	Tools for HTML
2014-09-08	ibd	INCOMPLETE BLOCK DESIGNS
2014-09-08	lunar	Lunar Phase & Distance, Seasons and Other Environmental Factors
2014-09-08	minque	An R Package for Linear Mixed Model Analyses
2014-09-08	MODISTools	MODIS Subsetting Tools
2014-09-08	operators	Additional binary operators for the R language
2014-09-08	RcmdrPlugin.EBM	Rcmdr Evidence Based Medicine Plug-In package
2014-09-08	slackr	Send messages, images, R objects and files to Slack.com channels/users
2014-09-08	SNFtool	Similarity Network Fusion
2014-09-08	tlm	Effects under Linear, Logistic and Poisson Regression Models with Transformed Variables
2014-09-07	bionetdata	Biological and chemical data networks
2014-09-07	copCAR	Fitting the copCAR regression model for discrete areal data
2014-09-07	evmix	Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
2014-09-07	GUILDS	Implementation of sampling formulas for the unified neutral model of biodiversity and biogeography, with or without guild structure
2014-09-07	JAGUAR	Joint Analysis of Genotype and Group-specific Variability Using a Novel Score Test Approach to Map eQTL
2014-09-07	OpenRepGrid	Tools to analyse repertory grid data
2014-09-07	PerfMeas	PerfMeas: Performance Measures for ranking and classification tasks
2014-09-07	rattle	Graphical user interface for data mining in R
2014-09-07	Rsomoclu	R package for somoclu
2014-09-07	rucm	Implementation of Unobserved Components Model (UCM) in R
2014-09-07	xgboost	eXtreme Gradient Boosting
2014-09-06	asbio	A collection of statistical tools for biologists
2014-09-06	eggCounts	Hierarchical modelling of faecal egg counts
2014-09-06	fMultivar	Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
2014-09-06	GDAtools	A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis
2014-09-06	logcondens	Estimate a Log-Concave Probability Density from iid Observations
2014-09-06	OrdFacReg	Least Squares, Logistic, and Cox-Regression with Ordered Predictors
2014-09-06	pyramid	Functions to draw population pyramid
2014-09-06	RcmdrPlugin.temis	Graphical Integrated Text Mining Solution
2014-09-06	selectMeta	Estimation of Weight Functions in Meta Analysis
2014-09-05	bartMachine	Bayesian Additive Regression Trees
2014-09-05	caseMatch	Identify similar cases for qualitative case studies
2014-09-05	GxM	Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
2014-09-05	pec	Prediction Error Curves for Survival Models
2014-09-05	powerGWASinteraction	Power Calculations for GxE and GxG Interactions for GWAS
2014-09-05	preseqR	Predicting Species Accumulation
2014-09-05	readbitmap	Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG)
2014-09-05	REBayes	Empirical Bayes Estimation and Inference in R
2014-09-05	rebmix	The Rebmix Package
2014-09-05	REPPlab	R interface to EPP-lab, a Java program for exploratory projection pursuit
2014-09-05	Rmpfr	R MPFR - Multiple Precision Floating-Point Reliable
2014-09-05	structSSI	Multiple Testing for Hypotheses with Hierarchical or Group Structure
2014-09-04	BCA	Business and Customer Analytics
2014-09-04	cluster	Cluster Analysis Extended Rousseeuw et al
2014-09-04	ClustVarLV	Clustering of variables around Latent Variables
2014-09-04	cooptrees	Cooperative aspects of optimal trees in weighted graphs
2014-09-04	CopulaRegression	Bivariate Copula Based Regression Models
2014-09-04	Cprob	Conditional probability function of a competing event
2014-09-04	Ecdat	Data sets for econometrics
2014-09-04	haplo.stats	Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
2014-09-04	helloJavaWorld	Hello Java World
2014-09-04	idr	Irreproducible discovery rate
2014-09-04	insuranceData	A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance
2014-09-04	kmi	Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
2014-09-04	MCDA	MCDA
2014-09-04	miscset	Miscellaneous Tools Set
2014-09-04	MRCV	Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
2014-09-04	parcor	Regularized estimation of partial correlation matrices
2014-09-04	plsdof	Degrees of Freedom and Statistical Inference for Partial Least Squares Regression
2014-09-04	PP	Person Parameter estimation
2014-09-04	ppls	Penalized Partial Least Squares
2014-09-04	pqantimalarials	web tool for estimating under-five deaths caused by poor-quality antimalarials in sub-Saharan Africa
2014-09-04	RcmdrMisc	R Commander Miscellaneous Functions
2014-09-04	RcmdrPlugin.BCA	Rcmdr Plug-In for Business and Customer Analytics
2014-09-04	sanon	Stratified Analysis with Nonparametric covariable adjustment
2014-09-04	SDaA	Sampling: Design and Analysis
2014-09-04	sparseSEM	Sparse-aware Maximum Likelihood for Structural Equation Models
2014-09-04	subrank	Computes copula using ranks and subsampling
2014-09-03	coreTDT	TDT for compound heterozygous and recessive models
2014-09-03	DNAtools	Tools for analysing forensic genetic DNA data
2014-09-03	docopt	docopt, command-line interface specification language
2014-09-03	GPfit	Gaussian Processes Modeling
2014-09-03	jaatha	A Fast Parameter Estimation Method for Evolutionary Biology
2014-09-03	logitchoice	Fitting l2-regularized logit choice models via generalized gradient descent
2014-09-03	mixAK	Multivariate normal mixture models and mixtures of generalized linear mixed models including model based clustering
2014-09-03	MPV	Data Sets from Montgomery, Peck and Vining's Book
2014-09-03	MSIseq	Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
2014-09-03	nabor	Wraps libnabo, a fast K Nearest Neighbour library for low dimensions
2014-09-03	NCmisc	Miscellaneous general purpose functions
2014-09-03	packrat	A dependency management system for projects and their R package dependencies
2014-09-03	tolerance	Functions for calculating tolerance intervals
2014-09-03	upclass	Updated Classification Methods using Unlabeled Data
2014-09-03	UsingR	Data sets, etc. for the text "Using R for Introductory Statistics", second edition
2014-09-03	wgaim	Whole Genome Average Interval Mapping for QTL detection using mixed models
2014-09-02	ds	Descriptive Statistics
2014-09-02	easingr	Fetch and plot credit easing policy tool data
2014-09-02	enviPick	Peak picking for high resolution mass spectrometry data
2014-09-02	exactmeta	Exact fixed effect meta analysis
2014-09-02	Frames2	Estimation in dual frame surveys
2014-09-02	httr	Tools for working with URLs and HTTP
2014-09-02	ica	Independent Component Analysis
2014-09-02	mht	Multiple Hypotheses Testing For Variable Selection
2014-09-02	nor1mix	Normal (1-d) Mixture Models (S3 Classes and Methods)
2014-09-02	optrees	Optimal Trees in Weighted Graphs
2014-09-02	prodlim	Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis
2014-09-02	rappdirs	Application directories: determine where to save data, caches and logs
2014-09-02	roxygen2	In-source documentation for R
2014-09-02	rpg	Easy interface to advanced PostgreSQL features
2014-09-02	SCRT	Single-Case Randomization Tests
2014-09-02	SCVA	Single-Case Visual Analysis
2014-09-02	StereoMorph	Stereo Camera Calibration and Reconstruction
2014-09-01	agricolae	Statistical Procedures for Agricultural Research
2014-09-01	chebpol	Multivariate Chebyshev interpolation
2014-09-01	e1071	Misc Functions of the Department of Statistics (e1071), TU Wien
2014-09-01	geoBayes	Analysis of geostatistical data using Bayes and empirical Bayes methods
2014-09-01	heavy	Package for robust estimation using heavy-tailed distributions
2014-09-01	lgarch	Simulation and estimation of log-GARCH models
2014-09-01	mixOmics	Omics Data Integration Project
2014-09-01	OpasnetUtils	Utility functions for dealing with data in Opasnet (www.opasnet.org) environment
2014-09-01	pdR	panel data regression
2014-09-01	RankAggreg	Weighted rank aggregation
2014-09-01	Rbitcoin	R & bitcoin integration
2014-09-01	RCEIM	RCEIM - R Cross Entropy Inspired Method for Optimization
2014-09-01	reader	A suite of functions to flexibly read data from files
2014-09-01	StAMPP	Statistical Analysis of Mixed Ploidy Populations
2014-09-01	Tampo	Tools for the Analysis of Microchemical Profiles from Otoliths
2014-09-01	traitr	An interface for creating GUIs modeled in part after traits UI module for python
2014-09-01	wordnet	WordNet Interface
2014-08-31	chemosensors	A tool for the design of synthetic experiments in machine olfaction
2014-08-31	chords	Estimation in respondent driven samples
2014-08-31	lbfgs	Limited-memory BFGS Optimization
2014-08-31	ngramr	Retrieve and plot Google n-gram data
2014-08-31	pmg	Poor Man's GUI
2014-08-31	rcdklibs	rcdklib - CDK libraries packaged for R
2014-08-31	RNetCDF	R Interface to NetCDF Datasets
2014-08-30	apc	Age-period-cohort analysis
2014-08-30	jvmr	Integration of R, Java, and Scala
2014-08-30	mcIRT	IRT models for multiple choice items (mcIRT)
2014-08-30	nsRFA	Non-supervised Regional Frequency Analysis
2014-08-30	survivalMPL	Penalised Maximum Likelihood for Survival Analysis Models
2014-08-30	TDMR	Tuned Data Mining in R
2014-08-29	BIOM.utils	Utilities for the BIOM (Biological Observation Matrix) Format
2014-08-29	compendiumdb	Tools for Storage and Retrieval of Gene Expession Data
2014-08-29	corrgram	Plot a correlogram
2014-08-29	decompr	Export Decomposition (Wang-Wei-Zhu and source)
2014-08-29	Eplot	Plotting longitudinal series
2014-08-29	FreeSortR	Free Sorting data analysis
2014-08-29	heatmap3	A improved heatmap package
2014-08-29	icamix	Estimation of ICA Mixture Models
2014-08-29	iosmooth	Functions for smoothing with infinite order flat-top kernels
2014-08-29	lakemorpho	Lake morphometry in R
2014-08-29	mgcv	Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
2014-08-29	MGSDA	Multi-Group Sparse Discriminant Analysis
2014-08-29	mme	Multinomial Mixed Effects Models
2014-08-29	psychotools	Infrastructure for Psychometric Modeling
2014-08-29	psychotree	Recursive Partitioning Based on Psychometric Models
2014-08-29	raincpc	Obtain and Analyze Rainfall Data from the Climate Prediction Center
2014-08-29	Rcapture	Loglinear Models for Capture-Recapture Experiments
2014-08-29	RcmdrPlugin.FactoMineR	Graphical User Interface for FactoMineR
2014-08-29	riverplot	Sankey or ribbon plots
2014-08-29	sns	Stochastic Newton Sampler (SNS)
2014-08-29	SQUAREM	Squared extrapolation methods for accelerating fixed-point iterations
2014-08-29	turboEM	A Suite of Convergence Acceleration Schemes for EM, MM and other fixed-point algorithms
2014-08-29	vows	Voxelwise semiparametrics
2014-08-28	bfast	Breaks For Additive Season and Trend (BFAST)
2014-08-28	BioStatR	Initiation à la Statistique avec R
2014-08-28	bvarsv	Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
2014-08-28	cgAUC	Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it
2014-08-28	cheddar	Analysis and visualisation of ecological communities
2014-08-28	compareGroups	Descriptive analysis by groups
2014-08-28	effsize	Efficient effect size computation
2014-08-28	FactoMineR	Multivariate Exploratory Data Analysis and Data Mining with R
2014-08-28	fastR	Data sets and utilities for Foundations and Applications of Statistics by R Pruim
2014-08-28	georob	Robust Geostatistical Analysis of Spatial Data
2014-08-28	gWidgets	gWidgets API for building toolkit-independent, interactive GUIs
2014-08-28	ifultools	Insightful Research Tools
2014-08-28	LatticeKrig	Multiresolution Kriging based on Markov random fields
2014-08-28	QuantifQuantile	Estimation of conditional quantiles using optimal quantization
2014-08-28	rAvis	Interface to the bird-watching datasets at proyectoavis.com
2014-08-28	RcmdrPlugin.DoE	R Commander Plugin for (industrial) Design of Experiments
2014-08-28	Rlabkey	Data exchange between R and LabKey Server
2014-08-28	Runuran	R interface to the UNU.RAN random variate generators
2014-08-28	trajectories	Classes and methods for trajectory data
2014-08-27	arm	Data Analysis Using Regression and Multilevel/Hierarchical Models
2014-08-27	blkergm	Fitting block ERGM given the block structure on social networks
2014-08-27	dotenv	Load environment variables from .env
2014-08-27	falsy	Define truthy and falsy values
2014-08-27	fwsim	Fisher-Wright Population Simulation
2014-08-27	GMD	Generalized Minimum Distance of distributions
2014-08-27	GoFKernel	GoFKernel: Testing Goodness-of-fit with the Kernel Density Estimator
2014-08-27	gsubfn	Utilities for strings and function arguments
2014-08-27	lmeVarComp	Testing for a subset of variance components in linear mixed models
2014-08-27	MultiSV	MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
2014-08-27	pamr	Pam: prediction analysis for microarrays
2014-08-27	pscl	Political Science Computational Laboratory, Stanford University
2014-08-27	ptinpoly	Point-In-Polyhedron Test (2D and 3D)
2014-08-27	R.filesets	Easy handling of and access to files organized in structured directories
2014-08-27	SelvarMix	Regularization for variable selection in model-based clustering and discriminant analysis
2014-08-27	SemiParSampleSel	Semiparametric Sample Selection Modelling with Continuous Response
2014-08-27	shopifyr	An R Interface to the Shopify API
2014-08-27	statebins	statebins is an alternative to choropleth maps for USA States
2014-08-26	BoolNet	Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
2014-08-26	BTSPAS	Bayesian Time-Strat. Population Analysis
2014-08-26	cents	Censored time series
2014-08-26	ecoengine	Programmatic interface to the API serving UC Berkeley's Natural History Data
2014-08-26	emplik	Empirical likelihood ratio for censored/truncated data
2014-08-26	extRemes	Extreme Value Analysis
2014-08-26	GGally	Extension to ggplot2
2014-08-26	gmatrix	An R Package for Harnessing GPU Power
2014-08-26	HistogramTools	Utility Functions for R Histograms
2014-08-26	HTSCluster	Clustering high throughput sequencing (HTS) data
2014-08-26	KANT	Package to identify and sort genes overexpressed
2014-08-26	ks	Kernel smoothing
2014-08-26	MBmca	Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
2014-08-26	minerva	minerva: Maximal Information-Based Nonparametric Exploration R package for Variable Analysis
2014-08-26	phytools	Phylogenetic Tools for comparative biology (and other things)
2014-08-26	pubmed.mineR	Text mining of PubMed Abstracts
2014-08-26	randomForestSRC	Random Forests for Survival, Regression and Classification (RF-SRC)
2014-08-26	sensitivity	Sensitivity Analysis
2014-08-26	spcadjust	Functions for calibrating control charts
2014-08-26	Sunder	Quantification of the effect of geographic versus environmental isolation on genetic differentiation
2014-08-26	swirl	Learn R, in R
2014-08-26	testthatsomemore	A mocking, stubbing, and file testing framework extending testthat
2014-08-26	tsDyn	Nonlinear time series models with regime switching
2014-08-26	visreg	Visualization of regression models
2014-08-25	commandr	Command pattern in R
2014-08-25	CommonJavaJars	Useful libraries for building a Java based GUI under R
2014-08-25	exact2x2	Exact Conditional Tests and Confidence Intervals for 2x2 tables
2014-08-25	formatR	Format R Code Automatically
2014-08-25	granova	Graphical Analysis of Variance
2014-08-25	hapassoc	Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm
2014-08-25	MultNonParam	Multivariate Nonparametric Methods
2014-08-25	mutossGUI	A graphical user interface for the MuToss Project
2014-08-25	nanop	Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
2014-08-25	ncdf	Interface to Unidata netCDF data files
2014-08-25	nopp	Nash Optimal Party Positions
2014-08-25	Rd2roxygen	Convert Rd to roxygen documentation and utilities to improve documentation
2014-08-25	remote	Empirical Orthogonal Teleconnections in R
2014-08-25	sde	Simulation and Inference for Stochastic Differential Equations
2014-08-25	shotGroups	Analyze shot group data
2014-08-24	CosmoPhotoz	Photometric redshift estimation using generalized linear models
2014-08-24	EMP	Expected Maximum Profit for Credit Scoring
2014-08-24	HLSM	Hierarchical latent space network model (HLSM)
2014-08-24	hypervolume	High-dimensional kernel density estimation and geometry operations
2014-08-24	markdown	Markdown rendering for R
2014-08-24	mkde	2D and 3D movement-based kernel density estimates (MKDEs)
2014-08-24	RsimMosaic	R Simple IMage Mosaic creation library
2014-08-24	sandwich	Robust Covariance Matrix Estimators
2014-08-24	schoRsch	Tools for analyzing factorial experiments
2014-08-24	sonicLength	Estimating Abundance of Clones from DNA fragmentation data
2014-08-23	AMOEBA	A Multidirectional Optimum Ecotope-Based Algorithm
2014-08-23	bigRR	Generalized Ridge Regression (with special advantage for p >> n cases)
2014-08-23	ChainLadder	Statistical methods and models for the calculation of outstanding claims reserves in general insurance
2014-08-23	CompRandFld	Composite-likelihood based Analysis of Random Fields
2014-08-23	gamclass	Functions and data for a course on modern regression and classification
2014-08-23	labeling	Axis Labeling
2014-08-23	mosaic	Project MOSAIC (mosaic-web.org) statistics and mathematics teaching utilities
2014-08-23	mosaicData	Project MOSAIC (mosaic-web.org) data sets
2014-08-23	mppa	Statistics for analysing multiple simultaneous point processes on the real line
2014-08-23	NHANES	NHANES data
2014-08-23	NLP	Natural Language Processing Infrastructure
2014-08-23	pauwels2014	Bayesian Experimental Design for Systems Biology
2014-08-23	season	Seasonal analysis of health data
2014-08-23	spacetime	classes and methods for spatio-temporal data
2014-08-23	survAccuracyMeasures	Estimate accuracy measures for risk prediction markers from survival data
2014-08-22	bdsmatrix	Routines for Block Diagonal Symmetric matrices
2014-08-22	PResiduals	Probability scale residuals and residual correlations
2014-08-22	qualityTools	Statistical Methods for Quality Science
2014-08-22	rlist	A set of tools for working with list objects
2014-08-22	scaRabee	Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models
2014-08-22	scholar	Analyse citation data from Google Scholar
2014-08-22	spdynmod	Spatio-dynamic wetland plant communities model
2014-08-22	visova	Visualization of Analysis of Variance(VISOVA)
2014-08-22	wpp2012	World Population Prospects 2012
2014-08-22	wppExplorer	Explorer of World Population Prospects
2014-08-22	xlsxjars	Package required POI jars for the xlsx package
2014-08-21	boilerpipeR	Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
2014-08-21	childsds	Calculation of standard deviation scores adduced from different growth standards
2014-08-21	codetools	Code Analysis Tools for R
2014-08-21	EpiDynamics	Dynamic Models in Epidemiology
2014-08-21	mvnfast	Fast multivariate normal methods
2014-08-21	nat	nat: NeuroAnatomy Toolbox for Analysis of 3D Image Data
2014-08-21	pegas	Population and Evolutionary Genetics Analysis System
2014-08-21	RcppEigen	Rcpp integration for the Eigen templated linear algebra library
2014-08-21	sensory	Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization (PEM) algorithm
2014-08-21	SocialNetworks	Generates social networks based on distance
2014-08-21	SparseTSCGM	Sparse time series chain graphical models
2014-08-21	TableToLongForm	TableToLongForm
2014-08-20	bold	Interface to Bold Systems API
2014-08-20	CCTpack	Cultural Consensus Theory applications to data
2014-08-20	GLSME	Generalized Least Squares with Measurement Error
2014-08-20	hydrostats	Hydrologic indices for daily time series data
2014-08-20	matpow	matrix powers
2014-08-20	mokken	Mokken Scale Analysis in R
2014-08-20	RcppMLPACK	Rcpp integration for MLPACK library
2014-08-20	reldist	Relative Distribution Methods
2014-08-20	robumeta	Robust variance meta-regression
2014-08-20	rsunlight	Interface to Sunlight Foundation APIs
2014-08-19	arules	Mining Association Rules and Frequent Itemsets
2014-08-19	DStree	Recursive Partitioning for Discrete-Time Survival Trees
2014-08-19	extlasso	Maximum penalized likelihood estimation with extended lasso penalty
2014-08-19	FD	Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
2014-08-19	HSAUR	A Handbook of Statistical Analyses Using R
2014-08-19	HSAUR2	A Handbook of Statistical Analyses Using R (2nd Edition)
2014-08-19	HSAUR3	A Handbook of Statistical Analyses Using R (3rd Edition)
2014-08-19	laeken	Estimation of indicators on social exclusion and poverty
2014-08-19	mRMRe	R package for parallelized mRMR ensemble feature selection
2014-08-19	RcmdrPlugin.EcoVirtual	Rcmdr EcoVirtual Plugin
2014-08-19	rite	The Right Editor to Write R
2014-08-19	spartan	Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
2014-08-19	teigen	Model-based clustering and classification with the multivariate t-distribution
2014-08-19	TukeyC	Conventional Tukey Test
2014-08-18	BayesX	R Utilities Accompanying the Software Package BayesX
2014-08-18	bigmemory.sri	A shared resource interface for Bigmemory Project packages
2014-08-18	gap	Genetic analysis package
2014-08-18	geigen	Calculate generalized eigenvalues of a matrix pair
2014-08-18	grplasso	Fitting user specified models with Group Lasso penalty
2014-08-18	kedd	Kernel Estimator and Bandwidth Selection for Density and its Derivatives
2014-08-18	list	Statistical Methods for the Item Count Technique and List Experiment
2014-08-18	lmmot	Multiple Ordinal Tobit (MOT) model
2014-08-18	mvrtn	Mean and Variance of Truncated Normal Distribution
2014-08-18	PhyActBedRest	Marks periods of sleep in Actigraph accelerometer data
2014-08-18	recommenderlab	Lab for Developing and Testing Recommender Algorithms
2014-08-18	rfordummies	Code examples to accompany the book "R for Dummies"
2014-08-18	robCompositions	Robust Estimation for Compositional Data
2014-08-18	synthpop	Generating synthetic versions of sensitive microdata for statistical disclosure control
2014-08-18	wildlifeDI	Calculate Indices of Dynamic Interaction for Wildlife Telemetry Data
2014-08-17	classify	Classification Accuracy and Consistency under IRT models
2014-08-17	complmrob	Robust linear regression with compositional data as covariates
2014-08-17	gglasso	Group Lasso Penalized Learning Using A Unified BMD Algorithm
2014-08-17	LPmerge	Merging linkage maps by linear programming
2014-08-17	PTAk	Principal Tensor Analysis on k modes
2014-08-17	W3CMarkupValidator	R Interface to W3C Markup Validation Services
2014-08-17	WikipediR	A MediaWiki API wrapper
2014-08-16	EcoVirtual	Simulation of Ecological Models
2014-08-16	ELT	ELT - A package to build Experience Life Tables
2014-08-16	planar	Multilayer optics
2014-08-16	RECA	Relevant Component Analysis for Supervised Distance Metric Learning
2014-08-16	RGoogleAnalytics	R Wrapper for the Google Analytics API
2014-08-16	RootsExtremaInflections	Finds roots, extrema and inflection points of a curve
2014-08-16	snpar	Supplementary Non-parametric Statistics Methods
2014-08-16	tbart	Teitz and Bart p-median algorithm
2014-08-15	BBEST	Bayesian Estimation of Incoherent Neutron scattering Backgrounds
2014-08-15	COUNT	Functions, data and code for count data
2014-08-15	CVTuningCov	Regularized Estimators of Covariance Matrices with CV Tuning
2014-08-15	gCat	Graph-based two-sample tests for categorical data
2014-08-15	phtt	Panel Data Analysis with Heterogeneous Time Trends
2014-08-15	pycno	Pycnophylactic Interpolation
2014-08-15	rowr	Row-based functions for R objects
2014-08-15	rprintf	Adaptive builder for formatted strings
2014-08-15	Rttf2pt1	Package for ttf2pt1 program
2014-08-15	rtype	A strong type system for R
2014-08-15	semPlot	Path diagrams and visual analysis of various SEM packages' output
2014-08-15	survey	analysis of complex survey samples
2014-08-15	Vdgraph	This package creates variance dispersion graphs and fraction of design space plots for response surface designs
2014-08-14	AntWeb	programmatic interface to the AntWeb
2014-08-14	bamboo	Protein Secondary Structure Prediction Using the Bamboo Method
2014-08-14	CBPS	R Package for Covariate Balancing Propensity Score
2014-08-14	effects	Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds Logit Models and Mixed-Effects Models
2014-08-14	fastGHQuad	Fast Rcpp implementation of Gauss-Hermite quadrature
2014-08-14	hmmm	hierarchical multinomial marginal models
2014-08-14	OceanView	Visualisation of Oceanographic Data and Model Output
2014-08-14	RFLPtools	Tools to analyse RFLP data
2014-08-14	trimTrees	Trimmed opinion pools of trees in a random forest
2014-08-14	XLConnect	Excel Connector for R
2014-08-14	XLConnectJars	JAR dependencies for the XLConnect package
2014-08-13	BlandAltmanLeh	Plots (slightly extended) Bland-Altman plots
2014-08-13	dicionariosIBGE	Dictionaries for reading microdata surveys from IBGE
2014-08-13	dynsim	An R implementation of dynamic simulations of autoregressive relationships
2014-08-13	growthrate	Bayesian reconstruction of growth velocity
2014-08-13	HAC	Estimation, simulation and visualization of Hierarchical Archimedean Copulae (HAC)
2014-08-13	LEAPFrOG	Likelihood Estimation of Admixture in Parents From Offspring Genotypes
2014-08-13	linkcomm	Tools for Generating, Visualizing, and Analysing Link Communities in Networks
2014-08-13	optmatch	Functions for optimal matching
2014-08-13	ReporteRsjars	External jars required for package ReporteRs
2014-08-13	rockchalk	Regression Estimation and Presentation
2014-08-13	tvd	Total Variation Denoising
2014-08-12	astrodatR	Astronomical Data
2014-08-12	cAIC4	Conditional Akaike information criterion for lme4
2014-08-12	cramer	Multivariate nonparametric Cramer-Test for the two-sample-problem
2014-08-12	ergm.graphlets	ergm.graphlets: A Package for ERG Modeling Based on Graphlet Properties
2014-08-12	lfstat	Calculation of Low Flow Statistics for daily stream flow data
2014-08-12	LindenmayeR	Functions to Explore L-Systems (Lindenmayer Systems)
2014-08-12	msarc	Draws diagrams (mis)representing the results of mass spec experiments
2014-08-12	MuMIn	Multi-model inference
2014-08-12	psych	Procedures for Psychological, Psychometric, and Personality Research
2014-08-12	R4CouchDB	A R convenience layer for CouchDB
2014-08-12	random.polychor.pa	A Parallel Analysis With Polychoric Correlation Matrices
2014-08-12	rfPermute	Estimate Permutation p-values for Random Forest Importance Metrics
2014-08-12	RLRsim	Exact (Restricted) Likelihood Ratio tests for mixed and additive models
2014-08-12	swfscMisc	Miscellaneous Functions for Southwest Fisheries Science Center
2014-08-12	twostageTE	Two-Stage Threshold Estimation
2014-08-12	Xmisc	Xiaobei's miscellaneous classes and functions
2014-08-11	apt	Asymmetric Price Transmission (apt)
2014-08-11	crs	Categorical Regression Splines
2014-08-11	erer	Empirical Research in Economics with R
2014-08-11	GrammR	Graphical Representation and Modeling of Metagenomic Reads
2014-08-11	HardyWeinberg	Graphical tests for Hardy-Weinberg equilibrium
2014-08-11	hdi	High-Dimensional Inference
2014-08-11	ibeemd	Irregular-lattice based ensemble empirical mode decomposition
2014-08-11	LakeMetabolizer	Tools for the analysis of ecosystem metabolism
2014-08-11	lgtdl	A set of methods for longitudinal data objects
2014-08-11	MALDIquant	Quantitative Analysis of Mass Spectrometry Data
2014-08-11	MALDIquantForeign	Import/Export routines for MALDIquant
2014-08-11	MicroDatosEs	Utilities for Official Spanish Microdata
2014-08-11	OutbreakTools	basic tools for the analysis of disease outbreaks
2014-08-11	summarytools	Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output
2014-08-11	threeboost	Thresholded variable selection and prediction based on estimating equations
2014-08-11	tigerstats	R for Elementary Statistics
2014-08-11	vartors	Transform Definition of Variables to R Scripts
2014-08-11	wfe	Weighted Linear Fixed Effects Regression Models for Causal Inference
2014-08-10	alleHap	Allele simulation and Haplotype reconstruction from pedigree databases
2014-08-10	hglasso	Learning graphical models with hubs
2014-08-10	RWebLogo	plotting custom sequence logos
2014-08-10	tiger	TIme series of Grouped ERrors
2014-08-10	UScancer	Create US cancer datasets from SEER, IARC, and US Census data
2014-08-10	vrtest	Variance Ratio tests and other tests for Martingale Difference Hypothesis
2014-08-09	astrolibR	Astronomy Users Library
2014-08-09	bayesSurv	Bayesian Survival Regression with Flexible Error and Random Effects Distributions
2014-08-09	binseqtest	Exact Binary Sequential Designs and Analysis
2014-08-09	CHAT	Clonal Heterogeneity Analysis Tool
2014-08-09	dglars	Differential Geometric LARS (dgLARS) method
2014-08-09	distr	Object oriented implementation of distributions
2014-08-09	ecipex	Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
2014-08-09	growfunctions	Bayesian non-parametric dependent models for time-indexed functional data
2014-08-09	hexbin	Hexagonal Binning Routines
2014-08-09	muhaz	Hazard Function Estimation in Survival Analysis
2014-08-09	mvmeta	Multivariate and Univariate Meta-Analysis and Meta-Regression
2014-08-09	NScluster	Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models
2014-08-09	SnowballC	Snowball stemmers based on the C libstemmer UTF-8 library
2014-08-09	SNSequate	Standard and Nonstandard Statistical Models and Methods for Test Equating
2014-08-09	sybilcycleFreeFlux	cycle-Free Flux balance analysis: Efficient removal of thermodynamically infeasible cycles from metabolic flux distributions
2014-08-08	itertools2	itertools2: Functions creating iterators for efficient looping
2014-08-08	LDRTools	Tools for Linear Dimension Reduction
2014-08-08	portes	Portmanteau Tests for Univariate and Multivariate Time Series Models
2014-08-08	rgp	R genetic programming framework
2014-08-08	RTriangle	Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
2014-08-08	SpatialPack	Package for analysis of spatial data
2014-08-08	treeclim	Numerical calibration of proxy-climate relationships
2014-08-08	wbs	Wild Binary Segmentation for multiple change-point detection
2014-08-07	RGENERATE	RGENERATE A tool for generation random variable time series using the tools of 'vars' or 'RMAWGEN'
2014-08-06	BioMark	Find biomarkers in two-class discrimination problems
2014-08-06	colourlovers	R client for the COLOURlovers API
2014-08-06	epiR	An R package for the analysis of epidemiological data
2014-08-06	federalregister	Client package for the U.S. Federal Register API
2014-08-06	GeneticTools	Collection of Genetic Data Analysis Tools
2014-08-06	gMWT	Generalized Mann-Whitney Type Tests
2014-08-06	heatmapFit	Fit statistic for binary dependent variable models
2014-08-06	klaR	Classification and visualization
2014-08-06	osDesign	Design and analysis of observational studies
2014-08-06	rags2ridges	Ridge Estimation of Precision Matrices from High-Dimensional Data
2014-08-06	rje	Miscellaneous useful functions
2014-08-06	RNeXML	Implement semantically rich I/O for NeXML format
2014-08-05	dave	Functions for "Data Analysis in Vegetation Ecology"
2014-08-05	dendroextras	Extra functions to cut, label and colour dendrogram clusters
2014-08-05	dlnm	Distributed Lag Non-linear Models
2014-08-05	EMMIXuskew	Fitting Unrestricted Multivariate Skew t Mixture Models
2014-08-05	expp	Spatial analysis of extra-pair paternity
2014-08-05	hitandrun	"Hit and Run" method for sampling uniformly from convex shapes
2014-08-05	hmm.discnp	Hidden Markov models with discrete non-parametric observation distributions
2014-08-05	MXM	Discovering multiple, statistically-equivalent signatures
2014-08-05	rfigshare	an R interface to figshare.com
2014-08-05	SDMTools	Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises
2014-08-04	BHMSMAfMRI	Bayesian hierarchical multi-subject multiscale analysis of functional MRI data
2014-08-04	breakaway	Species richness estimation and modelling
2014-08-04	ChemometricsWithR	Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
2014-08-04	decctools	Get energy data from the UK Dept of Energy and Climate Change
2014-08-04	EIAdata	R Wrapper for the Energy Information Administration (EIA) API
2014-08-04	kohonen	Supervised and unsupervised self-organising maps
2014-08-04	MixedTS	Mixed Tempered Stable Distribution
2014-08-04	nloptr	R interface to NLopt
2014-08-04	phonTools	Functions for phonetics in R
2014-08-04	pomp	Statistical inference for partially observed Markov processes
2014-08-04	RKEA	R/KEA interface
2014-08-04	RWekajars	R/Weka interface jars
2014-08-04	squash	Color-based plots for multivariate visualization
2014-08-04	symmoments	Symbolic central and noncentral moments of the multivariate normal distribution
2014-08-03	deldir	Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
2014-08-03	interAdapt	interAdapt
2014-08-03	mmod	Modern measures of population differentiation
2014-08-03	PottsUtils	Utility Functions of the Potts Models
2014-08-03	rPython	Package allowing R to call Python
2014-08-03	sanitizers	C/C++ source code to trigger Address and Undefined Behaviour Sanitizers
2014-08-03	sem	Structural Equation Models
2014-08-03	statfi	statfi R tools
2014-08-03	vcd	Visualizing Categorical Data
2014-08-02	CerioliOutlierDetection	Outlier detection using the iterated RMCD method of Cerioli (2010)
2014-08-02	gettingtothebottom	Getting to the Bottom, A Package for Learning Optimization Methods
2014-08-02	MGRASTer	API Client for the MG-RAST Server of the US DOE KBase
2014-08-02	topologyGSA	Gene Set Analysis Exploiting Pathway Topology
2014-08-02	xlsx	Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files
2014-08-01	coenocliner	Coenocline simulation
2014-08-01	emil	Evaluation of Modeling without Information Leakage
2014-08-01	Familias	Probabilities for Pedigrees given DNA data
2014-08-01	fanplot	Visualisation of sequential probability distributions using fan charts
2014-08-01	ic.infer	Inequality constrained inference in linear normal situations
2014-08-01	LinearizedSVR	Linearized Support Vector Regression
2014-08-01	LPStimeSeries	Learned Pattern Similarity and Representation for Time Series
2014-08-01	optiscale	Optimal scaling
2014-08-01	qdapDictionaries	Dictionaries and word lists for the qdap package
2014-08-01	SIS	Sure Independence Screening
2014-08-01	subgroup	Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials
2014-07-31	agsemisc	Miscellaneous plotting and utility functions
2014-07-31	aoristic	aoristic analysis with spatial output (kml)
2014-07-31	bayou	Bayesian fitting of Ornstein-Uhlenbeck models to phylogenies
2014-07-31	ctv	CRAN Task Views
2014-07-31	FrF2	Fractional Factorial designs with 2-level factors
2014-07-31	GeoDE	A geometrical Approach to Differential expression and gene-set enrichment
2014-07-31	GNE	Computation of generalized Nash equilibria
2014-07-31	plotKML	Visualization of spatial and spatio-temporal objects in Google Earth
2014-07-31	RefFreeEWAS	EWAS using reference-Free DNA methylation mixture deconvolution
2014-07-31	SAPP	Statistical Analysis of Point Processes
2014-07-31	spnet	Plotting (social) networks on maps
2014-07-31	timsac	TIMe Series Analysis and Control package
2014-07-31	wskm	Weighted k-means Clustering
2014-07-30	arulesNBMiner	Mining NB-Frequent Itemsets and NB-Precise Rules
2014-07-30	btf	Estimates univariate function via Bayesian trend filtering
2014-07-30	codep	Multiscale Codependence Analysis
2014-07-30	CRF	CRF - Conditional Random Fields
2014-07-30	ExceedanceTools	Confidence regions for exceedance sets and contour lines
2014-07-30	mwa	MWA package for causal inference in spatiotemporal event data
2014-07-30	rareGE	Testing Gene-Environment Interaction for Rare Genetic Variants
2014-07-30	RbioRXN	RbioRXN - process Rhea, KEGG, MetaCyc, Unipathway biochemical reaction data
2014-07-30	tmap	Thematic Maps
2014-07-29	hasseDiagram	Drawing Hasse diagram
2014-07-29	lctools	Local Correlation, Spatial Inequalities and other tools
2014-07-29	NeatMap	Non-clustered heatmap alternatives
2014-07-29	netmeta	Network meta-analysis with R
2014-07-29	pheno2geno	Pheno2Geno - Generating genetic markers and maps from molecular phenotypes
2014-07-29	phreeqc	R interface to the phreeqc geochemical modeling program
2014-07-29	poppr	an R package for genetic analysis of populations with mixed reproduction
2014-07-29	psychomix	Psychometric Mixture Models
2014-07-29	RCurl	General network (HTTP/FTP/...) client interface for R
2014-07-29	RODBCext	Parameterized queries extension for RODBC
2014-07-29	rorutadis	Robust Ordinal Regression UTADIS
2014-07-29	stocc	Fit a spatial occupancy model via Gibbs sampling
2014-07-28	cosinor	Tools for estimating and predicting the cosinor model
2014-07-28	cplexAPI	R Interface to C API of IBM ILOG CPLEX
2014-07-28	cvxclustr	Splitting methods for convex clustering
2014-07-28	discreteRV	Functions to create and manipulate discrete random variables
2014-07-28	drfit	Dose-response data evaluation
2014-07-28	Gmisc	Collection of functions for plotting relations, generating tables, and more
2014-07-28	gmp	Multiple Precision Arithmetic
2014-07-28	LowRankQP	Low Rank Quadratic Programming
2014-07-28	ltbayes	Simulation-Based Bayesian Inference for Latent Traits of Item Response Models
2014-07-28	peptider	Evaluation of diversity in nucleotide libraries
2014-07-28	pryr	Tools for computing on the language
2014-07-28	RJSONIO	Serialize R objects to JSON, JavaScript Object Notation
2014-07-28	rYoutheria	Access to the YouTheria mammal trait database
2014-07-27	GrapheR	A multi-platform GUI for drawing customizable graphs in R
2014-07-27	KFKSDS	Kalman Filter, Smoother and Disturbance Smoother
2014-07-27	migest	Useful R code for the Estimation of Migration
2014-07-27	stsm	Structural Time Series Models
2014-07-26	dcmr	Attribute profile estimation using Diagnostic Classification Models and MCMC
2014-07-26	DiscML	DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
2014-07-26	influence.SEM	Case Influence in Structural Equation Models
2014-07-26	infotheo	Information-Theoretic Measures
2014-07-26	lpSolve	Interface to Lp_solve v. 5.5 to solve linear/integer programs
2014-07-26	OUwie	Analysis of evolutionary rates in an OU framework
2014-07-26	stsm.class	Class and Methods for Structural Time Series Models
2014-07-25	animation	A gallery of animations in statistics and utilities to create animations
2014-07-25	AppliedPredictiveModeling	Functions and Data Sets for 'Applied Predictive Modeling'
2014-07-25	inTrees	Interpret Tree Ensembles
2014-07-25	MSBVAR	Markov-Switching, Bayesian, Vector Autoregression Models
2014-07-25	nicheROVER	(Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches
2014-07-25	phylin	Spatial interpolation of genetic data
2014-07-25	quantregGrowth	Growth charts via regression quantiles
2014-07-25	Rankcluster	Model-based clustering for multivariate partial ranking data
2014-07-25	rngWELL	toolbox for WELL random number generators
2014-07-25	TreeSimGM	Simulating Phylogenetic Trees under a General Model
2014-07-24	imguR	Imgur API Client Package for R
2014-07-24	ManyTests	Multiple testing procedures of Cox (2011) and Wang and Cox (2007)
2014-07-24	mtk	Mexico ToolKit library (MTK)
2014-07-24	pocrm	Dose-finding in drug combination Phase I trials using the partial order continual reassessment method (PO-CRM)
2014-07-24	randtoolbox	toolbox for pseudo and quasi random number generation and RNG tests
2014-07-24	RItools	Randomization inference tools
2014-07-24	rvalues	Computation of r-values for ranking in high-dimensional settings
2014-07-24	sensitivitymw	Sensitivity analysis using weighted M-statistics
2014-07-24	spuRs	Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"
2014-07-24	ssh.utils	Local and remote system commands with output and error capture
2014-07-24	tables	Formula-driven table generation
2014-07-23	acp	Autoregressive Conditional Poisson
2014-07-23	CAvariants	Correspondence Analysis Variants
2014-07-23	ecospat	Spatial ecology miscellaneous methods
2014-07-23	Epi	A package for statistical analysis in epidemiology
2014-07-23	hglm.data	Data for The hglm Package
2014-07-23	hts	Hierarchical and grouped time series
2014-07-23	IBDhaploRtools	Functions for the Analysis of IBD Haplo output
2014-07-23	mada	Meta-Analysis of Diagnostic Accuracy (mada)
2014-07-23	miscFuncs	Miscellaneous Useful Functions
2014-07-23	ReorderCluster	Reordering the dendrogram according to the class labels
2014-07-23	rnaseqWrapper	Wrapper for several R packages and scripts to automate RNA-seq analysis
2014-07-23	survsim	Simulation of simple and complex survival data
2014-07-22	AdaptFitOS	Adaptive Semiparametric Regression with Simultaneous Confidence Bands
2014-07-22	babynames	US baby names 1880-2013
2014-07-22	clinfun	Clinical Trial Design and Data Analysis Functions
2014-07-22	fueleconomy	EPA fuel economy data
2014-07-22	glasso	Graphical lasso- estimation of Gaussian graphical models
2014-07-22	kinship2	Pedigree functions
2014-07-22	leapp	latent effect adjustment after primary projection
2014-07-22	MDPtoolbox	Markov Decision Processes toolbox
2014-07-22	mewAvg	A Fixed Memeory Moving Expanding Window Average
2014-07-22	nasaweather	Collection of datasets from the ASA 2006 data expo
2014-07-22	nontargetData	Quantized simulation data of isotope pattern centroids
2014-07-22	nycflights13	Data about flights departing NYC in 2013
2014-07-22	RMRAINGEN	RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values
2014-07-22	rnbn	Access NBN data
2014-07-22	rplos	Interface to PLoS Journals search API
2014-07-22	SPACECAP	A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models
2014-07-22	splusTimeDate	Times and Dates from S-PLUS
2014-07-21	BayesBridge	Bridge Regression
2014-07-21	BayesLogit	Logistic Regression
2014-07-21	bootSVD	Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
2014-07-21	class	Functions for Classification
2014-07-21	densityClust	Clustering by fast search and find of density peaks
2014-07-21	gamm4	Generalized additive mixed models using mgcv and lme4
2014-07-21	GeoGenetix	Quantification of the effect of geographic versus environmental isolation on genetic differentiation
2014-07-21	gss	General Smoothing Splines
2014-07-21	HSSVD	Biclustering with heterogeneous variance
2014-07-21	icd9	Tools for Working with ICD-9 Codes, and Finding Comorbidities
2014-07-21	ineq	Measuring Inequality, Concentration, and Poverty
2014-07-21	msme	Functions and Datasets for "Methods of Statistical Model Estimation"
2014-07-21	RANN	Fast Nearest Neighbour Search (wraps Arya and Mount's ANN library)
2014-07-21	rnoaa	NOAA climate data from R
2014-07-21	SASxport	Read and Write SAS XPORT Files
2014-07-21	SuperLearner	Super Learner Prediction
2014-07-21	TableMonster	Table Monster
2014-07-21	tidyr	Easily tidy data with spread and gather functions
2014-07-20	astrochron	An R Package for Astrochronology
2014-07-20	coxinterval	Cox-type models for interval-censored data
2014-07-20	ecp	Nonparametric Multiple Change Point Analysis of Multivariate Data
2014-07-20	ExomeDepth	Calls CNV from exome sequence data
2014-07-20	gWidgetstcltk	Toolkit implementation of gWidgets for tcltk package
2014-07-20	ProgGUIinR	support package for "Programming Graphical User Interfaces in R"
2014-07-20	SBRect	Detecting structural breaks using rectangle covering (non-parametric method)
2014-07-19	ergm	Fit, Simulate and Diagnose Exponential-Family Models for Networks
2014-07-19	lme4	Linear mixed-effects models using Eigen and S4
2014-07-19	pcnetmeta	Methods for patient-centered network meta-analysis
2014-07-19	permGPU	permPGU: Using GPUs in Statistical Genomics
2014-07-19	plsRcox	Partial least squares Regression for Cox models and related techniques
2014-07-19	plsRglm	Partial least squares Regression for generalized linear models
2014-07-19	RGtk2	R bindings for Gtk 2.8.0 and above
2014-07-19	slp	Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers
2014-07-19	TEQR	Target Equivalence Range Design
2014-07-18	bezier	Bezier Curve and Spline Toolkit
2014-07-18	cherry	Multiple testing methods for exploratory research
2014-07-18	colorscience	Color Science methods and data
2014-07-18	fuzzyMM	Map Matching Using Fuzzy Logic
2014-07-18	mem	Moving Epidemic Method R Package
2014-07-18	sdcMicro	Statistical Disclosure Control methods for anonymization of microdata and risk estimation
2014-07-18	siRSM	Single-Index Response Surface Models
2014-07-18	SMNCensReg	Fitting univariate censored regression model under the scale mixture of normal distributions
2014-07-17	crrstep	Stepwise covariate selection for the Fine & Gray competing risks regression model
2014-07-17	flora	tools for interacting with the Brazilian Flora Checklist
2014-07-17	mvcwt	Wavelet analysis of multiple time series
2014-07-17	nscancor	Non-Negative and Sparse CCA
2014-07-17	nsprcomp	Non-Negative and Sparse PCA
2014-07-17	randomForest	Breiman and Cutler's random forests for classification and regression
2014-07-17	RTDE	Robust Tail Dependence Estimation
2014-07-16	functional	Curry, Compose, and other higher-order functions
2014-07-16	GCAI.bias	Guided Correction Approach for Inherited bias (GCAI.bias)
2014-07-16	hillmakeR	Perform occupancy analysis
2014-07-16	hpcwld	High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
2014-07-16	NAPPA	Performs the processing and normalisation of Nanostring miRNA and mRNA data
2014-07-16	ORCME	Order Restricted Clustering for Microarray Experiments
2014-07-16	PCovR	Principal Covariates Regression
2014-07-16	phaseR	Phase Plane Analysis of One and Two Dimensional Autonomous ODE Systems
2014-07-16	questionr	Functions to make surveys processing easier
2014-07-16	SigTree	Identify and visualize significantly responsive branches in a phylogenetic tree
2014-07-16	translate	Bindings for the Google Translate API v2
2014-07-16	TSP	Traveling Salesperson Problem (TSP)
2014-07-15	ape	Analyses of Phylogenetics and Evolution
2014-07-15	archdata	Example Datasets from Archaeological Research
2014-07-15	clickstream	Analyzes clickstreams based on Markov chains
2014-07-15	countrycode	Convert country names and country codes
2014-07-15	DFIT	Differential Functioning of Items and Tests (DFIT) framework analyses
2014-07-15	ParallelForest	Random Forest Classification with Parallel Computing
2014-07-15	quad	Exact permutation moments of quadratic form statistics
2014-07-15	ROSE	ROSE: Random Over-Sampling Examples
2014-07-15	synchrony	Methods for computing spatial, temporal, and spatiotemporal statistics
2014-07-15	TSdist	Distance Measures for Time Series data
2014-07-14	cg	The cg package to compare groups
2014-07-14	enviPat	Isotope pattern, profile and centroid calculation for mass spectrometry
2014-07-14	FatTailsR	Power Hyperbolic Functions and Kiener Distributions
2014-07-14	IDPSurvival	Imprecise Dirichlet Process for Survival Analysis
2014-07-14	regress	Gaussian linear models with linear covariance structure
2014-07-14	SparseM	Sparse Linear Algebra
2014-07-14	stream	Infrastructure for Data Stream Mining
2014-07-13	d3Network	Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
2014-07-13	Formula	Extended Model Formulas
2014-07-13	imputeLCMD	A collection of methods for left-censored missing data imputation
2014-07-13	pgmm	Parsimonious Gaussian mixture models
2014-07-13	QoLR	Analysis of Health-Related Quality of Life in oncology
2014-07-13	YuGene	YuGene: A simple approach to scale gene expression data derived from different platforms for integrated analyses
2014-07-12	IAT	Functions to use with data from the Implicit Association Test
2014-07-12	mixture	Mixture Models for Clustering and Classification
2014-07-12	ncvreg	Regularization paths for SCAD- and MCP-penalized regression models
2014-07-12	r4ss	R code for Stock Synthesis
2014-07-11	abc	Tools for Approximate Bayesian Computation (ABC)
2014-07-11	popKorn	For interval estimation of mean of selected populations
2014-07-11	refund.wave	Wavelet-Domain Regression with Functional Data
2014-07-11	robustlmm	Robust Linear Mixed Effects Models
2014-07-11	tth	TeX to HTML/MathML Translators tth/ttm
2014-07-11	yaImpute	yaImpute: An R Package for k-NN Imputation
2014-07-10	BAMMtools	Analysis and visualization of macroevolutionary dynamics on phylogenetic trees
2014-07-10	CondReg	Condition Number Regularized Covariance Estimation
2014-07-10	COSINE	COndition SpecIfic sub-NEtwork
2014-07-10	irace	Iterated Racing Procedures
2014-07-10	likeLTD	Tools to determine DNA profile evidence
2014-07-10	metafolio	Metapopulation simulations for conserving salmon through portfolio optimization
2014-07-10	mvglmmRank	Multivariate Generalized Linear Mixed Models for Ranking Sports Teams
2014-07-10	planor	Generation of regular factorial designs
2014-07-10	pRSR	Test of periodicity using response surface regression
2014-07-10	robustvarComp	Robust Estimation of Variance Component Models
2014-07-10	rysgran	Grain size analysis, textural classifications and distribution of unconsolidated sediments
2014-07-10	StatMethRank	Statistical Methods for Ranking Data
2014-07-10	surv2sampleComp	Inference for model-free between-group parameters for censored survival data
2014-07-09	CNOGpro	Copy Numbers of Genes in prokaryotes
2014-07-09	crossReg	Confidence intervals for crossover points of two simple regression lines
2014-07-09	DTR	Estimation and comparison of dynamic treatment regimes
2014-07-09	INLABMA	Bayesian Model Averaging with INLA
2014-07-09	network	Classes for Relational Data
2014-07-09	translateR	Bindings for the Google and Microsoft Translation APIs
2014-07-09	verification	Weather Forecast Verification Utilities
2014-07-09	VideoComparison	Video comparison tool
2014-07-08	EvoRAG	Evolutionary Rates Across Gradients
2014-07-08	libamtrack	Computational routines for proton and ion radiotherapy
2014-07-08	msm	Multi-state Markov and hidden Markov models in continuous time
2014-07-08	npcp	Some nonparametric tests for change-point detection in (multivariate) observations
2014-07-08	RcmdrPlugin.ROC	Rcmdr Receiver Operator Characteristic Plug-In package
2014-07-08	RmixmodCombi	Combining Mixture Components for Clustering
2014-07-08	sievetest	Sieve test reporting functions
2014-07-08	sms	Spatial Microsimulation
2014-07-07	biomod2	Ensemble platform for species distribution modeling
2014-07-07	clusterSim	Searching for optimal clustering procedure for a data set
2014-07-07	CoClust	Copula based cluster analysis
2014-07-07	MCAvariants	Multiple Correspondence Analysis Variants
2014-07-07	muscle	Multiple Sequence Alignment
2014-07-07	plotSEMM	Graphing nonlinear latent variable interactions in SEMM
2014-07-07	readODS	Read ODS files and puts them into data frames
2014-07-07	rLakeAnalyzer	Package for the analysis of lake physics
2014-07-06	ca	Simple, Multiple and Joint Correspondence Analysis
2014-07-06	rkvo	Read Key/Value Pair Observations
2014-07-05	eive	An algorithm for reducing errors-in-variable bias in simple linear regression
2014-07-05	ForIT	Functions from the 2nd Italian Forest Inventory (INFC)
2014-07-05	TestScorer	GUI for entering test items and obtaining raw and transformed scores
2014-07-05	Thinknum	Thinknum Data Connection
2014-07-05	tm.plugin.factiva	Import articles from Factiva using the tm text mining framework
2014-07-04	CompGLM	Conway-Maxwell-Poisson GLM and distribution functions
2014-07-04	epi2loc	Epistatic and penetrance models for two-locus genetic interactions
2014-07-04	lvm4net	Latent Variable Models for Networks
2014-07-04	rinat	Access iNaturalist data through APIs
2014-07-04	SOD	SOD for multidimensional scaling
2014-07-03	Bayesianbetareg	Bayesian Beta regression: joint mean and precision modeling
2014-07-03	binr	Cut Numeric Values Into Evenly Distributed Groups
2014-07-03	CarletonStats	Functions For Statistics Classes At Carleton College
2014-07-03	fwi.fbp	Fire Weather Index System and Fire Behaviour Prediction System Calculations
2014-07-03	mcc	Moment Corrected Correlation
2014-07-03	morse	MOdelling tools for Reproduction and Survival data in Ecotoxicology
2014-07-03	movMF	Mixtures of von Mises-Fisher Distributions
2014-07-03	parallelMap	Unified interface to some popular parallelization back-ends for interactive usage and package development
2014-07-03	qualCI	Causal Inference with Qualitative and Ordinal Information on Outcomes
2014-07-03	spfrontier	Spatial Stochastic Frontier models estimation
2014-07-03	strum	STRUctural Modeling of Latent Variables for General Pedigree
2014-07-02	agridat	Agricultural datasets
2014-07-02	FunctionalNetworks	An algorithm for gene and gene set network inference
2014-07-02	heplots	Visualizing Hypothesis Tests in Multivariate Linear Models
2014-07-02	hSDM	hierarchical Bayesian species distribution models
2014-07-02	LogConcDEAD	Log-concave Density Estimation in Arbitrary Dimensions
2014-07-02	MAVTgsa	Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest
2014-07-02	MicSim	Performing continuous-time microsimulation
2014-07-02	penMSM	Estimating regularized multistate models using L1 penalties
2014-07-02	PolyPatEx	Paternity exclusion in autopolyploid species
2014-07-02	PSAboot	Bootstrapping for Propensity Score Analysis
2014-07-02	sads	Maximum Likelihood Models for Species Abundance Distributions
2014-07-02	spatial.tools	R functions for working with spatial data
2014-07-02	SpatialTools	Tools for spatial data analysis
2014-07-02	spd	Semi Parametric Distribution
2014-07-01	csn	Closed-skew normal distribution
2014-07-01	pcalg	Methods for graphical models and causal inference
2014-07-01	PRISMA	Protocol Inspection and State Machine Analysis
2014-07-01	Rcplex	R interface to CPLEX
2014-07-01	scoring	Proper scoring rules
2014-07-01	subsemble	An Ensemble Method for Combining Subset-Specific Algorithm Fits
2014-07-01	sudoku	Sudoku Puzzle Generator and Solver
2014-06-30	CORM	The Clustering of Regression Models Method
2014-06-30	diskmemoiser	Disk Memoisation For R
2014-06-30	GenBinomApps	Clopper-Pearson Confidence Interval and Generalized Binomial Distribution
2014-06-30	groc	Generalized Regression on Orthogonal Components
2014-06-30	miRtest	combined miRNA- and mRNA-testing
2014-06-30	mnormt	The multivariate normal and t distributions
2014-06-30	rioja	Analysis of Quaternary Science Data
2014-06-30	rmgarch	Multivariate GARCH models
2014-06-30	rococo	RObust rank COrrelation COefficient and test
2014-06-30	stressr	Fetch and plot financial stress index and component data
2014-06-30	subplex	Subplex optimization algorithm
2014-06-29	BANOVA	Hierarchical Bayesian ANOVA Models
2014-06-28	np	Nonparametric kernel smoothing methods for mixed data types
2014-06-28	npRmpi	Parallel nonparametric kernel smoothing methods for mixed data types
2014-06-28	refund	Regression with Functional Data
2014-06-28	stosim	Stochastic Simulator for Reliability Modeling of Repairable Systems
2014-06-28	tsoutliers	Automatic Detection of Outliers in Time Series
2014-06-27	bsts	Bayesian structural time series
2014-06-27	cond	Approximate conditional inference for logistic and loglinear models
2014-06-27	hsphase	Phasing, sire imputation, recombination events identification and pedigree reconstruction of half-sib families using SNP data
2014-06-27	icensmis	Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes
2014-06-27	likelihood	Methods for maximum likelihood estimation
2014-06-27	rforensicbatwing	BATWING for calculating forensic trace-suspect match probabilities
2014-06-27	RSA	Response surface analysis
2014-06-27	sitar	SITAR growth curve analysis
2014-06-27	STEPCAM	ABC-SMC inference of the STEPCAM model
2014-06-26	apcluster	Affinity Propagation Clustering
2014-06-26	base64enc	Tools for base64 encoding
2014-06-26	beepr	Easily Play Notification Sounds on any Platform
2014-06-26	Cairo	R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
2014-06-26	CovSel	Model-Free Covariate Selection
2014-06-26	dgmb	dgmb Simulating data for PLS structural models
2014-06-26	ezsim	provide an easy to use framework to conduct simulation
2014-06-26	gamboostLSS	Boosting Methods for GAMLSS
2014-06-26	pedigreemm	Pedigree-based mixed-effects models
2014-06-26	RelValAnalysis	Relative Value Analysis
2014-06-26	RJDBC	Provides access to databases through the JDBC interface
2014-06-26	sp23design	Design and Simulation of seamless Phase II-III Clinical Trials
2014-06-25	abctools	Tools for ABC analyses
2014-06-25	antitrust	Antitrust Library
2014-06-25	changepoint	An R package for changepoint analysis
2014-06-25	dagbag	Learning directed acyclic graphs (DAGs) through bootstrap aggregating
2014-06-25	GB2	Generalized Beta Distribution of the Second Kind: properties, likelihood, estimation
2014-06-25	ngram	An n-gram Babbler
2014-06-25	nlsMicrobio	Nonlinear regression in predictive microbiology
2014-06-25	nlstools	Tools for nonlinear regression diagnostics
2014-06-25	PMCMR	Calculate Pairwise Multiple Comparisons of Mean Rank Sums
2014-06-25	SocialMediaMineR	A Social Media Search and Analytic Tool
2014-06-24	bingat	Binary Graph Analysis Tools
2014-06-24	BoomSpikeSlab	MCMC for spike and slab regression
2014-06-24	bst	Gradient Boosting
2014-06-24	bujar	Buckley-James Regression for Survival Data with High-Dimensional Covariates
2014-06-24	cati	Community Assembly by Traits: Individuals and beyond
2014-06-24	EasyStrata	Evaluation of stratified genome-wide association meta-analysis results
2014-06-24	fdakma	Functional Data Analysis: K-Mean Alignment
2014-06-24	FisHiCal	Iterative FISH-based Calibration of Hi-C Data
2014-06-24	ftsa	Functional time series analysis
2014-06-24	goftest	Classical Goodness-of-Fit Tests for Univariate Distributions
2014-06-24	InventorymodelPackage	Inventorymodel
2014-06-24	LS2Wstat	A Multiscale Test of Spatial Stationarity for LS2W processes
2014-06-24	matlab	MATLAB emulation package
2014-06-24	metasens	Advanced statistical methods to model and adjust for bias in meta-analysis
2014-06-24	mvpart	Multivariate partitioning
2014-06-24	optR	Optimization Toolbox for solving linear systems
2014-06-24	pedgene	Gene-level statistics for Pedigree Data
2014-06-24	revealedPrefs	Revealed preferences and microeconomic rationality
2014-06-24	RWBP	Detects spatial outliers using a Random Walk on Bipartite Graph
2014-06-24	rwt	Rice Wavelet Toolbox wrapper
2014-06-24	sampleSelection	Sample Selection Models
2014-06-24	weatherData	Get Weather Data from the Web
2014-06-23	DNAprofiles	DNA profiling evidence analysis
2014-06-23	GPvam	Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
2014-06-23	mvoutlier	Multivariate outlier detection based on robust methods
2014-06-23	rClinicalCodes	R tools for integrating with the www.clinicalcodes.org repository
2014-06-23	sdcTable	Methods for statistical disclosure control in tabular data
2014-06-23	smacof	Multidimensional Scaling in R: SMACOF
2014-06-22	bayescount	Power calculations and Bayesian analysis of count distributions and FECRT data using MCMC
2014-06-22	eegAnalysis	Tools for analysis and classification of electroencephalography (EEG) data
2014-06-22	mded	Measuring the difference between two empirical distributions
2014-06-22	MultiLCIRT	Multidimensional latent class Item Response Theory models
2014-06-22	pbdNCDF4	Programming with Big Data – Interface to Parallel Unidata NetCDF4 Format Data Files
2014-06-22	PracTools	Tools for Designing and Weighting Survey Samples
2014-06-22	support.BWS	Basic functions for supporting an implementation of best-worst scaling
2014-06-22	support.CEs	Basic functions for supporting an implementation of choice experiments
2014-06-22	TaoTeProgramming	Illustrations from Tao Te Programming
2014-06-21	aemo	Download and process AEMO price and demand data
2014-06-21	bcpmeta	Bayesian Multiple Changepoint Detection Using Metadata
2014-06-21	Boom	Bayesian Object Oriented Modeling
2014-06-21	ConnMatTools	Tools for working with connectivity matrices
2014-06-21	copulaedas	Estimation of Distribution Algorithms Based on Copulas
2014-06-21	funreg	funreg (Functional Regression for Irregularly Timed Data)
2014-06-21	markovchain	A package to handle and analyse discrete Markov chains
2014-06-21	runjags	Interface utilities, parallel computing methods and additional distributions for MCMC models in JAGS
2014-06-20	MPSEM	Modeling Phylogenetic Signals using Eigenvector Maps
2014-06-20	nadiv	Functions to construct (non)additive genetic relatedness matrices and facilitate animal model analyses
2014-06-20	parallelMCMCcombine	Methods for combining independent subset Markov chain Monte Carlo (MCMC) posterior samples to estimate a posterior density given the full data set
2014-06-20	pawacc	Physical activity with accelerometers
2014-06-19	CIDnetworks	Generative models for complex networks with conditionally independent dyadic structure
2014-06-19	CommunityCorrelogram	Ecological Community Correlogram
2014-06-19	hazus	Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
2014-06-19	plotGoogleMaps	Plot spatial or spatio-temporal data over Google Maps
2014-06-19	R2jags	A Package for Running jags from R
2014-06-19	RoughSets	Data Analysis Using Rough Set and Fuzzy Rough Set Theories
2014-06-19	StatMatch	Statistical Matching (aka data fusion)
2014-06-18	fmri	Analysis of fMRI experiments
2014-06-18	iGasso	Genetic association tests and utilities
2014-06-18	localsolver	R API to LocalSolver
2014-06-18	OmicKriging	OmicKriging for Phenotypic Prediction
2014-06-18	pse	Parameter space exploration with Latin Hypercubes
2014-06-18	rivervis	River Visualisation Tool
2014-06-17	bnlearn	Bayesian network structure learning, parameter learning and inference
2014-06-17	BradleyTerry2	Bradley-Terry Models
2014-06-17	clogitL1	Fitting exact conditional logistic regression with lasso and elastic net penalties
2014-06-17	cmprsk	Subdistribution Analysis of Competing Risks
2014-06-17	KernSmoothIRT	Nonparametric Item Response Theory
2014-06-17	marked	R Code for mark-recapture analysis
2014-06-17	pmml	Generate PMML for various models
2014-06-17	pmmlTransformations	Transforms input data from a PMML perspective
2014-06-17	spcr	Sparse principal component regression
2014-06-17	streamMOA	stream - Interface to MOA Algorithms
2014-06-17	tictoc	Functions for timing R scripts, as well as implementations of Stack and List structures
2014-06-17	TreatmentSelection	Evaluate Treatment Selection Biomarkers
2014-06-17	vdg	Variance Dispersion Graphs and Fraction of Design Space Plots
2014-06-16	arnie	"Arnie" box office records 1982-2014
2014-06-16	bizdays	Functions to handle business days calculations
2014-06-16	ipdw	ipdw: Interpolation by Inverse Path Distance Weighting
2014-06-16	nat.utils	File System Utility Functions for NeuroAnatomy Toolbox
2014-06-16	Rglpk	R/GNU Linear Programming Kit Interface
2014-06-16	RI2by2	Randomization inference for treatment effects on a binary outcome
2014-06-16	sfsmisc	Utilities from Seminar fuer Statistik ETH Zurich
2014-06-16	StratSel	Strategic Selection Estimator
2014-06-16	textometry	Textual Data Analysis Package used by the TXM Software
2014-06-15	installr	Using R to install stuff (such as: R, Rtools, RStudio, git, and more!)
2014-06-15	Matrix	Sparse and Dense Matrix Classes and Methods
2014-06-15	NLPutils	Natural Language Processing Utilities
2014-06-15	RSKC	Robust sparse K-means
2014-06-15	tm.plugin.dc	Text Mining Distributed Corpus Plug-In
2014-06-15	xhmmScripts	XHMM R scripts
2014-06-14	babel	Ribosome profiling data analysis
2014-06-14	disclapmix	Discrete Laplace mixture inference using the EM algorithm
2014-06-14	rbitcoinchartsapi	R Package for the BitCoinCharts.com API
2014-06-14	table1xls	Produces summary tables and exports them to multi-tab spreadsheet format (.xls or .xlsx)
2014-06-14	WGCNA	Weighted Correlation Network Analysis
2014-06-13	AssetPricing	Optimal pricing of assets with fixed expiry date
2014-06-13	DeducerText	Deducer GUI for Text Data
2014-06-13	ElstonStewart	Elston-Stewart Algorithm
2014-06-13	ESGtoolkit	Toolkit for the simulation of financial assets and interest rates models
2014-06-13	PCDSpline	Semiparametric regression analysis of panel count data using monotone splines
2014-06-13	pROC	display and analyze ROC curves
2014-06-13	ReliabilityTheory	Tools for structural reliability analysis
2014-06-13	s2dverification	Set of common tools for model diagnostics
2014-06-13	wordcloud	Word Clouds
2014-06-12	apsimr	Edit, run and evaluate APSIM simulations from R easily
2014-06-12	clustMD	Model based clustering for mixed data
2014-06-12	CopyDetect	Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
2014-06-12	Evapotranspiration	Evapotranspiration
2014-06-12	excursions	Functions that compute probabilistic excursion sets and contour credibility regions for latent Gaussian random processes and fields
2014-06-12	faraway	Functions and datasets for books by Julian Faraway
2014-06-12	flip	Multivariate Permutation Tests
2014-06-12	poweRlaw	Fitting heavy tailed distributions: the poweRlaw package
2014-06-12	QCA	A Package for Qualitative Comparative Analysis
2014-06-12	qVarSel	Variables Selection for Clustering and Classification
2014-06-12	RXMCDA	An XMCDA parser for R
2014-06-12	ustyc	Fetch US Treasury yield curve data
2014-06-12	yaml	Methods to convert R data to YAML and back
2014-06-11	conting	Bayesian analysis of contingency tables
2014-06-11	JMbayes	Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
2014-06-11	mice	Multivariate Imputation by Chained Equations
2014-06-11	munsellinterpol	Interpolation of Munsell renotation data to convert any hue and chroma values to CIE xyY, CIE XYZ, sRGB, CIE Lab or CIE Luv
2014-06-11	R.cache	Fast and light-weight caching (memoization) of objects and results to speed up computations
2014-06-11	tau	Text Analysis Utilities
2014-06-11	textcat	N-Gram Based Text Categorization
2014-06-11	tm	Text Mining Package
2014-06-11	tm.plugin.alceste	Import texts from files in the Alceste format using the tm text mining framework
2014-06-11	tm.plugin.europresse	Import articles from Europresse using the tm text mining framework
2014-06-11	tm.plugin.lexisnexis	Import articles from LexisNexis using the tm text mining framework
2014-06-11	tm.plugin.mail	Text Mining E-Mail Plug-In
2014-06-11	topicmodels	Topic models
2014-06-10	BEDASSLE	Disentangles the effects of geographic and ecological isolation on genetic differentiation
2014-06-10	BEQI2	Benthic Ecosystem Quality Index 2
2014-06-10	BGLR	Bayesian Generalized Linear Regression
2014-06-10	evolvability	Calculation of evolvability parameters
2014-06-10	exams	Automatic Generation of Exams in R
2014-06-10	gsmoothr	Smoothing tools
2014-06-10	HiCseg	Detection of domains in HiC data
2014-06-10	ICsurv	A package for semiparametric regression analysis of interval-censored data
2014-06-10	openair	Tools for the analysis of air pollution data
2014-06-10	ORCI	Several confidence intervals for the odds ratio
2014-06-10	popdemo	Provides Tools For Demographic Modelling Using Projection Matrices
2014-06-10	PSCBS	Analysis of Parent-Specific DNA Copy Numbers
2014-06-10	qmap	Statistical transformations for post-processing climate model output
2014-06-10	rlme	Rank-based Estimation and Prediction in Random Effects Nested Models
2014-06-10	RSNPset	RSNPset
2014-06-10	SCI	Standardized Climate Indices such as SPI, SRI or SPEI
2014-06-10	SeqFeatR	Calculates possible epitopes and co-mutations
2014-06-09	EBEN	Empirical Bayesian Elastic Net
2014-06-09	helsinki	Helsinki open data R tools
2014-06-09	IsoCI	Confidence intervals for current status data based on transformations and bootstrap
2014-06-09	MCMCglmm	MCMC Generalised Linear Mixed Models
2014-06-09	pgirmess	Data analysis in ecology
2014-06-09	primerTree	primerTree
2014-06-08	Boruta	A wrapper algorithm for all-relevant feature selection
2014-06-08	Luminescence	Package for Luminescence Dating data analysis
2014-06-08	R.rsp	Dynamic generation of scientific reports
2014-06-08	synlik	Synthetic Likelihood methods for intractable likelihoods
2014-06-07	compositions	Compositional Data Analysis
2014-06-07	Cubist	Rule- and Instance-Based Regression Modeling
2014-06-07	genasis	Global ENvironmental ASsessment Information System (GENASIS) computational tools
2014-06-07	hoardeR	hoardeR package
2014-06-07	Interact	Tests for marginal interactions in a 2 class response model
2014-06-07	io	A unified framework for input-output operations in R
2014-06-07	kobe	Tools for the provision of scientific fisheries management advice
2014-06-07	PortRisk	Portfolio Risk Analysis
2014-06-07	Rmalschains	Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R
2014-06-06	BEST	Bayesian Estimation Supersedes the t-Test
2014-06-06	equivalence	Provides tests and graphics for assessing tests of equivalence
2014-06-06	KFAS	Kalman Filter and Smoother for Exponential Family State Space Models
2014-06-06	memgene	Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps
2014-06-06	tweedie	Tweedie exponential family models
2014-06-05	AR1seg	Segmentation of an autoregressive Gaussian process of order 1
2014-06-05	diffIRT	Diffusion IRT models for Response and Response Time Data
2014-06-05	maptools	Tools for reading and handling spatial objects
2014-06-05	mbest	Moment-Based Estimation for Hierarchical Models
2014-06-05	SpatialEpi	Methods and Data for Spatial Epidemiology
2014-06-05	vbsr	Variational Bayes Spike Regression Regularized Linear Models
2014-06-04	agRee	Various Methods for Measuring Agreement
2014-06-04	ChargeTransport	Charge Transfer Rates and Charge Carrier Mobilities
2014-06-04	GIGrvg	Random variate generator for the GIG distribution
2014-06-04	kequate	The kernel method of test equating
2014-06-04	rsdepth	Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis
2014-06-04	sas7bdat	SAS Database Reader (experimental)
2014-06-04	secrdesign	Sampling Design for Spatially Explicit Capture–Recapture
2014-06-04	sybil	sybil - Efficient Constrained Based Modelling in R
2014-06-04	zoib	Bayesian Inference for Zero/One Inflated Beta Regression
2014-06-03	ebSNP	Genotyping and SNP calling using single-sample next generation sequencing data
2014-06-03	gamlss.add	GAMLSS Additive
2014-06-03	gstudio	Analyses and functions related to the spatial analysis of genetic marker data
2014-06-03	mapdata	Extra Map Databases
2014-06-03	popgraph	This is an R package that constructs and manipulates population graphs
2014-06-03	sorvi	Finnish Open Government Data Toolkit
2014-06-02	adehabitatLT	Analysis of animal movements
2014-06-02	CORE	Cores of Recurrent Events
2014-06-02	dissUtils	Utilities for making pairwise comparisons of multivariate data
2014-06-02	HiveR	2D and 3D Hive Plots for R
2014-06-02	lmomco	L-moments, Censored L-moments, Trimmed L-moments, L-comoments, and Many Distributions
2014-06-02	Mposterior	Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
2014-06-02	NCBI2R	NCBI2R-An R package to navigate and annotate genes and SNPs
2014-06-02	orloca	The package deals with Operations Research LOCational Analysis models
2014-06-02	rHealthDataGov	Retrieve data sets from the HealthData.gov data API
2014-06-02	tableone	Create "Table 1" to describe baseline characteristics
2014-06-01	acss	Algorithmic Complexity for Short Strings
2014-06-01	aster	Aster Models
2014-06-01	rmetasim	An individual-based population genetic simulation environment
2014-05-31	ChemoSpec	Exploratory Chemometrics for Spectroscopy
2014-05-31	ggtern	An extension to ggplot2, for the creation of ternary diagrams
2014-05-31	lasso2	L1 constrained estimation aka ‘lasso’
2014-05-31	pbdSLAP	Programming with Big Data – Scalable Linear Algebra Packages
2014-05-31	pbo	Probability of Backtest Overfitting
2014-05-31	RcppGSL	Rcpp integration for GNU GSL vectors and matrices
2014-05-31	ripa	R Image Processing and Analysis
2014-05-31	rplotengine	R as a plotting engine
2014-05-31	statmod	Statistical Modeling
2014-05-31	STPGA	Selection of Training Populations by Genetic Algorithm
2014-05-31	taRifx.geo	Collection of various spatial functions
2014-05-30	argparser	Command-line argument parser
2014-05-30	ARPobservation	Tools for simulating different methods of observing behavior based on alternating renewal processes
2014-05-30	chngpt	Change Point Logistic Regression
2014-05-30	IBDsim	Simulation of chromosomal regions shared by family members
2014-05-30	interventionalDBN	Interventional Inference for Dynamic Bayesian Networks
2014-05-30	kdetrees	Nonparametric method for identifying discordant phylogenetic trees
2014-05-30	mstate	Data preparation, estimation and prediction in multi-state models
2014-05-30	qcr	Quality control and reliability
2014-05-30	RSGHB	Functions for Hierarchical Bayesian Estimation: A Flexible Approach
2014-05-30	SensitivityCaseControl	Sensitivity Analysis for Case-Control Studies
2014-05-30	TBEST	Tree Branches Evaluated Statistically for Tightness
2014-05-30	wsrf	Weighted Subspace Random Forest
2014-05-29	bootruin	A bootstrap test for the probability of ruin in the classical risk process
2014-05-29	fda.usc	Functional Data Analysis and Utilities for Statistical Computing (fda.usc)
2014-05-29	hamlet	Hierarchical Optimal Matching and Machine Learning Toolbox
2014-05-29	LearnBayes	Functions for Learning Bayesian Inference
2014-05-29	pairwise	Rasch Model Parameters by Pairwise Algorithm
2014-05-29	stargazer	LaTeX/HTML code and ASCII text for well-formatted regression and summary statistics tables
2014-05-29	taRifx	Collection of utility and convenience functions
2014-05-28	dostats	Compute statistics helper functions
2014-05-28	gtools	Various R programming tools
2014-05-28	harvestr	A Parallel Simulation Framework
2014-05-28	ivlewbel	Uses heteroscedasticity to estimate mismeasured and endogenous regressor models
2014-05-28	ordBTL	Modelling comparison data with ordinal response
2014-05-28	SAVE	Bayesian emulation, calibration and validation of computer models
2014-05-28	seg	A set of tools for measuring spatial segregation
2014-05-28	SINGLE	Estimate sparse dynamic graphs using the Smooth Incremental Graphical Lasso Estimation (SINGLE) algorithm
2014-05-27	bbmle	Tools for general maximum likelihood estimation
2014-05-27	bmmix	Bayesian multinomial mixture
2014-05-27	bootLR	Bootstrapped confidence intervals for (negative) likelihood ratio tests
2014-05-27	capm	Companion Animal Population Management
2014-05-27	DiceEval	Construction and evaluation of metamodels
2014-05-27	frm	Regression analysis of fractional responses
2014-05-27	gems	Generalized multistate simulation model
2014-05-27	GPLTR	Generalized Partially Linear Tree-based Regression Model
2014-05-27	metagen	Inference in Meta Analysis and Meta Regression
2014-05-27	micromap	Linked Micromap Plots
2014-05-27	PHeval	Evaluation of the proportional hazards assumption with a standardized score process
2014-05-26	biotools	Tools for Biometry and Applied Statistics in Agricultural Science
2014-05-26	constrainedKriging	Constrained, covariance-matching constrained and universal point or block kriging
2014-05-26	DDD	Diversity-dependent diversification
2014-05-26	NHPoisson	Modelling and validation of non homogeneous Poisson processes
2014-05-26	PBD	Protracted birth-death model of diversification
2014-05-26	pbdPROF	Programming with Big Data — MPI Profiling Tools
2014-05-26	SRRS	The Stepwise Response Refinement Screener (SRRS)
2014-05-25	prettyR	Pretty descriptive stats
2014-05-24	bigGP	Distributed Gaussian process calculations
2014-05-24	EMMREML	Fitting mixed models with known covariance structures
2014-05-24	faoutlier	Influential case detection methods for factor analysis and SEM
2014-05-24	glmnet	Lasso and elastic-net regularized generalized linear models
2014-05-24	RSocrata	Download Socrata datasets as R data frames
2014-05-23	alphashape3d	Implementation of the 3D alpha-shape for the reconstruction of 3D sets from a point cloud
2014-05-23	blockTools	Block, assign, and diagnose potential interference in randomized experiments
2014-05-23	fda	Functional Data Analysis
2014-05-23	hyperSpec	Interface for hyperspectral data, i.e. spectra + meta info (spatial, time, concentration, ...)
2014-05-23	lazyWeave	LaTeX Wrappers for R Users
2014-05-23	Modalclust	Hierarchical Modal Clustering
2014-05-23	OrgMassSpecR	Organic Mass Spectrometry
2014-05-23	rpart.utils	Tools for parsing and manipulating rpart objects, including generating machine readable rules
2014-05-23	RSNNS	Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
2014-05-23	tsbridge	Calculate normalising constants for Bayesian time series models
2014-05-23	ucbthesis	UC Berkeley graduate division thesis template
2014-05-22	BCE	Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
2014-05-22	GCD	Global Charcoal Database
2014-05-22	geotopbricks	geotopbricks
2014-05-22	nmcdr	Non-parametric Multiple Change-points Detection
2014-05-22	qgraph	Network-based data visualization
2014-05-22	Storm	Write Storm Bolts in R using the Storm Multi-Language Protocol
2014-05-22	treecm	Centre of mass assessment and consolidation of trees
2014-05-21	autoencoder	An implementation of sparse autoencoder for automatic learning of representative features from unlabeled data
2014-05-21	clues	Clustering Method Based on Local Shrinking
2014-05-21	ggplot2	An implementation of the Grammar of Graphics
2014-05-21	KRLS	Kernel-based Regularized Least squares (KRLS)
2014-05-21	monomvn	Estimation for multivariate normal and Student-t data with monotone missingness
2014-05-21	Rmpi	Interface (Wrapper) to MPI (Message-Passing Interface)
2014-05-21	spatial.gev.bma	Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA)
2014-05-21	sybilSBML	SBML Integration in Package sybil
2014-05-21	Wats	Wrap Around Time Series graphics
2014-05-20	prefmod	Utilities to fit paired comparison models for preferences
2014-05-20	ResourceSelection	Resource Selection (Probability) Functions for Use-Availability Data
2014-05-19	cubfits	Codon Usage Bias Fits
2014-05-19	FLIM	Farewell’s Linear Increments Model
2014-05-19	ggm	A package for Graphical Markov Models
2014-05-19	GRTo	Tools for the analysis of Gutenberg-Richter distributions of earthquake magnitudes
2014-05-19	hawkes	Hawkes process simulation and calibration toolkit
2014-05-19	letsR	Tools for data handling and analysis in macroecology
2014-05-19	MASSTIMATE	Body Mass Estimation Equations for Vertebrates
2014-05-19	oce	Analysis of Oceanographic data
2014-05-19	ODMconverter	tools to convert ODM files
2014-05-19	PVAClone	Population Viability Analysis with Data Cloning
2014-05-19	qlcMatrix	Utility sparse matrix functions for Quantitative Language Comparison
2014-05-19	sharx	Models and Data Sets for the Study of Species-Area Relationships
2014-05-19	sse	Sample size estimation
2014-05-18	cladoRcpp	C++ implementations of phylogenetic cladogenesis calculations
2014-05-18	cstar	Substantive significance testing for regression estimates and marginal effects
2014-05-18	Hankel	Univariate non-parametric two-sample test based on empirical Hankel transforms
2014-05-18	isingLenzMC	Monte Carlo for classical Ising Model
2014-05-18	MC2toPath	Translates information from netcdf files with MC2 output into inter-PVT transitions
2014-05-18	R4CDISC	Read CDISC data files
2014-05-18	robust	Robust Library
2014-05-17	boostr	A modular framework to bag or boost any estimation procedure
2014-05-17	gambin	Fit the GamBin model to species abundance distributions
2014-05-17	mailR	A utility to send emails from R
2014-05-17	micEconAids	Demand Analysis with the Almost Ideal Demand System (AIDS)
2014-05-17	pmr	Probability Models for Ranking Data
2014-05-16	bigrf	Big Random Forests: Classification and Regression Forests for Large Data Sets
2014-05-16	detect	Analyzing Wildlife Data with Detection Error
2014-05-16	dynia	Fit Dynamic Intervention Model
2014-05-16	FGN	Fractional Gaussian Noise and power law decay time series model fitting
2014-05-16	fields	Tools for spatial data
2014-05-16	geiger	Analysis of evolutionary diversification
2014-05-16	mefa4	Multivariate Data Handling with S4 Classes and Sparse Matrices
2014-05-16	mvctm	Multivariate Variance Components Tests for Multilevel Data
2014-05-16	pbapply	Adding Progress Bar to '*apply' Functions
2014-05-16	PBSddesolve	Solver for Delay Differential Equations
2014-05-16	QRM	Provides R-language Code to Examine Quantitative Risk Management Concepts
2014-05-16	rspa	Adapt numerical records to fit (in)equality restrictions with the Successive Projection Algorithm
2014-05-16	Skillings.Mack	The Skillings-Mack test Statistic for block designs with missing observations
2014-05-15	DoubleExpSeq	Differential Exon Usage Test for RNA-Seq data via Empirical Bayes Shrinkage of the Dispersion Parameter
2014-05-15	monitoR	Acoustic template detection in R
2014-05-15	wq	Exploring water quality monitoring data
2014-05-14	ALDqr	Quantile Regression Using Asymmetric Laplace Distribution
2014-05-14	erpR	Event-related potentials (ERP) analysis, graphics and utility functions
2014-05-14	hydroApps	Tools and models for hydrological applications
2014-05-14	imputeR	A General Imputation Framework in R
2014-05-14	LogisticDx	Diagnostic tests for logistic regression models
2014-05-14	mixtools	Tools for analyzing finite mixture models
2014-05-14	phyloTop	Phylogenetic Tree Topological Properties Evaluator
2014-05-14	pkgmaker	Package development utilities
2014-05-14	rvHPDT	Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees
2014-05-14	shp2graph	Convert a SpatialLinesDataFrame object to a "igraph-class" object
2014-05-14	tdm	A Tool for Therapeutic Drug Monitoring (TDM)
2014-05-13	adegenet	adegenet: an R package for the exploratory analysis of genetic and genomic data
2014-05-13	cutoffR	CUTOFF: A Spatio-temporal Imputation Method
2014-05-13	dynatopmodel	Implementation of the Dynamic TOPMODEL hydrological model
2014-05-13	emdatr	Global Disaster Losses from the EMDAT database Using R
2014-05-13	nplr	N-Parameter Logistic Regression
2014-05-13	PCPS	PCPS - Principal Coordinates of Phylogenetic Structure
2014-05-13	samplingEstimates	Sampling Estimates
2014-05-13	samplingVarEst	Sampling Variance Estimation
2014-05-13	SpatialVx	Spatial Forecast Verification
2014-05-13	survMisc	Miscellaneous functions for survival data
2014-05-13	turfR	TURF Analysis for R
2014-05-12	CORElearn	Classification, regression, feature evaluation and ordinal evaluation
2014-05-12	dti	Analysis of diffusion weighted imaging (DWI) data
2014-05-12	finiteruinprob	Computation of the probability of ruin within a finite time horizon
2014-05-12	GWmodel	Geographically weighted models
2014-05-12	stilt	Separable Gaussian Process Interpolation (Emulation)
2014-05-12	VSURF	Variable Selection Using Random Forests
2014-05-11	BerlinData	Easy access to Berlin related data
2014-05-11	siplab	Spatial individual-plant modelling
2014-05-11	TFMPvalue	Efficient and accurate P-value computation for Position Weight Matrices
2014-05-11	vines	Multivariate Dependence Modeling with Vines
2014-05-10	hpoPlot	Functions to plot graphviz style graphs of sets of HPO terms
2014-05-10	recalls	Access U.S. Federal Government Recall Data
2014-05-10	rmatio	Read and write matlab files
2014-05-10	RPublica	ProPublica API Client
2014-05-10	rSCA	An R Package for Stepwise Cluster Analysis
2014-05-09	akmeans	Adaptive Kmeans algorithm based on threshold
2014-05-09	blowtorch	Constrained optimization via stochastic gradient descent
2014-05-09	DiceDesign	Designs of Computer Experiments
2014-05-09	lgcp	Log-Gaussian Cox Process
2014-05-09	msap	Statistical analysis for Methylation-sensitive Amplification Polymorphism data
2014-05-08	BayesGESM	Bayesian Analysis of Generalized Elliptical Semiparametric Models
2014-05-08	fishMod	Fits Poisson-sum-of-Gammas GLMs, Tweedie GLMs, and delta log-normal mdoels
2014-05-08	gendata	Generate and modify synthetic datasets
2014-05-08	iRepro	Reproducibility for Interval-Censored Data
2014-05-08	outbreaker	Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data
2014-05-08	PPtree	Projection pursuit classification tree
2014-05-08	ProfessR	Grades Setting and Exam Maker
2014-05-08	psgp	Projected Spatial Gaussian Process (psgp) methods
2014-05-08	rbundler	Rbundler manages an application's dependencies systematically and repeatedly
2014-05-08	Rwave	Time-Frequency analysis of 1-D signals
2014-05-08	sensR	Thurstonian models for sensory discrimination
2014-05-08	slfm	Tools for fitting sparse latent factor model
2014-05-07	bda	Density Estimation for Binned/Weighted Data
2014-05-07	bdvis	Biodiversity Data Visualizations
2014-05-07	BlakerCI	Blaker's binomial confidence limits
2014-05-07	broman	Karl Broman's R code
2014-05-07	CALIBERrfimpute	Multiple imputation using MICE and Random Forest
2014-05-07	cancerTiming	Estimation of temporal ordering of cancer abnormalities
2014-05-07	CollocInfer	Collocation Inference for Dynamic Systems
2014-05-07	Dominance	ADI (average dominance index), social network graphs with dual directions, and music notation graph
2014-05-07	freestats	Statistical algorithms used in common data mining course
2014-05-07	futile.matrix	Random matrix generation and manipulation
2014-05-07	genSurv	Generating multi-state survival data
2014-05-07	glm2	Fitting Generalized Linear Models
2014-05-07	gplm	Generalized partial linear models (GPLM)
2014-05-07	MAMS	Designing Multi-Arm Multi-Stage Studies
2014-05-07	metap	Meta-analysis of significance values
2014-05-07	noncensus	U.S. Census Regional and Demographic Data
2014-05-07	ocedata	Oceanographic datasets for Oce
2014-05-07	PCGSE	Principal Component Gene Set Enrichment
2014-05-07	RDS	Respondent-Driven Sampling
2014-05-07	RObsDat	Store your observations: R-Interface to the Observations Data Model from QUASHI
2014-05-07	seqminer	Efficiently Read Sequence Data (VCF format, BCF format and METAL format) into R
2014-05-07	tawny	Provides various portfolio optimization strategies including random matrix theory and shrinkage estimators
2014-05-06	bandit	Functions for simple A/B split test and multi-armed bandit analysis
2014-05-06	FLR	Fuzzy Logic Rule Classifier
2014-05-06	HHG	Heller-Heller-Gorfine Tests of Independence
2014-05-06	KappaV	Calculates "vectorial Kappa", an index of congruence between patchy mosaics
2014-05-06	networkreporting	Tools for using network reporting estimators
2014-05-06	RcmdrPlugin.MPAStats	R Commander Plug-in for MPA Statistics
2014-05-06	sharpshootR	A collection of functions to support soil survey
2014-05-06	tawny.types	Common types for tawny
2014-05-06	VBmix	Variational Bayesian mixture models
2014-05-05	dams	Dams in the United States from the National Inventory of Dams (NID)
2014-05-05	GUTS	GUTS: Fast Calculation of the Likelihood of a Stochastic Survival Model
2014-05-05	MCMC.OTU	Bayesian analysis of multivariate counts data
2014-05-05	nlmrt	Functions for nonlinear least squares solutions
2014-05-05	polyclip	Polygon Clipping
2014-05-05	REdaS	Companion Package to the Book “R: Einführung durch angewandte Statistik”
2014-05-05	truncSP	Semi-parametric estimators of truncated regression models
2014-05-05	wtcrsk	Competing risks regression models with covariate-adjusted censoring weight
2014-05-04	endorse	R Package for Analyzing Endorsement Experiments
2014-05-04	hydrogeo	Groundwater data presentation and interpretation
2014-05-03	OrdinalLogisticBiplot	Biplot representations of ordinal variables
2014-05-03	sglr	An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test
2014-05-03	spatialprobit	Spatial Probit Models
2014-05-02	BalancedSampling	Balanced and spatially balanced sampling
2014-05-02	benchmark	Benchmark Experiments Toolbox
2014-05-02	GeneFeST	Bayesian calculation of gene-specific FST from genomic SNP data
2014-05-02	HK80	Conversion Tools for HK80 Geographical Coordinate System
2014-05-02	irtProb	Utilities and Probability Distributions Related to Multidimensional Person Item Response Models
2014-05-02	NominalLogisticBiplot	Biplot representations of categorical data
2014-05-02	NPCD	Nonparametric Methods for Cognitive Diagnosis
2014-05-02	rcppbugs	R binding for cppbugs
2014-05-02	RcppSMC	Rcpp bindings for Sequential Monte Carlo
2014-05-01	benford.analysis	Benford Analysis for data validation and forensic analytics
2014-05-01	dynsurv	Dynamic models for survival data
2014-05-01	JM	Joint Modeling of Longitudinal and Survival Data
2014-05-01	lifecontingencies	A package to perform actuarial mathematics for life contingencies insurances
2014-05-01	lqmm	Linear Quantile Mixed Models
2014-05-01	MultiCNVDetect	Multiple Copy Number Variation Detection
2014-05-01	nplplot	Plotting linkage and association results
2014-05-01	ocean	Biophysical Oceanography Tools
2014-05-01	PTE	Personalized Treatment Evaluator
2014-04-30	CMPControl	Control Charts for Conway-Maxwell-Poisson Distribution
2014-04-30	DAAG	Data Analysis And Graphics data and functions
2014-04-30	Deducer	Deducer: A data analysis GUI for R
2014-04-30	lar	History of labour relations package
2014-04-30	midasr	Mixed Data Sampling Regression
2014-04-30	PBC	Product of Bivariate Copulas (PBC)
2014-04-30	pdfCluster	Cluster analysis via nonparametric density estimation
2014-04-30	RgoogleMaps	Overlays on Google map tiles in R
2014-04-30	robustHD	Robust methods for high-dimensional data
2014-04-30	soilDB	Soil Database Interface
2014-04-30	SoilR	Models of Soil Organic Matter Decomposition
2014-04-29	bayesDem	Graphical User Interface for bayesTFR, bayesLife and bayesPop
2014-04-29	BayesLCA	Bayesian Latent Class Analysis
2014-04-29	BayesPen	Bayesian Penalized Credible Regions
2014-04-29	bbefkr	Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
2014-04-29	diveRsity	diveRsity: Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In
2014-04-29	evaluate	Parsing and evaluation tools that provide more details than the default
2014-04-29	fastclime	A fast solver for parameterized lp problems and constrained l1 minimization approach to sparse precision matrix estimation
2014-04-29	hierNet	A Lasso for Hierarchical Interactions
2014-04-29	MBA	Multilevel B-spline Approximation
2014-04-29	mpoly	Symbolic computation and more with multivariate polynomials
2014-04-29	RMAWGEN	RMAWGEN (R Multi-site Auto-regressive Weather GENerator), a package to generate daily time series of precipitation and temperature from monthly mean values
2014-04-29	uniReg	Unimodal penalized spline regression using B-splines
2014-04-28	EasyMARK	Utility functions for working with mark-recapture data
2014-04-28	GGEBiplotGUI	GGEBiplotGUI: Interactive GGE Biplots in R
2014-04-28	maSAE	Mandallaz' model-assisted small area estimators
2014-04-28	mcheatmaps	Multiple matrices heatmap visualization
2014-04-28	pxR	PC-Axis with R
2014-04-28	TcGSA	Time-course Gene Set Analysis
2014-04-28	tvm	Time Value of Money Functions
2014-04-28	unmarked	Models for Data from Unmarked Animals
2014-04-27	bootstrap	Functions for the Book "An Introduction to the Bootstrap"
2014-04-27	mdatools	Multivariate data analysis for chemometrics
2014-04-27	MGLM	Multivariate Response Generalized Linear Models
2014-04-27	plusser	A Google+ Interface for R
2014-04-27	QCA3	Yet another package for Qualitative Comparative Analysis
2014-04-27	solaR	Solar Photovoltaic Systems
2014-04-26	geeM	Fit Generalized Estimating Equations
2014-04-26	HistData	Data sets from the history of statistics and data visualization
2014-04-26	Rpdb	Read, write, visualize and manipulate PDB files
2014-04-26	RWeka	R/Weka interface
2014-04-25	adehabitat	Analysis of habitat selection by animals
2014-04-25	chemCal	Calibration functions for analytical chemistry
2014-04-25	DandEFA	Dandelion Plot for R-mode Exploratory Factor Analysis
2014-04-25	dplR	Dendrochronology Program Library in R
2014-04-25	DynClust	Denoising and clustering for dynamical image sequence (2D or 3D)+T
2014-04-25	flux	Flux rate calculation from dynamic closed chamber measurements
2014-04-25	ICEbox	Individual Conditional Expectation Plot Toolbox
2014-04-25	move	Visualizing and analyzing animal track data
2014-04-25	optiRum	Miscellaneous functions for finance / credit risk analysts
2014-04-25	predfinitepop	Predictive Inference on Totals and Averages of Finite Populations Segmented in Planned and Unplanned Domains
2014-04-25	RSvgDevice	An R SVG graphics device
2014-04-24	binhf	Haar-Fisz functions for binomial data
2014-04-24	clusterfly	Explore clustering interactively using R and GGobi
2014-04-24	EvCombR	Evidence Combination in R
2014-04-24	falcon	Finding Allele-specific Copy Number in Next-Generation Sequencing Data
2014-04-24	MIICD	Multiple Imputation for interval censored data regression
2014-04-24	MILC	MIcrosimulation Lung Cancer (MILC) model
2014-04-24	mvMORPH	Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
2014-04-24	polywog	Bootstrapped Basis Regression with Oracle Model Selection
2014-04-24	Rgbp	Gaussian, Poisson, and Binomial Hierarchical Modeling
2014-04-24	rggobi	Interface between R and GGobi
2014-04-24	rpubchem	rpubchem - Interface to the PubChem Collection
2014-04-24	sand	Statistical Analysis of Network Data with R
2014-04-24	SPODT	Spatial Oblique Decision Tree
2014-04-24	SurvRegCensCov	Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate
2014-04-23	classifly	Explore classification models in high dimensions
2014-04-23	meifly	Interactive model exploration using GGobi
2014-04-23	micEconCES	Analysis with the Constant Elasticity of Substitution (CES) function
2014-04-23	NormalLaplace	The Normal Laplace Distribution
2014-04-23	packHV	A few useful functions for statisticians
2014-04-23	phenability	Nonparametric Stability Analysis
2014-04-23	reshape	Flexibly reshape data
2014-04-23	reshape2	Flexibly reshape data: a reboot of the reshape package
2014-04-23	SNPassoc	SNPs-based whole genome association studies
2014-04-23	tourr	Implement tour methods in pure R code
2014-04-22	ads	Spatial point patterns analysis
2014-04-22	apmsWAPP	Pre- and Postprocessing for AP-MS data analysis based on spectral counts
2014-04-22	Bchron	Radiocarbon dating, age-depth modelling, relative sea level rate estimation, and non-parametric phase modelling
2014-04-22	bear	Average bioequivalence and bioavailability data analysis tool
2014-04-22	crackR	Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
2014-04-22	DIFlasso	A penalty approach to Differential Item Functioning in Rasch Models
2014-04-22	dynamicTreeCut	Methods for detection of clusters in hierarchical clustering dendrograms
2014-04-22	FDboost	Boosting functional regression models
2014-04-22	ggthemes	Extra themes, scales and geoms for ggplot
2014-04-22	igraph	Network analysis and visualization
2014-04-22	IQCC	Improved Quality Control Charts
2014-04-22	kcirt	k-Cube Thurstonian IRT Models
2014-04-22	ltmle	Longitudinal Targeted Maximum Likelihood Estimation
2014-04-22	memoise	Memoise functions
2014-04-22	micEcon	Microeconomic Analysis and Modelling
2014-04-22	micEconSNQP	Symmetric Normalized Quadratic Profit Function
2014-04-22	opm	Analysing Phenotype Microarray and Growth Curve Data
2014-04-22	polyapost	Simulating from the Polya posterior
2014-04-22	profr	An alternative display for profiling information
2014-04-22	quipu	Summary charts of micro satellite profiles for a set of biological samples
2014-04-22	R2MLwiN	Running MLwiN from within R
2014-04-22	R2STATS	A GTK GUI for fitting and comparing GLM and GLMM in R
2014-04-22	scales	Scale functions for graphics
2014-04-22	sqlshare	API for access to SQLShare database
2014-04-22	userfriendlyscience	Quantitative analysis made accessible
2014-04-22	VineCopula	Statistical inference of vine copulas
2014-04-21	GSAgm	Gene Set Analysis using the Gamma Method
2014-04-21	LaF	Fast access to large ASCII files
2014-04-20	kolmim	An improved evaluation of Kolmogorov's distribution
2014-04-19	openNLP	Apache OpenNLP Tools Interface
2014-04-19	RApiSerialize	R API Serialization
2014-04-19	Reol	R interface to the Encyclopedia of Life
2014-04-19	RTextureMetrics	Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices
2014-04-19	rWBclimate	A package for accessing World Bank climate data
2014-04-18	AnthropMMD	A GUI for Mean Measures of Divergence
2014-04-18	bayesQR	Bayesian quantile regression
2014-04-18	Bclim	Bayesian Palaeoclimate Reconstruction from Pollen
2014-04-18	regRSM	Random Subspace Method (RSM) for linear regression
2014-04-18	SEERaBomb	SEER Setup and Use with A-Bomb Data
2014-04-17	ATmet	Advanced Tools for Metrology
2014-04-17	ModelMap	Creates Random Forest and Stochastic Gradient Boosting Models, and applies them to GIS .img files to build detailed prediction maps
2014-04-17	MSQC	Multivariate Statistical Quality Control
2014-04-17	poisson.glm.mix	Fit high dimensional mixtures of Poisson GLMs
2014-04-16	AFLPsim	Hybrid simulation and genome scan for dominant markers
2014-04-16	bigalgebra	BLAS routines for native R matrices and big.matrix objects
2014-04-16	GEVcdn	GEV conditional density estimation network
2014-04-16	mizer	Multi-species sIZE spectrum modelling in R
2014-04-16	PropCIs	Various confidence interval methods for proportions
2014-04-16	psd	Adaptive, sine-multitaper power spectral density estimation
2014-04-16	Rdpack	Update and manipulate Rd documentation objects
2014-04-16	scidb	An R interface to SciDB
2014-04-16	simboot	Simultaneous inference for diversity indices
2014-04-15	Blaunet	Calculate and Analyze Blau statuses for measuring social distance
2014-04-15	ensembleBMA	Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
2014-04-15	HiLMM	Estimation of heritability in high dimensional Linear Mixed Models
2014-04-15	Johnson	Johnson Transformation
2014-04-15	mapStats	Geographic display of survey data statistics
2014-04-15	MPCI	Multivariate Process Capability Indices (MPCI)
2014-04-15	NBPSeq	Negative Binomial Models for RNA-Sequencing Data
2014-04-15	RGIFT	Create quizzes in GIFT Format
2014-04-15	scar	Shape-Constrained Additive Regression: a Maximum Likelihood Approach
2014-04-15	scio	Sparse Column-wise Inverse Operator
2014-04-14	AMORE	A MORE flexible neural network package
2014-04-14	DivE	Diversity Estimator
2014-04-14	LOGICOIL	LOGICOIL: multi-state prediction of coiled-coil oligomeric state
2014-04-14	multiPIM	Variable Importance Analysis with Population Intervention Models
2014-04-14	pumilioR	Pumilio in R
2014-04-14	QuasiSeq	Analyzing RNA sequence count tables using quasi-likelihood
2014-04-14	soundecology	Soundscape ecology
2014-04-13	compound.Cox	Regression estimation based on the compound covariate method under the Cox proportional hazard model
2014-04-13	FGSG	Feature grouping and selection over an undirected graph
2014-04-13	hydroPSO	Particle Swarm Optimisation, with focus on Environmental Models
2014-04-13	MCMC.qpcr	Bayesian analysis of qRT-PCR data
2014-04-13	RcppBDT	Rcpp bindings for the Boost Date_Time library
2014-04-13	SensoMineR	Sensory data analysis with R
2014-04-12	BootPR	Bootstrap Prediction Intervals and Bias-Corrected Forecasting
2014-04-12	earlywarnings	Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
2014-04-12	fastM	Fast Computation of Multivariate M-estimators
2014-04-12	Rcsdp	R interface to the CSDP semidefinite programming library
2014-04-11	extWeibQuant	Estimate the lower extreme quantile with the censored Weibull MLE and censored Weibull Mixture
2014-04-11	foreach	Foreach looping construct for R
2014-04-11	gRapfa	Acyclic Probabilistic Finite Automata
2014-04-11	iterators	Iterator construct for R
2014-04-11	rvTDT	population control weighted rare-variants TDT
2014-04-11	sequences	Generic and biological sequences
2014-04-10	archetypes	Archetypal Analysis
2014-04-10	CatDyn	Fishery Stock Assessment by Catch Dynamic Models
2014-04-10	dataview	Human readable data presentation
2014-04-10	gam	Generalized Additive Models
2014-04-10	gridSVG	Export grid graphics as SVG
2014-04-10	grt	General Recognition Theory
2014-04-10	ora	Convenient Tools for Working with Oracle Databases
2014-04-10	orca	Orca: Counting graphlet orbits in sparse graphs
2014-04-10	PSMix	Population structure inference using mixture model
2014-04-10	RcppCNPy	Rcpp bindings for NumPy files
2014-04-10	toaster	analytics and visualization with Aster Database
2014-04-09	bit	A class for vectors of 1-bit booleans
2014-04-09	bit64	A S3 class for vectors of 64bit integers
2014-04-09	cuttlefish.model	An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
2014-04-09	drmdel	Dual empirical likelihood inference under density ratio models in the presence of multiple samples
2014-04-09	ff	memory-efficient storage of large data on disk and fast access functions
2014-04-09	GHQp	Gauss Hermite Quadrature with pruning
2014-04-09	metaLik	Likelihood inference in meta-analysis and meta-regression models
2014-04-09	PBSadmb	ADMB for R Using Scripts or GUI
2014-04-09	spsmooth	spsmooth: An Extension Package for 'mgcv'
2014-04-09	ThreeWay	Three-way component analysis
2014-04-09	TSjson	TSdbi extension for importing time series from web sources via JSON
2014-04-08	bcrm	Bayesian continual reassessment method (CRM) designs for Phase I dose-finding trials
2014-04-08	coxphw	Weighted Estimation in Cox Regression
2014-04-08	EWGoF	Goodness-of-fit tests for the Exponential and two-parameter Weibull distributions
2014-04-08	smoothHR	Smooth Hazard Ratio Curves taking a Reference Value
2014-04-08	spectral.methods	Singular Spectrum Analysis (SSA) tools for time series analysis
2014-04-08	TSsql	Generic SQL helper functions for TSdbi SQL plugins
2014-04-07	disclap	Discrete Laplace Exponential Family
2014-04-07	MMS	Fixed effects Selection in Linear Mixed Models
2014-04-07	ncdf.tools	Easier ncdf file handling
2014-04-07	NPS	Convenience functions and tests for working with the Net Promoter Score (NPS)
2014-04-07	PBSmodelling	GUI Tools Made Easy: Interact with Models, Explore Data, Give Dynamic Presentations
2014-04-07	rotations	Tools for Working with Rotation Data
2014-04-07	sotkanet	Sotkanet R Tools
2014-04-07	tuneR	Analysis of music and speech
2014-04-06	gdata	Various R programming tools for data manipulation
2014-04-05	acss.data	Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
2014-04-05	argparse	Command line optional and positional argument parser
2014-04-05	bbemkr	Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
2014-04-05	isotonic.pen	Penalized Isotonic Regression in one and two dimensions
2014-04-05	nonrandom	Stratification and matching by the propensity score
2014-04-05	PBSmapping	Mapping Fisheries Data and Spatial Analysis Tools
2014-04-04	aRpsDCA	Arps Decline Curve Analysis in R
2014-04-04	CARBayes	Spatial areal unit modelling
2014-04-04	EasyABC	EasyABC: performing efficient approximate Bayesian computation sampling schemes
2014-04-04	EcoHydRology	A community modeling foundation for Eco-Hydrology
2014-04-04	ERP	Significance analysis of Event-Related Potentials data
2014-04-04	fts	R interface to tslib (a time series library in c++)
2014-04-04	lattice	Lattice Graphics
2014-04-04	neuroim	neuroim: R software for reading, writing and representing brain imaging data
2014-04-04	optparse	Command line option parser
2014-04-04	palinsol	Insolation for palaeoclimate studies
2014-04-04	signal	Signal processing
2014-04-03	csampling	Functions for Conditional Simulation in Regression-Scale Models
2014-04-03	doRedis	Foreach parallel adapter for the rredis package
2014-04-03	findpython	Python tools to find an acceptable python binary
2014-04-03	JBTools	JBs tools and helper functions
2014-04-03	marg	Approximate marginal inference for regression-scale models
2014-04-03	Methplot	Visualize the methylation patterns
2014-04-03	nlreg	Higher Order Inference for Nonlinear Heteroscedastic Models
2014-04-03	pcg	Preconditioned Conjugate Gradient Algorithm for solving Ax=b
2014-04-03	rDVR	The rDVR package allows you to start stop and save a video server from within R
2014-04-03	TrackReconstruction	Reconstruct animal tracks from magnetometer, accelerometer, depth and optional speed data
2014-04-02	clue	Cluster ensembles
2014-04-02	depmix	Dependent Mixture Models
2014-04-02	fifer	A collection of miscellaneous functions
2014-04-02	gstat	spatial and spatio-temporal geostatistical modelling, prediction and simulation
2014-04-02	kimisc	Kirill's miscellaneous functions
2014-04-02	lpint	Local polynomial estimators of intensity function or its derivatives
2014-04-02	lsa	Latent Semantic Analysis
2014-04-02	mcmc	Markov Chain Monte Carlo
2014-04-02	OAIHarvester	Harvest Metadata Using OAI-PMH v2.0
2014-04-02	potts	Markov Chain Monte Carlo for Potts Models
2014-04-02	rankhazard	Rank-hazard plots
2014-04-02	Rchoice	Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters
2014-04-02	relations	Data Structures and Algorithms for Relations
2014-04-02	Rfacebook	Access to Facebook API via R
2014-04-02	skmeans	Spherical k-Means Clustering
2014-04-02	slam	Sparse Lightweight Arrays and Matrices
2014-04-02	sybilccFBA	Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT)
2014-04-02	ump	Uniformly Most Powerful Tests
2014-04-01	GenOrd	Simulation of ordinal and discrete variables with given correlation matrix and marginal distributions
2014-04-01	paramlink	Parametric linkage analysis in R
2014-04-01	tosls	Instrumental Variables Two Stage Least Squares estimation
2014-03-31	abd	The Analysis of Biological Data
2014-03-31	evdbayes	Bayesian Analysis in Extreme Value Theory
2014-03-31	factas	Data Mining Methods for Data Streams
2014-03-31	geoscale	Geological timescale plot
2014-03-31	r2d2	Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution
2014-03-31	RImageJROI	Read ImageJ Region of Interest (ROI) files
2014-03-31	sparsediscrim	Sparse and Regularized Discriminant Analysis
2014-03-31	treemap	Treemap visualization
2014-03-31	WrightMap	Wright Map: IRT item-person map with ConQuest integration
2014-03-30	Ckmeans.1d.dp	Optimal k-means clustering for one-dimensional data
2014-03-30	partsm	Periodic Autoregressive Time Series Models
2014-03-30	ptw	Parametric Time Warping
2014-03-30	rcdd	rcdd (Computational Geometry)
2014-03-30	trust	Trust Region Optimization
2014-03-30	TunePareto	Multi-objective parameter tuning for classifiers
2014-03-28	aCRM	Convenience functions for analytical Customer Relationship Management
2014-03-28	ddalpha	DDalpha-classifier, depth-calculating methods and associated functions
2014-03-28	egcm	Engle-Granger cointegration models
2014-03-28	EMA	Easy Microarray data Analysis
2014-03-28	FacPad	Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
2014-03-28	fanovaGraph	Building Kriging models from FANOVA graphs
2014-03-28	FinTS	Companion to Tsay (2005) Analysis of Financial Time Series
2014-03-28	foreign	Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ..
2014-03-28	GraphPCA	GraphPCA, Graphical tools of histogram PCA
2014-03-28	invGauss	Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data
2014-03-28	MMMS	Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification
2014-03-28	nnet	Feed-forward Neural Networks and Multinomial Log-Linear Models
2014-03-28	opmdata	Example data for analysing OmniLog(R) Phenotype Microarray data
2014-03-28	pdmod	Proximal/distal modeling framework for Pavlovian conditioning phenomena
2014-03-28	pks	Probabilistic Knowledge Structures
2014-03-28	polyaAeppli	Implementation of the Polya-Aeppli distribution
2014-03-28	rpart	Recursive Partitioning and Regression Trees
2014-03-28	simMSM	Simulation of event histories based on nonlinear hazard rate functions and potentially nonlinear covariate effects
2014-03-28	spatial	Functions for Kriging and Point Pattern Analysis
2014-03-27	CDVine	Statistical inference of C- and D-vine copulas
2014-03-27	etm	Empirical Transition Matrix
2014-03-27	iFad	An integrative factor analysis model for drug-pathway association inference
2014-03-27	MetaSKAT	Meta analysis for SNP-set (Sequence) Kernel Association Test
2014-03-27	rstudioapi	Safely access the RStudio API
2014-03-27	synchronicity	Boost mutex functionality for R
2014-03-27	TeachingSampling	Selection of samples and parameter estimation in finite population
2014-03-27	wesanderson	A Wes Anderson Palette Generator
2014-03-26	fclust	Fuzzy clustering
2014-03-26	MPDiR	Data sets and scripts for Modeling Psychophysical Data in R
2014-03-26	parfm	Parametric Frailty Models
2014-03-26	Rcolombos	Interface to Colombos Compendia using the exposed REST API
2014-03-26	Rphylip	An R interface for PHYLIP
2014-03-26	SubLasso	Gene selection using Lasso for Microarray data with user-defined genes fixed in model
2014-03-25	BayesVarSel	Bayesian Variable selection in Linear Models
2014-03-25	bipartite	Visualising bipartite networks and calculating some (ecological) indices
2014-03-25	cem	Coarsened Exact Matching
2014-03-25	clValid	Validation of Clustering Results
2014-03-25	CMF	Collective matrix factorization
2014-03-25	Devore7	Data sets from Devore's "Prob and Stat for Eng (7th ed)"
2014-03-25	GenSA	R functions for Generalized Simulated Annealing
2014-03-25	gRain	Graphical Independence Networks
2014-03-25	ivfixed	Instrumental fixed effect panel data model
2014-03-25	kml3d	K-means for joint Longitudinal data
2014-03-25	mcga	Machine coded genetic algorithms for real-valued optimization problems
2014-03-25	RProtoBuf	R Interface to the Protocol Buffers API
2014-03-24	ccgarch	Conditional Correlation GARCH models
2014-03-24	CCpop	One and two locus GWAS of binary phenotype with case-control-population design
2014-03-24	Geneland	Detection of structure from multilocus genetic data
2014-03-24	ISOcodes	Selected ISO codes
2014-03-24	kml	K-means for Longitudinal data
2014-03-24	lmom	L-moments
2014-03-24	lsdv	Least square dummy variable regression
2014-03-24	ouch	Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
2014-03-24	OutlierDC	Outlier Detection using quantile regression for Censored Data
2014-03-23	freqparcoord	Novel Methods for Parallel Coordinates
2014-03-23	gRbase	A package for graphical modelling in R
2014-03-23	hybridEnsemble	Build, deploy and evaluate a Hybrid Ensemble
2014-03-23	kernelFactory	Kernel Factory: An ensemble of kernel Machines
2014-03-23	OutlierDM	Outlier detection for replicated high-throughput data
2014-03-22	BiDimRegression	Calculates the bidimensional regression between two 2D configurations
2014-03-22	dna	Differential Network Analysis
2014-03-22	fbati	Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
2014-03-22	HGNChelper	Handy functions for working with HGNC gene symbols and Affymetrix probeset identifiers
2014-03-22	kintone	kintone REST client package for R
2014-03-22	RND	Risk Neutral Density Extraction Package
2014-03-22	Unicode	Unicode data and utilities
2014-03-21	caschrono	Séries temporelles avec R - Méthodes et cas
2014-03-21	MARSS	Multivariate Autoregressive State-Space Modeling
2014-03-21	PwrGSD	Power in a Group Sequential Design
2014-03-21	Rmixmod	An interface for MIXMOD
2014-03-21	Stack	Stylized concatenation of data.frames or ffdfs
2014-03-20	AmpliconDuo	Statistical Analysis Of Amplicon Data Of The Same Sample To Identify Artefacts
2014-03-20	deepnet	deep learning toolkit in R
2014-03-20	formula.tools	Utilities for working with formulas, expressions, calls and other R objects
2014-03-20	gIPFrm	Generalized Iterative Proportional Fitting for Relational Models
2014-03-20	koRpus	An R Package for Text Analysis
2014-03-20	longitudinalData	Longitudinal Data
2014-03-20	MasterBayes	ML and MCMC Methods for Pedigree Reconstruction and Analysis
2014-03-20	Paneldata	Linear models for panel data
2014-03-20	phylobase	Base package for phylogenetic structures and comparative data
2014-03-20	pspearman	Spearman's rank correlation test
2014-03-20	raters	An index of inter-rater agreement among a set of raters
2014-03-20	shinyBS	Twitter Bootstrap Components for Shiny
2014-03-19	BIPOD	BIPOD (Bayesian Inference for Partially Observed diffusions)
2014-03-19	DBFTest	DBF test of no difference between groups
2014-03-19	extrafont	Tools for using fonts
2014-03-19	fontcm	Computer Modern font for use with extrafont package
2014-03-19	geospacom	Helper package to facilitate the generation of distance matrices used in the package spacom
2014-03-19	latentnet	Latent position and cluster models for statistical networks
2014-03-19	PKreport	A reporting pipeline for checking population pharmacokinetic model assumption
2014-03-19	PoisNor	Simultaneous generation of multivariate data with Poisson and normal marginals
2014-03-19	RcmdrPlugin.SCDA	Rcmdr plugin for designing and analyzing single-case experiments
2014-03-19	resemble	Regression and similarity evaluation for memory-based learning in spectral chemometrics
2014-03-18	brainR	Helper functions to misc3d and rgl packages for brain imaging
2014-03-18	comato	Analysis of Concept Maps
2014-03-18	DSsim	Distance Sampling Simulations
2014-03-18	NMF	Algorithms and framework for Nonnegative Matrix Factorization (NMF)
2014-03-18	RSDA	RSDA - R to Symbolic Data Analysis
2014-03-18	TPmsm	Estimation of transitions probabilities in multistate models
2014-03-18	tractor.base	A package for reading, manipulating and visualising magnetic resonance images
2014-03-18	twang	Toolkit for Weighting and Analysis of Nonequivalent Groups
2014-03-17	crqa	Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
2014-03-17	date	Functions for handling dates
2014-03-17	EBS	Exact Bayesian Segmentation
2014-03-17	influence.ME	Tools for detecting influential data in mixed effects models
2014-03-17	IPMpack	Builds and analyses Integral Projection Models (IPMs)
2014-03-17	Multiclasstesting	Performance of N-ary classification testing
2014-03-17	plot3Drgl	Plotting multi-dimensional data - using rgl
2014-03-17	polynom	A collection of functions to implement a class for univariate polynomial manipulations
2014-03-17	semiArtificial	Generator of semi-artificial data
2014-03-17	StatDataML	implementation of the StatDataML proposal
2014-03-17	uplift	Uplift Modeling
2014-03-16	blme	Bayesian Linear Mixed-Effects Models
2014-03-16	darch	Package for deep architectures and Restricted-Bolzmann-Machines
2014-03-16	dendextendRcpp	Faster dendrogram manipulation using Rcpp
2014-03-16	GEVStableGarch	ARMA-GARCH/APARCH models with GEV and stable distributions
2014-03-16	logmult	Log-multiplicative models, including association models
2014-03-15	plot2groups	Plot scatter points for two groups of values
2014-03-15	sbioPN	sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets
2014-03-15	ssmrob	Robust estimation and inference in sample selection models
2014-03-14	gof	Model-diagnostics based on cumulative residuals
2014-03-14	metaRNASeq	Meta-analysis of RNA-seq data
2014-03-14	pensim	Simulation of high-dimensional data and parallelized repeated penalized regression
2014-03-14	qtlnet	Causal Inference of QTL Networks
2014-03-14	rgauges	R wrapper to Gaug.es API
2014-03-14	rgpui	UI for the RGP genetic programming framework
2014-03-14	solr	General purpose R interface to Solr
2014-03-14	ykmeans	K-means using a target variable
2014-03-13	doSNOW	Foreach parallel adaptor for the snow package
2014-03-13	PharmPow	Pharmacometric Power calculations for mixed study designs
2014-03-12	binomlogit	Efficient MCMC for Binomial Logit Models
2014-03-12	gmt	Interface between GMT Map-Making Software and R
2014-03-12	itertools	Iterator Tools
2014-03-12	LIStest	Tests of independence based on the Longest Increasing Subsequence
2014-03-12	MVA	An Introduction to Applied Multivariate Analysis with R
2014-03-12	normtest	Tests for Normality
2014-03-12	plotMCMC	MCMC Diagnostic Plots
2014-03-12	reportr	A general message and error reporting system
2014-03-12	resample	Resampling functions
2014-03-12	scape	Statistical Catch-at-Age Plotting Environment
2014-03-12	sparsenet	Fit sparse linear regression models via nonconvex optimization
2014-03-11	arulesViz	Visualizing Association Rules and Frequent Itemsets
2014-03-11	bayesmix	Bayesian Mixture Models with JAGS
2014-03-11	gemtc	GeMTC network meta-analysis
2014-03-11	MEMSS	Data sets from Mixed-effects Models in S
2014-03-11	mlmRev	Examples from Multilevel Modelling Software Review
2014-03-11	performanceEstimation	An infra-structure for performance estimation of predictive models
2014-03-11	plsRbeta	Partial least squares Regression for beta regression models
2014-03-11	rgexf	An R package to build GEXF graph files
2014-03-11	rmaf	Refined Moving Average Filter
2014-03-11	SASmixed	Data sets from "SAS System for Mixed Models"
2014-03-11	seriation	Infrastructure for seriation
2014-03-10	aroma.affymetrix	Analysis of large Affymetrix microarray data sets
2014-03-10	cplm	Compound Poisson linear models
2014-03-10	DOBAD	Analysis of Discretely Observed linear Birth-And-Death(-and-immigration) Markov Chains
2014-03-10	hqmisc	Miscellaneous convenience functions and dataset
2014-03-10	hrr	Horizontal rule for the R language
2014-03-10	metRology	Support for metrological applications
2014-03-10	MixMAP	Implements the MixMAP algorithm
2014-03-10	pt	Computational models for prospect theory and other theories of risky decision making
2014-03-10	relax	relax – R Editor for Literate Analysis and lateX
2014-03-10	ss3sim	Fisheries stock assessment simulation testing with Stock Synthesis
2014-03-10	XML2R	EasieR XML data collection
2014-03-09	BurStFin	Burns Statistics Financial
2014-03-09	gpairs	gpairs: The Generalized Pairs Plot
2014-03-09	gRapHD	Efficient selection of undirected graphical models for high-dimensional datasets
2014-03-09	micromapST	Linked Micromap Plots for U. S. States
2014-03-09	regsubseq	Detect and Test Regular Sequences and Subsequences
2014-03-09	RQuantLib	R interface to the QuantLib library
2014-03-09	SGCS	Spatial Graph based Clustering Summaries for spatial point patterns
2014-03-09	spatialsegregation	Segregation measures for multitype spatial point patterns
2014-03-09	tmle	Targeted Maximum Likelihood Estimation
2014-03-08	adehabitatHR	Home range Estimation
2014-03-08	adehabitatHS	Analysis of habitat selection by animals
2014-03-08	aroma.core	Core methods and classes used by aroma.* packages part of The Aroma Framework
2014-03-08	depend.truncation	Statistical inference for parametric and semiparametric models based on dependently truncated data
2014-03-08	EnviroStat	Statistical analysis of environmental space-time processes
2014-03-08	ffbase	Basic statistical functions for package ff
2014-03-08	FunChisq	Nonparametric functional chi-square tests
2014-03-08	gSeg	Graph-Based Change-Point Detection (g-Segmentation)
2014-03-07	conicfit	Algorithms for fitting circles, ellipses and conics based on the work by Prof. Nikolai Chernov
2014-03-07	CPHshape	Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
2014-03-07	doRNG	Generic Reproducible Parallel Backend for foreach Loops
2014-03-07	dr	Methods for dimension reduction for regression
2014-03-07	geneSignatureFinder	A Gene-signatures finder tools
2014-03-07	gptk	Gaussian Processes Tool-Kit
2014-03-07	Jmisc	Julian Miscellaneous Function
2014-03-07	Momocs	Shape Analysis of Outlines
2014-03-07	RMediation	An R Package for Mediation Analysis Confidence Intervals
2014-03-07	SixSigma	Six Sigma Tools for Quality and Process Improvement
2014-03-07	svd	Interfaces to various state-of-art SVD and eigensolvers
2014-03-07	svyPVpack	A package for complex surveys including plausible values
2014-03-07	VBLPCM	Variational Bayes Latent Position Cluster Model for networks
2014-03-06	bdpv	Inference and design for predictive values in binary diagnostic tests
2014-03-06	covreg	A simultaneous regression model for the mean and covariance
2014-03-06	eiwild	Ecological Inference with individual and aggregate data
2014-03-06	flowfield	Forecasts future values of a univariate time series
2014-03-06	mixRasch	Mixture Rasch Models with JMLE
2014-03-06	multiDimBio	Multivariate Analysis and Visualization for Biological Data
2014-03-06	MultiOrd	Generation of multivariate ordinal variates
2014-03-06	polySegratio	Simulate and test marker dosage for dominant markers in autopolyploids
2014-03-06	polySegratioMM	Bayesian mixture models for marker dosage in autopolyploids
2014-03-06	rngtools	Utility functions for working with Random Number Generators
2014-03-06	rrBLUP	Ridge regression and other kernels for genomic selection
2014-03-05	aws	Adaptive Weights Smoothing
2014-03-05	awsMethods	Class and Methods definitions for packages aws, adimpro, fmri, dwi
2014-03-05	bagRboostR	Ensemble bagging and boosting classifiers
2014-03-05	expectreg	Expectile and Quantile Regression
2014-03-05	FDRreg	False discovery rate regression
2014-03-05	gWidgets2	Rewrite of gWidgets API for simplified GUI construction
2014-03-05	hbim	Hill/Bliss Independence Model for Combination Vaccines
2014-03-05	homals	Gifi Methods for Optimal Scaling
2014-03-05	inarmix	Mixture models for longitudinal count data
2014-03-05	partDSA	Partitioning using deletion, substitution, and addition moves
2014-03-05	picante	R tools for integrating phylogenies and ecology
2014-03-05	rebird	Interface to eBird
2014-03-05	StatRank	Statistical Rank Aggregation: Inference, Evaluation, and Visualization
2014-03-05	xkcd	Plotting ggplot2 graphics in a XKCD style
2014-03-04	bigpca	PCA, transpose and multicore functionality for big.matrix objects
2014-03-04	bioPN	Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
2014-03-04	factorplot	factorplot
2014-03-04	insol	Solar Radiation
2014-03-04	iqLearn	Interactive Q-learning
2014-03-04	leiv	Bivariate linear errors-in-variables estimation
2014-03-04	ridge	Ridge Regression with automatic selection of the penalty parameter
2014-03-04	sesem	Spatially explicit structural equation modeling
2014-03-04	Table1Heatmap	Table 1 Heatmap
2014-03-04	tmvtnorm	Truncated Multivariate Normal and Student t Distribution
2014-03-04	weights	Weighting and Weighted Statistics
2014-03-03	bestglm	Best Subset GLM
2014-03-03	cudaBayesreg	CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
2014-03-03	ForeCA	ForeCA - Forecastable Component Analysis
2014-03-03	ICGE	Estimation of number of clusters and identification of atypical units
2014-03-03	neldermead	R port of the Scilab neldermead module
2014-03-03	parboost	Distributed Model-Based Boosting
2014-03-03	RADami	R Package for Phylogenetic Analysis of RADseq Data
2014-03-03	simFrame	Simulation framework
2014-03-03	SSsimple	State space models
2014-03-03	svIDE	SciViews GUI API - IDE and code editor functions
2014-03-03	tree	Classification and regression trees
2014-03-03	visualFields	Statistical methods for visual fields
2014-03-03	widals	Weighting by Inverse Distance with Adaptive Least Squares for Massive Space-Time Data
2014-03-02	fCertificates	fCertificates - Basics of Certificates and Structured Products Valuation
2014-03-02	optimbase	R port of the Scilab optimbase module
2014-03-02	partitionMetric	Compute a distance metric between two partitions of a set
2014-03-02	pastecs	Package for Analysis of Space-Time Ecological Series
2014-03-02	SciViews	SciViews GUI API - Main package
2014-03-02	SimCorMultRes	Simulates Correlated Multinomial Responses
2014-03-02	svDialogs	SciViews GUI API - Dialog boxes
2014-03-02	svDialogstcltk	SciViews GUI API - Dialog boxes using Tcl/Tk
2014-03-02	svGUI	SciViews GUI API - Functions to manage GUIs
2014-03-02	svHttp	SciViews GUI API - R HTTP server
2014-03-02	svKomodo	SciViews GUI API - Functions to interface with Komodo Edit/IDE
2014-03-02	svMisc	SciViews GUI API - Miscellaneous functions
2014-03-02	svSocket	SciViews GUI API - R Socket Server
2014-03-02	svTools	SciViews GUI API - Tools (wrapper for packages tools and codetools)
2014-03-02	svUnit	SciViews GUI API - Unit testing
2014-03-02	svWidgets	SciViews GUI API - Widgets & Windows
2014-03-02	tcltk2	Tcl/Tk Additions
2014-03-02	zooimage	Analysis of numerical zooplankton images
2014-03-01	amap	Another Multidimensional Analysis Package
2014-03-01	amen	Additive and multiplicative effects modeling of networks and relational data
2014-03-01	aqr	Interface methods to use with an ActiveQuant Master Server
2014-03-01	BaSTA	A package for estimating age-specific survival from incomplete capture-recapture/recovery data
2014-03-01	CoImp	Copula based imputation method
2014-03-01	mcll	Monte Carlo Local Likelihood Estimation
2014-03-01	MTS	All-purpose toolkit for analyzing multivariate time series (MTS) and estimating multivariate volatility models
2014-03-01	RAHRS	Data fusion filters for Attitude Heading Reference System (AHRS) with several variants of the Kalman filter and the Mahoney and Madgwick filters
2014-02-28	anchors	Statistical analysis of surveys with anchoring vignettes
2014-02-28	bPeaks	bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
2014-02-28	doMC	Foreach parallel adaptor for the multicore package
2014-02-28	doParallel	Foreach parallel adaptor for the parallel package
2014-02-28	huge	High-dimensional Undirected Graph Estimation
2014-02-28	morgenstemning	Color schemes compatible with red-green color perception difficulties
2014-02-28	networkDynamic	Dynamic Extensions for Network Objects
2014-02-28	rpanel	Simple interactive controls for R using the tcltk library
2014-02-28	stpp	Space-Time Point Pattern simulation, visualisation and analysis
2014-02-27	aroma.apd	A probe-level data file format used by aroma.affymetrix [DEPRECATED]
2014-02-27	cts	Continuous Time Autoregressive Models
2014-02-27	GDELTtools	Download, slice, and normalize GDELT data
2014-02-27	isocir	Isotonic Inference for Circular data
2014-02-27	ndl	Naive Discriminative Learning
2014-02-27	panelAR	Estimation of Linear AR(1) Panel Data Models with Cross-Sectional Heteroskedasticity and/or Correlation
2014-02-27	R.huge	Methods for accessing huge amounts of data [DEPRECATED]
2014-02-27	SDD	Serial Dependence Diagrams
2014-02-27	sdnet	Soft Discretization-based Bayesian Network Inference
2014-02-27	zoo	S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
2014-02-26	ALKr	Generate Age-Length Keys for fish populations
2014-02-26	FPDC	PD-clustering and factor PD-clustering
2014-02-26	pencopula	Flexible Copula Density Estimation with Penalized Hierarchical B-Splines
2014-02-26	plyr	Tools for splitting, applying and combining data
2014-02-26	reutils	Talk to the NCBI EUtils
2014-02-26	RSpincalc	Package for converting between attitude representations: DCM, Euler angles, Quaternions, and Euler vectors
2014-02-26	rvgtest	Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators
2014-02-26	scrypt	scrypt key derivation functions for R
2014-02-26	seas	Seasonal analysis and graphics, especially for climatology
2014-02-26	snp.plotter	snp.plotter
2014-02-25	CTT	Classical Test Theory Functions
2014-02-25	HMMpa	Analysing accelerometer data using hidden Markov models
2014-02-25	MatrixEQTL	MatrixEQTL: Ultra fast eQTL analysis via large matrix operations
2014-02-25	pendensity	Density Estimation with a Penalized Mixture Approach
2014-02-25	R.oo	R object-oriented programming with or without references
2014-02-25	saemix	Stochastic Approximation Expectation Maximization (SAEM) algorithm
2014-02-25	SimuChemPC	Simulation process of 4 selection methods in predicting chemical potent compounds
2014-02-25	tspmeta	Instance feature calculation and evolutionary instance generation for the traveling salesman problem
2014-02-24	accrual	Bayesian Accrual Prediction
2014-02-24	biom	An interface package (beta) for the BIOM file format
2014-02-24	compare	Comparing Objects for Differences
2014-02-24	FinCal	Time Value of Money, time series analysis and Computational Finance
2014-02-24	fractaldim	Estimation of fractal dimensions
2014-02-24	graphicsQC	Quality Control for Graphics in R
2014-02-24	gridBase	Integration of base and grid graphics
2014-02-24	GSM	Gamma Shape Mixture
2014-02-24	lmodel2	Model II Regression
2014-02-24	msir	Model-based Sliced Inverse Regression
2014-02-24	MSwM	Fitting Markov Switching Models
2014-02-24	mvc	Multi-View Clustering
2014-02-24	pcrcoal	A package implementing the coalescent approach to PCR simulation developed by Weiss and von Haeseler (NAR, 1997)
2014-02-24	RegClust	Cluster analysis via regression coefficients
2014-02-24	RYoudaoTranslate	R package provide functions to translate English words into Chinese
2014-02-24	spikeSlabGAM	Bayesian variable selection and model choice for generalized additive mixed models
2014-02-24	StableEstim	Estimate the 4 parameters of stable law using different methods
2014-02-24	tabplot	Tableplot, a visualization of large datasets
2014-02-24	tsfa	Time Series Factor Analysis
2014-02-23	eeptools	Convenience functions for education data
2014-02-23	EMMIXcontrasts	Contrasts in mixed effects for EMMIX model with random effects
2014-02-23	growcurves	Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects
2014-02-23	parma	Portfolio Allocation and Risk Management Applications
2014-02-23	psData	A package to download regularly maintained political science data sets and make commonly used, but infrequently updated variables based on this data
2014-02-23	R2SWF	Convert R Graphics to Flash Animations
2014-02-23	sysfonts	Loading system fonts into R
2014-02-22	baseline	Baseline Correction of Spectra
2014-02-22	blender	Analyze biotic homogenization of landscapes
2014-02-22	bursts	Markov model for bursty behavior in streams
2014-02-22	cairoDevice	Cairo-based cross-platform antialiased graphics device driver
2014-02-22	DSL	Distributed Storage and List
2014-02-22	hcci	Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
2014-02-22	hive	Hadoop InteractiVE
2014-02-22	lavaan.survey	Complex survey Structural Equation Modeling (SEM)
2014-02-22	plumbr	Mutable and dynamic data models
2014-02-22	Rgnuplot	R interface for gnuplot
2014-02-21	arf3DS4	Activated Region Fitting, fMRI data analysis (3D)
2014-02-21	bcool	Bringing to light significant Columns correlated with Organism Labels
2014-02-21	clere	CLERE methodology for simultaneous variables clustering and regression
2014-02-21	dynlm	Dynamic Linear Regression
2014-02-21	eulerian	eulerian: A package to find eulerian paths from graphs
2014-02-21	gamlss.spatial	Package to fit spatial data in gamlss
2014-02-21	longCatEDA	Package for Plotting Categorical Longitudinal and Time-Series Data
2014-02-21	lpmodeler	Modeler for linear programs (LP) and mixed integer linear programs (MILP)
2014-02-21	ncdf4.helpers	Helper functions for use with the ncdf4 package
2014-02-21	RDieHarder	R interface to the dieharder RNG test suite
2014-02-21	Rmosek	The R-to-MOSEK Optimization Interface
2014-02-21	rsnps	Get SNP (Single-Nucleotide Polymorphism) data on the web
2014-02-21	selectr	Translate CSS Selectors to XPath Expressions
2014-02-21	SPAr	Perform rare variants association analysis based on summation of partition approaches
2014-02-21	treebase	An R package for discovery, access and manipulation of online phylogenies
2014-02-21	TTAinterfaceTrendAnalysis	Temporal Trend Analysis Graphical Interface
2014-02-21	zendeskR	Zendesk API Wrapper
2014-02-20	ARTP	Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
2014-02-20	denstrip	Density strips and other methods for compactly illustrating distributions
2014-02-20	DiagTest3Grp	Diagnostic test summary measures for three ordinal groups
2014-02-20	diffusionMap	Diffusion map
2014-02-20	diveMove	Dive analysis and calibration
2014-02-20	diversitree	diversitree: comparative phylogenetic analyses of diversification
2014-02-20	fftwtools	Wrapper for fftw3: includes 1-D, univariate and multivariate, and 2-D transform
2014-02-20	lorec	LOw Rand and sparsE Covariance matrix estimation
2014-02-20	mixreg	Functions to fit mixtures of regressions
2014-02-20	OLScurve	OLS growth curve trajectories
2014-02-20	restorepoint	Debugging with restore points
2014-02-20	RFreak	R/FrEAK interface
2014-02-19	gld	Estimation and use of the generalised (Tukey) lambda distribution
2014-02-19	mGSZ	Gene set analysis based on GSZ-scoring function and asymptotic p-value
2014-02-18	forams	Foraminifera and Community Ecology Analyses
2014-02-18	gdistance	distances and routes on geographical grids
2014-02-18	metrumrg	Pharmacometric tools for data preparation, modeling, simulation, and reporting
2014-02-18	pbdDEMO	Programming with Big Data – Demonstrations of pbd Packages
2014-02-18	rfisheries	R interface for fisheries data
2014-02-18	SimSeq	Nonparametric Simulation of RNA-Seq Data
2014-02-17	bshazard	Nonparametric Smoothing of the Hazard Function
2014-02-17	CVD	Color Vision Deficiencies
2014-02-17	edeR	Email Data Extraction Using R
2014-02-17	eha	Event History Analysis
2014-02-17	grppenalty	Concave 1-norm and 2-norm group penalty in linear and logistic regression
2014-02-17	mutoss	Unified multiple testing procedures
2014-02-17	praktikum	Kvantitatiivsete meetodite praktikumi asjad / Functions used in the course "Quantitative methods in behavioural sciences" (SHPH.00.004), University of Tartu
2014-02-17	RcmdrPlugin.pointG	Graphical POINT of view for questionnaire data Rcmdr Plug-In
2014-02-17	SoftClustering	Soft Clustering Algorithms
2014-02-17	turner	Turn vectors and lists of vectors into indexed structures
2014-02-17	YPmodel	The Short-term and Long-term Hazard Ratio Model for Survival Data
2014-02-16	DTComPair	Comparison of Binary Diagnostic Tests in a Paired Study Design
2014-02-16	sdtoolkit	Scenario Discovery Tools to Support Robust Decision Making
2014-02-15	BMhyd	PCM for Hybridization
2014-02-15	CRAC	Cosmology R Analysis Code
2014-02-15	mistral	Methods in Structural Reliability
2014-02-15	rSFA	Slow Feature Analysis in R
2014-02-14	CCMnet	Simulate Congruence Class Model for Networks
2014-02-14	prospectr	Miscellaneous functions for processing and sample selection of vis-NIR diffuse reflectance data
2014-02-14	rtiff	A tiff reader for R
2014-02-14	surface	Fitting Hansen Models to Investigate Convergent Evolution
2014-02-13	KATforDCEMRI	Kinetic analysis and visualization of DCE-MRI data
2014-02-13	rsae	Robust Small Area Estimation
2014-02-13	wrspathrow	Functions for working with Worldwide Reference System (WRS)
2014-02-12	bio.infer	Predict environmental conditions from biological observations
2014-02-12	CHNOSZ	Chemical Thermodynamics and Activity Diagrams
2014-02-12	ecosim	Toolbox for Aquatic Ecosystem Modeling
2014-02-12	expm	Matrix exponential
2014-02-12	fitdistrplus	Help to fit of a parametric distribution to non-censored or censored data
2014-02-12	MarkowitzR	Statistical significance of the Markowitz portfolio
2014-02-12	MatrixModels	Modelling with Sparse And Dense Matrices
2014-02-12	mcr	Method Comparison Regression
2014-02-12	MLCM	Maximum Likelihood Conjoint Measurement
2014-02-12	packdep	Mapping dependencies among R packages
2014-02-12	QCGWAS	Quality Control of Genome Wide Association Study results
2014-02-12	RInside	C++ classes to embed R in C++ applications
2014-02-12	SAM	Sparse Additive Modelling
2014-02-12	wrspathrowData	Data used by the wrspathrow package
2014-02-11	bfa	Bayesian Factor Analysis
2014-02-11	chromoR	Analysis of chromosomal interactions data (correction, segmentation and comparison)
2014-02-11	chron	Chronological objects which can handle dates and times
2014-02-11	dlmodeler	Generalized Dynamic Linear Modeler
2014-02-11	filehash	Simple key-value database
2014-02-11	frair	Functional response analysis in R
2014-02-11	gamboostMSM	Estimating multistate models using gamboost()
2014-02-11	HMMCont	Hidden Markov Model for Continuous Observations Processes
2014-02-11	IgorR	Read binary files saved by Igor Pro (including Neuromatic data)
2014-02-11	kknn	Weighted k-Nearest Neighbors
2014-02-11	phenex	Auxiliary functions for phenological data analysis
2014-02-11	scatterplot3d	3D Scatter Plot
2014-02-11	schwartz97	A package on the Schwartz two-factor commodity model
2014-02-10	bmrm	Bundle Methods for Regularized Risk Minimization Package
2014-02-10	FKF	Fast Kalman Filter
2014-02-10	localgauss	Estimating local Gaussian parameters
2014-02-10	npst	Generalization of Hewitt's Seasonality Test
2014-02-10	PCAmixdata	Multivariate analysis for a mixture of quantitative and qualitative data
2014-02-10	rtop	Interpolation of data with variable spatial support
2014-02-10	statnet	Software tools for the Statistical Analysis of Network Data
2014-02-10	tfplot	Time Frame User Utilities
2014-02-09	lambda.tools	Tools for modeling data with functional programming
2014-02-09	phom	Persistent Homology in R
2014-02-09	soc.ca	Specific correspondence analysis for the social sciences
2014-02-09	XNomial	Exact Goodness-Of-Fit Test For Multinomial Data With Fixed Probabilities
2014-02-08	FAiR	Factor Analysis in R
2014-02-08	phyreg	Implements the Phylogenetic Regression of Grafen (1989)
2014-02-08	tmle.npvi	Targeted Minimum Loss Estimation (TMLE) of a NP variable importance of a continuous exposure
2014-02-07	cpca	Methods to perform Common Principal Component Analysis (CPCA)
2014-02-07	gpr	A Minimalistic package to apply Gaussian Process in R
2014-02-07	maxstat	Maximally Selected Rank Statistics
2014-02-07	networkDynamicData	dynamic network datasets
2014-02-07	RcmdrPlugin.EACSPIR	Plugin de R-Commander para el manual EACSPIR
2014-02-07	Ruchardet	R package to detect character encoding
2014-02-07	SYNCSA	SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities
2014-02-06	easynls	Easy nonlinear model
2014-02-06	logcondiscr	Estimate a Log-Concave Probability Mass function from Discrete i.i.d. Observations
2014-02-06	ltsk	local time space kriging
2014-02-06	multiplex	Analysis of Multiple Social Networks with Algebra
2014-02-06	smoothtail	Smooth Estimation of GPD Shape Parameter
2014-02-06	unbalanced	The package implements different data-driven method for unbalanced datasets
2014-02-06	VecStatGraphs2D	Vector analysis using graphical and analytical methods in 2D
2014-02-05	eRm	Extended Rasch Modeling
2014-02-05	paf	Attributable Fraction Function for Censored Survival Data
2014-02-05	Rssa	A collection of methods for singular spectrum analysis
2014-02-05	StrainRanking	Ranking of pathogen strains
2014-02-04	depmixS4	Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
2014-02-04	hydroGOF	Goodness-of-fit functions for comparison of simulated and observed hydrological time series
2014-02-04	igraphdata	A collection of network data sets for the igraph package
2014-02-04	iScreen	image-based High-Throughput RNAi Screening Analysis Tool
2014-02-04	spc	Statistical Process Control – Collection of Some Useful Functions
2014-02-03	frbs	Fuzzy Rule-based Systems for Classification and Regression Tasks
2014-02-03	MAd	Meta-Analysis with Mean Differences
2014-02-03	MetABEL	Meta-analysis of genome-wide SNP association results
2014-02-03	PIGShift	Polygenic Inverse Gamma rate Shifts
2014-02-03	pmclust	Parallel Model-Based Clustering
2014-02-03	sampSurf	Sampling Surface Simulation for Areal Sampling Methods
2014-02-02	optimsimplex	R port of the Scilab optimsimplex module
2014-02-01	SCBmeanfd	Simultaneous Confidence Bands for the Mean of Functional Data
2014-02-01	vbdm	Variational Bayes Discrete Mixture Model
2014-01-31	bqtl	Bayesian QTL mapping toolkit
2014-01-31	EMD	Empirical Mode Decomposition and Hilbert Spectral Analysis
2014-01-31	fdaMixed	Functional data analysis in a mixed model framework
2014-01-31	gdalUtils	Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
2014-01-31	HLMdiag	Diagnostic tools for hierarchical (multilevel) linear models
2014-01-31	jackstraw	Non-parametric Jackstraw for Principal Component Analysis
2014-01-31	loe	Local Ordinal Embedding
2014-01-31	lsr	Companion package to "Learning Statistics with R"
2014-01-31	naturalsort	Natural Ordering
2014-01-31	ndtv	Network Dynamic Temporal Visualizations
2014-01-31	Pomic	Pomic
2014-01-31	rgam	Robust Generalized Additive Model
2014-01-31	SBSA	Simplified Bayesian Sensitivity Analysis
2014-01-31	simplexreg	Regression Analysis of Proportional Data Using Simplex Distribution
2014-01-31	textir	Inverse Regression for Text Analysis
2014-01-30	mmeta	Multivariate Meta-Analysis
2014-01-30	nonlinearTseries	R package for nonlinear time series analysis
2014-01-30	pSI	Specificity Index Statistic
2014-01-30	VariABEL	Testing of genotypic variance heterogeneity to detect potentially interacting SNP
2014-01-29	ENA	Ensemble Network Aggregation
2014-01-29	fdasrvf	Elastic Functional Data Analysis
2014-01-29	lazyData	A LazyData Facility
2014-01-29	PCIT	PCIT algorithm - Partial Correlation Coefficient with Information Theory
2014-01-29	permute	Functions for generating restricted permutations of data
2014-01-29	VoxR	Metrics extraction of trees from T-LiDAR data
2014-01-28	AER	Applied Econometrics with R
2014-01-28	BayesMed	Default Bayesian hypothesis tests for correlation, partial correlation, and mediation
2014-01-28	cacIRT	Classification accuracy and consistency under Item Response Theory
2014-01-28	CVcalibration	Estimation of the Calibration Equation with Error-in Observations
2014-01-28	earth	Multivariate Adaptive Regression Spline Models
2014-01-28	in2extRemes	Into the extRemes Package
2014-01-28	RapidPolygonLookup	Polygon lookup using kd trees
2014-01-28	Rramas	Matrix population models
2014-01-28	SGP	An R Package for the Calculation and Visualization of Student Growth Percentiles & Percentile Growth Trajectories
2014-01-28	TAQMNGR	Manage tick-by-tick transaction data
2014-01-27	drgee	Doubly Robust Generalized Estimating Equations
2014-01-27	dualScale	Dual Scaling Analysis of Multiple Choice Data
2014-01-27	ebal	Entropy reweighting to create balanced samples
2014-01-27	MergeGUI	A GUI for Merging Datasets in R
2014-01-27	Synth	Synthetic Control Group Method for Comparative Case Studies
2014-01-26	oro.dicom	Rigorous - DICOM Input / Output
2014-01-26	RcppClassic	Deprecated 'classic' Rcpp API
2014-01-26	RcppZiggurat	Rcpp integration of different Ziggurat Normal RNG implementations
2014-01-26	RISmed	Download content from NCBI databases
2014-01-26	sqliter	Connection wrapper to SQLite databases
2014-01-25	futile.logger	A logging library for R
2014-01-25	gnmf	Generalized Non-negative Matrix Factorization Based on Renyi Divergence
2014-01-25	irlba	Fast partial SVD by implicitly-restarted Lanczos bidiagonalization
2014-01-25	PEMM	A Penalized EM algorithm incorporating missing-data mechanism
2014-01-25	rbounds	Perform Rosenbaum bounds sensitivity tests for matched and unmatched data
2014-01-25	RWiener	Wiener process distribution functions
2014-01-25	TIMP	a problem solving environment for fitting separable nonlinear models in physics and chemistry applications
2014-01-24	DPw	Semiparametric Bayesian procedure for selecting a subset containing the weakest species with an acceptably high probability
2014-01-24	gconcord	Concord method for Graphical Model Selection
2014-01-24	lmeNB	Fit negative binomial mixed-effect regression model
2014-01-24	lmeNBBayes	Sample from the posterior of the negative binomial mixed-effect regression model. The random effect is modeled with DP mixture of beta distributions
2014-01-24	LSC	Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
2014-01-23	correlate	Multivariate Data Generation by Permutation
2014-01-23	cSFM	Covariate-adjusted Skewed Functional Model (cSFM)
2014-01-23	gitter	an R package for quantification of pinned microbial culture
2014-01-23	hydroTSM	Time series management, analysis and interpolation for hydrological modelling
2014-01-23	interval	Weighted Logrank Tests and NPMLE for interval censored data
2014-01-23	irtoys	Simple interface to the estimation and plotting of IRT models
2014-01-23	jpeg	Read and write JPEG images
2014-01-23	lambda.r	Modeling Data with Functional Programming
2014-01-23	lmtest	Testing Linear Regression Models
2014-01-23	msos	Datasets and Functions used in Multivariate Statistics: Old School by John Marden
2014-01-23	pedantics	Functions to facilitate power and sensitivity analyses for genetic studies of natural populations
2014-01-23	saws	Small-Sample Adjustments for Wald tests Using Sandwich Estimators
2014-01-23	sigclust	Statistical Significance of Clustering
2014-01-22	acs	Download, manipulate, and present data from the US Census American Community Survey
2014-01-22	BayesSingleSub	Computation of Bayes factors for interrupted time-series designs
2014-01-22	c060	Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
2014-01-22	Gammareg	classic gamma regression: joint modeling of mean and shape parameters
2014-01-22	psyphy	Functions for analyzing psychophysical data in R
2014-01-22	RAMpath	Structural Equation Modeling using the reticular action model (RAM) Notation
2014-01-22	rateratio.test	Exact rate ratio test
2014-01-22	rkt	Mann-Kendall test, Seasonal and Regional Kendall Tests
2014-01-22	survival	Survival Analysis
2014-01-22	tergm	Fit, Simulate and Diagnose Models for Network Evolution based on Exponential-Family Random Graph Models
2014-01-21	AID	An R Package to Estimate Box-Cox Power Transformation Parameter
2014-01-21	gvlma	Global Validation of Linear Models Assumptions
2014-01-21	MissMech	Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
2014-01-21	truncnorm	Truncated normal distribution
2014-01-21	useful	A collection of handy, useful functions
2014-01-20	AOfamilies	Aranda-Ordaz (AO) transformation families
2014-01-20	Disake	Discrete associated kernel estimators
2014-01-20	HUM	compute HUM value and visualize ROC curves
2014-01-20	mistat	Data sets, functions and examples from the book:"Modern Industrial Statistics" by Kenett, Zacks and Amberti
2014-01-20	MLDS	Maximum Likelihood Difference Scaling
2014-01-20	SGPdata	Exemplar data sets for SGP analyses
2014-01-19	blockmatrix	blockmatrix: Tools to solve algebraic systems with partitioned matrices
2014-01-19	cda	Coupled dipole approximation of light scattering by clusters of nanoparticles
2014-01-19	IBHM	Approximation using the IBHM method
2014-01-19	ldbounds	Lan-DeMets Method for Group Sequential Boundaries
2014-01-19	mfx	Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
2014-01-19	RHRV	Heart rate variability analysis of ECG data
2014-01-19	RTextTools	Automatic Text Classification via Supervised Learning
2014-01-19	simexaft	simexaft
2014-01-19	WeightedCluster	Clustering of Weighted Data
2014-01-18	gamlss.mx	A GAMLSS add on package for fitting mixture distributions
2014-01-18	gamlss.tr	Generating and fitting truncated (gamlss.family) distributions
2014-01-18	HBSTM	Hierarchical Bayesian Space-Time models for Gaussian space-time data
2014-01-18	NanoStringNorm	Normalize NanoString miRNA and mRNA data
2014-01-18	Sequential	Exact Sequential Analysis for Poisson Data
2014-01-17	additivityTests	Additivity tests in the two way ANOVA with single sub-class numbers
2014-01-17	arulesSequences	Mining frequent sequences
2014-01-17	breakpoint	An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
2014-01-17	dosresmeta	Performing multivariate dose-response meta-analysis
2014-01-17	eventInterval	Sequential event interval analysis
2014-01-17	games	Statistical Estimation of Game-Theoretic Models
2014-01-17	odfWeave	Sweave processing of Open Document Format (ODF) files
2014-01-17	rbhl	R interface to the Biodiversity Heritage Library
2014-01-17	SCORER2	SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences
2014-01-17	wpp2008	World Population Prospects 2008
2014-01-16	bdynsys	Bayesian Dynamical System Model
2014-01-16	blockcluster	Co-Clustering package for binary, contingency, continuous and categorical data-sets
2014-01-16	desirability	Desirabiliy Function Optimization and Ranking
2014-01-16	dfexplore	Explore data.frames by plotting NA and classes of each variable
2014-01-16	fastHICA	Hierarchical Independent Component Analysis: a multi-scale sparse non-orthogonal data-driven basis
2014-01-16	mapproj	Map Projections
2014-01-16	multinbmod	Regression analysis of overdispersed correlated count data
2014-01-16	quadrupen	Sparsity by Worst-Case Quadratic Penalties
2014-01-16	sm	Smoothing methods for nonparametric regression and density estimation
2014-01-15	cba	Clustering for Business Analytics
2014-01-15	clustsig	Significant Cluster Analysis
2014-01-15	fishmove	Prediction of Fish Movement Parameters
2014-01-15	Funclustering	A package for functional data clustering
2014-01-15	GWsignif	Genome-wide significance for whole genome sequencing studies
2014-01-15	hwriterPlus	hwriterPlus: Extending the hwriter Package
2014-01-15	lmomRFA	Regional frequency analysis using L-moments
2014-01-15	loa	loa: various plots, options and add-ins for use with lattice
2014-01-15	mph	Multiscale persistent homology
2014-01-15	OPDOE	OPtimal Design Of Experiments
2014-01-15	RAtmosphere	Standard Atmospheric profiles
2014-01-15	reglogit	Simulation-based Regularized Logistic Regression
2014-01-14	AcceptanceSampling	Creation and evaluation of Acceptance Sampling Plans
2014-01-14	ICEinfer	Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
2014-01-14	iDynoR	R Analysis package for iDynoMiCS Simulation Results
2014-01-14	linkim	Linkage information based genotype imputation method
2014-01-14	oz	Plot the Australian coastline and states
2014-01-14	rEMM	Extensible Markov Model (EMM) for Data Stream Clustering in R
2014-01-14	RockFab	Rock fabric and strain analysis tools
2014-01-14	RXshrink	Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression
2014-01-14	sna	Tools for Social Network Analysis
2014-01-14	TraMineR	Trajectory miner: a toolbox for exploring and rendering sequence data
2014-01-13	ccda	Combined Cluster and Discriminant Analysis
2014-01-13	ecolMod	"A practical guide to ecological modelling - using R as a simulation platform"
2014-01-13	geophys	Geophysics, Continuum Mechanics, Mogi Model
2014-01-13	LIM	Linear Inverse Model examples and solution methods
2014-01-13	MF	Mitigated Fraction
2014-01-13	NetIndices	Estimating network indices, including trophic structure of foodwebs in R
2014-01-13	pkgutils	pkgutils – Utilities for creating R packages
2014-01-13	SCMA	Single-Case Meta-Analysis
2014-01-13	TimeMachine	Time Machine
2014-01-12	pcIRT	IRT models for polytomous and continuous item responses
2014-01-11	DSBayes	Bayesian subgroup analysis in clinical trials
2014-01-11	gamlss.cens	Fitting an interval response variable using gamlss.family distributions
2014-01-11	gamlss.data	GAMLSS Data
2014-01-11	gamlss.demo	Demos for GAMLSS
2014-01-11	kst	Knowledge Space Theory
2014-01-11	tempdisagg	Methods for Temporal Disaggregation and Interpolation of TimeSeries
2014-01-10	citbcmst	CIT Breast Cancer Molecular SubTypes Prediction
2014-01-10	citccmst	CIT Colon Cancer Molecular SubTypes Prediction
2014-01-10	CpGassoc	Association between Methylation and a phenotype of interest
2014-01-10	DiceKriging	Kriging methods for computer experiments
2014-01-10	genalg	R Based Genetic Algorithm
2014-01-10	GroupSeq	A GUI-based program to compute probabilities regarding group sequential designs
2014-01-10	jointPm	Risk estimation using the joint probability method
2014-01-10	networkTomography	Tools for network tomography
2014-01-10	phylosim	R package for simulating biological sequence evolution
2014-01-10	plRasch	Log Linear by Linear Association models and Rasch family models by pseudolikelihood estimation
2014-01-10	poLCA	Polytomous variable Latent Class Analysis
2014-01-10	vectoptim	Vectorized optimization methods
2014-01-09	cwm	Cluster Weighted Models by EM algorithm
2014-01-09	dagR	R functions for directed acyclic graphs
2014-01-09	gpmap	Analysing and plotting genotype-phenotype maps
2014-01-09	IsingSampler	Sampling methods and distribution functions for the Ising model
2014-01-09	mhsmm	Parameter estimation and prediction for hidden Markov and semi-Markov models for data with multiple observation sequences
2014-01-08	CADFtest	This package performs the CADF unit root test proposed in Hansen (1995)
2014-01-08	GRaF	Species distribution modelling using latent Gaussian random fields
2014-01-08	MultiPhen	MultiPhen, a package for the genetic association testing of multiple phenotypes
2014-01-08	numbers	Number-theoretic Functions
2014-01-08	PGM2	Recursive method for construction of nested resolvable designs and uniform designs associated
2014-01-08	WhatIf	WhatIf: Software for Evaluating Counterfactuals
2014-01-07	AdMit	Adaptive Mixture of Student-t distributions
2014-01-07	bayesGARCH	Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
2014-01-07	multic	Quantitative linkage analysis tools using the variance components approach
2014-01-07	PEIP	Functions for Aster Book on Inverse Theory
2014-01-07	rapportools	Miscellaneous (stats) helper functions with sane defaults for reporting
2014-01-07	rfishbase	R Interface to FishBASE
2014-01-07	rriskDistributions	Fitting distributions to given data or known quantiles
2014-01-07	RVowpalWabbit	R interface to the Vowpal Wabbit
2014-01-07	shuffle	The shuffle estimator for explainable variance
2014-01-07	smatr	(Standardised) Major Axis Estimation and Testing Routines
2014-01-07	streamR	Access to Twitter Streaming API via R
2014-01-06	FLLat	Fused Lasso Latent Feature Model
2014-01-06	gte	Generalized Turnbull's estimator
2014-01-06	oem	Orthogonalizing Expectation maximization
2014-01-06	RFOC	Graphics for Spherical Distributions and Earthquake Focal Mechanisms
2014-01-06	robcor	Robust Correlations
2014-01-06	Rquake	Seismic Hypocenter Determination
2014-01-06	RTOMO	Visualization for seismic tomography
2014-01-06	sfa	Stochastic Frontier Analysis
2014-01-06	survSNP	Power and Sample Size Calculations for SNP Association Studies with Censored Time to Event Outcomes
2014-01-06	TeachNet	Fits neural networks to learn about back propagation
2014-01-05	GEOmap	Topographic and Geologic Mapping
2014-01-05	glmmGS	Gauss-Seidel Generalized Linear Mixed Model solver
2014-01-05	RClimMAWGEN	RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations
2014-01-05	R.methodsS3	Utility function for defining S3 methods
2014-01-05	RSEIS	Seismic Time Series Analysis Tools
2014-01-04	DESnowball	Bagging with Distance-based Regression for Differential Gene Expression Analyses
2014-01-04	RPMG	Graphical User Interface (GUI) for interactive R analysis sessions
2014-01-04	SharpeR	Statistical significance of Sharpe ratio
2014-01-04	SWATmodel	A multi-OS implementation of the TAMU SWAT model
2014-01-03	AdaptiveSparsity	Adaptive Sparsity Models
2014-01-03	compHclust	Complementary Hierarchical Clustering
2014-01-03	cosmosR	cosmosR
2014-01-03	datalist	An R package to convert data sets for import into JAGS, WinBUGS and OpenBUGS and to generate data.frames for predicting the effects of particular variables
2014-01-03	fractal	Fractal Time Series Modeling and Analysis
2014-01-03	geozoo	Zoo of Geometric Objects
2014-01-03	glmnetcr	Fit a penalized constrained continuation ratio model for predicting an ordinal response
2014-01-03	glmpathcr	Fit a penalized continuation ratio model for predicting an ordinal response
2014-01-03	qiimer	Work with QIIME Output Files in R
2014-01-03	qrfactor	Simultaneous simulation of Q and R mode factor analyses with Spatial data
2014-01-02	BayesComm	Bayesian community ecology analysis
2014-01-02	binom	Binomial Confidence Intervals For Several Parameterizations
2014-01-02	BioGeoBEARS	BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
2014-01-02	FAMT	Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
2014-01-02	glmmBUGS	Generalised Linear Mixed Models and Spatial Models with WinBUGS, BRugs, or OpenBUGS
2014-01-02	gnm	Generalized Nonlinear Models
2014-01-02	PBImisc	A set of datasets used in my classes or in the book ,,Modele liniowe i mieszane w R, wraz z przykladami w analizie danych”
2014-01-02	PedCNV	An implementation for association analysis with CNV data
2014-01-02	RCA	Relational Class Analysis
2014-01-02	robustgam	Robust Estimation for Generalized Additive Models
2014-01-02	VIMGUI	Visualization and Imputation of Missing Values
2014-01-02	xts	eXtensible Time Series
2014-01-01	mmm	an R package for analyzing multivariate longitudinal data with multivariate marginal models
2014-01-01	PLRModels	Statistical inference in partial linear regression models
2014-01-01	showtext	Enable (any) R Graphics Device to Show Text Using System Fonts
2013-12-31	biplotbootGUI	Bootstrap on Classical Biplots
2013-12-31	DCGL	Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
2013-12-31	fitDRC	Fitting Density Ratio Classes
2013-12-31	lubridate	Make dealing with dates a little easier
2013-12-31	missForest	Nonparametric Missing Value Imputation using Random Forest
2013-12-31	mmm2	Multivariate marginal models with shared regression parameters
2013-12-31	texmex	Statistical modelling of extreme values
2013-12-31	TiddlyWikiR	Create dynamic reports using a TiddlyWiki template
2013-12-30	dcemriS4	A Package for Medical Image Analysis (S4 implementation)
2013-12-30	dtt	Discrete Trigonometric Transforms
2013-12-30	financial	Solving financial problems in R
2013-12-30	mblm	Median-Based Linear Models
2013-12-30	moonsun	Basic astronomical calculations with R
2013-12-30	PIGE	Self contained gene set analysis for gene- and pathway-environment interaction analysis
2013-12-30	sapa	Spectral Analysis for Physical Applications
2013-12-30	sdprisk	Measures of Risk for the Compound Poisson Risk Process with Diffusion
2013-12-30	seawaveQ	U.S. Geological Survey seawaveQ model
2013-12-30	stab	data analysis of drug stability for shelf life estimation
2013-12-30	wmtsa	Wavelet Methods for Time Series Analysis
2013-12-29	BiasedUrn	Biased Urn model distributions
2013-12-29	spate	Spatio-temporal modeling of large data using a spectral SPDE approach
2013-12-28	acm4r	Align-and-Count Method comparisons of RFLP data
2013-12-28	mhurdle	Multiple hurdle Tobit models
2013-12-28	pglm	panel generalized linear model
2013-12-28	plm	Linear Models for Panel Data
2013-12-28	prevR	Estimating regional trends of a prevalence from a DHS
2013-12-28	rgabriel	Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot
2013-12-27	clustrd	Methods for joint dimension reduction and clustering
2013-12-27	extfunnel	Additional Funnel Plot Augmentations
2013-12-27	fptdApprox	Approximation of first-passage-time densities for diffusion processes
2013-12-27	GenABEL	genome-wide SNP association analysis
2013-12-27	GenABEL.data	Package contains data which is used by GenABEL example and test functions
2013-12-27	mlogit	multinomial logit model
2013-12-27	oro.nifti	Rigorous - NIfTI+ANALYZE+AFNI Input / Output
2013-12-27	ROC632	Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling
2013-12-27	saves	Fast load variables
2013-12-27	SIN	A SINful Approach to Selection of Gaussian Graphical Markov Models
2013-12-27	spider	Species Identity and Evolution in R
2013-12-27	truncreg	Truncated Gaussian Regression Models
2013-12-26	cpk	Clinical Pharmacokinetics
2013-12-26	mycobacrvR	Integrative immunoinformatics for Mycobacterial diseases in R platform
2013-12-25	kmc	Kaplan - Meier estimator with constraints for right censored data – a recursive computational algorithm
2013-12-24	evt0	Mean of order p, peaks over random threshold Hill and high quantile estimates
2013-12-24	RcmdrPlugin.sos	Efficiently search the R help pages
2013-12-24	rJava	Low-level R to Java interface
2013-12-24	safeBinaryRegression	Safe Binary Regression
2013-12-24	TSTutorial	Fitting and Predict Time Series Interactive Laboratory
2013-12-23	audio	Audio Interface for R
2013-12-23	genoPlotR	Plot publication-grade gene and genome maps
2013-12-23	MigClim	Implementing dispersal into species distribution models
2013-12-23	pcaL1	Three L1-Norm PCA Methods
2013-12-23	SHIP	SHrinkage covariance Incorporating Prior knowledge
2013-12-23	waveslim	Basic wavelet routines for one-, two- and three-dimensional signal processing
2013-12-22	SamplerCompare	A framework for comparing the performance of MCMC samplers
2013-12-21	JGR	JGR - Java GUI for R
2013-12-21	pa	Performance Attribution for Equity Portfolios
2013-12-21	pcaPA	Parallel Analysis for ordinal and numeric data using polychoric and Pearson correlations with S3 classes
2013-12-21	pmcgd	pmcgd
2013-12-21	RSofia	Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R
2013-12-21	SemiCompRisks	Parametric and semi-parametric analyses of semi-competing risks data
2013-12-21	XiMpLe	A simple XML tree parser and generator
2013-12-20	AdequacyModel	Adequacy of probabilistic models and generation of pseudo-random numbers
2013-12-20	cit	Causal Inference Test
2013-12-20	ipred	Improved Predictors
2013-12-20	LINselect	Selection of linear estimators
2013-12-20	LPS	Linear Predictor Score, for binary inference from multiple continuous variables
2013-12-20	ltm	Latent Trait Models under IRT
2013-12-20	polytomous	Polytomous logistic regression for fixed and mixed effects
2013-12-20	profileR	Profile Analysis of Multivariate Data in R
2013-12-20	PST	Probabilistic Suffix Trees and Variable Length Markov Chains
2013-12-20	ROCt	Time-dependent ROC curve estimation and adaptation to the relative survival context
2013-12-19	AssotesteR	Statistical Tests for Genetic Association Studies
2013-12-19	BBRecapture	Bayesian Behavioural Capture-Recapture Models
2013-12-19	colortools	Tools for colors in a Hue-Saturation-Value (HSV) color model
2013-12-19	minPtest	Gene region-level testing procedure for SNP data, using the min P test resampling approach
2013-12-19	robustloggamma	Robust estimation of the generalized log gamma model
2013-12-19	tikzDevice	R Graphics Output in LaTeX Format
2013-12-19	TilePlot	Characterization of functional genes in complex microbial communities using tiling DNA microarrays
2013-12-18	bvls	The Stark-Parker algorithm for bounded-variable least squares
2013-12-18	cardidates	Identification of Cardinal Dates in Ecological Time Series
2013-12-18	cellVolumeDist	Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
2013-12-18	CRTSize	Sample Size Estimation Functions for Cluster Randomized Trials
2013-12-18	FindMinIC	Find Models with Minimum IC
2013-12-18	HWEBayes	Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing
2013-12-18	maxlike	Model species distributions by estimating the probability of occurrence using presence-only data
2013-12-18	mvna	Nelson-Aalen estimator of the cumulative hazard in multistate models
2013-12-18	PropClust	Propensity Clustering and Decomposition
2013-12-18	RAppArmor	Interfaces to Linux and AppArmor security methods
2013-12-18	RcmdrPlugin.lfstat	Rcmdr Plug-In for low flow analysis
2013-12-18	scalreg	Scaled sparse linear regression
2013-12-18	snowfall	Easier cluster computing (based on snow)
2013-12-18	VHDClassification	Discrimination/Classification in very high dimension with linear and quadratic rules
2013-12-18	wavelets	A package of functions for computing wavelet filters, wavelet transforms and multiresolution analyses
2013-12-18	ycinterextra	Yield curve or zero-coupon prices interpolation and extrapolation
2013-12-17	Demerelate	Functions to calculate relatedness on diploid genetic data
2013-12-17	fastcluster	Fast hierarchical clustering routines for R and Python
2013-12-17	fBonds	Bonds and Interest Rate Models
2013-12-17	fExtremes	Rmetrics - Extreme Financial Market Data
2013-12-17	g.data	Delayed-Data Packages
2013-12-17	iRefR	iRefIndex Manager
2013-12-17	reportRx	Tools for automatically generating reproducible clinical report
2013-12-17	spacom	Spatially weighted context data for multilevel modelling
2013-12-16	highlight	Syntax highlighter
2013-12-16	lawstat	An R package for biostatistics, public policy, and law
2013-12-16	pbdDMAT	Programming with Big Data – Distributed Matrix Methods
2013-12-16	RobRSVD	Robust Regularized Singular Value Decomposition
2013-12-16	simone	Statistical Inference for MOdular NEtworks (SIMoNe)
2013-12-15	fcd	Fused Community Detection
2013-12-15	lpc	Lassoed principal components for testing significance of features
2013-12-15	MVB	Mutivariate Bernoulli log-linear model
2013-12-15	NetSim	A Social Networks Simulation Tool in R
2013-12-15	patchDVI	Package to patch .dvi files
2013-12-15	ryouready	Companion to the 'R your ready?' book
2013-12-15	scuba	Scuba diving calculations and decompression models
2013-12-15	svdvisual	SVD visualization tools
2013-12-14	bayesGDS	Functions to implement Generalized Direct Sampling
2013-12-14	DunnettTests	Software implementation of step-down and step-up Dunnett test procedures
2013-12-14	EMCluster	EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
2013-12-14	fortunes	R Fortunes
2013-12-14	ggsubplot	Explore complex data by embedding subplots within plots
2013-12-14	JoSAE	Functions for some unit-level small area estimators and their variances
2013-12-14	LMERConvenienceFunctions	A suite of functions to back-fit fixed effects and forward-fit random effects, as well as other miscellaneous functions
2013-12-14	MiST	Mixed effects Score Test for continuous outcomes
2013-12-14	pbdBASE	Programming with Big Data – Base Wrappers for Distributed Matrices
2013-12-14	phyclust	Phylogenetic Clustering (Phyloclustering)
2013-12-14	TapeR	Flexible tree taper curves based on semiparametric mixed models
2013-12-13	adhoc	calculate ad hoc distance thresholds for DNA barcoding identification
2013-12-13	amei	Adaptive Management of Epidemiological Interventions
2013-12-13	clusterPower	Power calculations for cluster-randomized and cluster-randomized crossover trials
2013-12-13	geoRglm	geoRglm - a package for generalised linear spatial models
2013-12-13	HIV.LifeTables	HIV calibrated model life tables for countries with generalized HIV epidemics
2013-12-13	Kmisc	Kevin Miscellaneous
2013-12-13	logconcens	Maximum likelihood estimation of a log-concave density based on censored data
2013-12-13	MapGAM	Mapping Smoothed Effect Estimates from Individual-Level Data
2013-12-13	Oncotree	Estimating oncogenetic trees
2013-12-13	PermAlgo	Permutational algorithm to simulate survival data
2013-12-13	plfm	Probabilistic latent feature analysis of two-way two-mode frequency data
2013-12-13	R0	Estimation of R0 and real-time reproduction number from epidemics
2013-12-13	rphast	R interface to PHAST software for comparative genomics
2013-12-13	simctest	Safe implementation of Monte Carlo tests
2013-12-13	skda	Sparse (Multicategory) Kernel Discriminant Analysis
2013-12-13	survrec	Survival analysis for recurrent event data
2013-12-12	BACCO	Bayesian Analysis of Computer Code Output (BACCO)
2013-12-12	betapart	Partitioning beta diversity into turnover and nestedness components
2013-12-12	CombinS	Constructions method of rectangular PBIB and rectangular right angular PBIB(m) (m= 4,5 and 7) designs
2013-12-12	CorrBin	Nonparametrics with clustered binary and multinomial data
2013-12-12	dmt	Dependency Modeling Toolkit
2013-12-12	gcbd	GPU/CPU Benchmarking in Debian-based systems
2013-12-12	languageR	Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics"
2013-12-12	mleur	Maximum likelihood unit root test
2013-12-12	multitable	Simultaneous manipulation of multiple arrays of data, with data.list objects
2013-12-12	Myrrix	Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout
2013-12-12	npbr	Nonparametric boundary regression
2013-12-12	qmrparser	Parser combinator in R
2013-12-12	QTLRel	Tools for mapping of quantitative traits of genetically related individuals and calculating identity coefficients from a pedigree
2013-12-12	RcppDE	Global optimization by differential evolution in C++
2013-12-12	rworldmap	Mapping global data, vector and raster
2013-12-12	sealasso	Standard Error Adjusted Adaptive Lasso
2013-12-12	SeleMix	Selective Editing via Mixture models
2013-12-12	synbreedData	Data for the synbreed package
2013-12-12	tileHMM	Hidden Markov Models for ChIP-on-Chip Analysis
2013-12-12	untb	ecological drift under the UNTB
2013-12-11	aidar	Tools for reading AIDA (http://aida.freehep.org/) files into R
2013-12-11	catnet	Categorical Bayesian Network Inference
2013-12-11	diffractometry	Baseline identification and peak decomposition for x-ray diffractograms
2013-12-11	dtw	Dynamic time warping algorithms
2013-12-11	etable	Easy Table
2013-12-11	ExPosition	Exploratory analysis with the singular value decomposition
2013-12-11	giRaph	The giRaph package for graph representation in R
2013-12-11	gmm	Generalized Method of Moments and Generalized Empirical Likelihood
2013-12-11	grImport	Importing Vector Graphics
2013-12-11	InPosition	Inference Tests for ExPosition
2013-12-11	mathgraph	Directed and undirected graphs
2013-12-11	mlogitBMA	Bayesian Model Averaging for Multinomial Logit Models
2013-12-11	mvngGrAd	Software for moving grid adjustment in plant breeding field trials
2013-12-11	pgs	Precision of Geometric Sampling
2013-12-11	prob	Elementary Probability on Finite Sample Spaces
2013-12-11	random	True random numbers using random.org
2013-12-11	rhosp	Side effect risks in hospital : simulation and estimation
2013-12-11	rpartitions	Code for integer partitioning
2013-12-11	rspear	Calculate SPEARpesticide in R (http://www.systemecology.eu/SPEAR/index.php)
2013-12-11	selectiongain	A tool for calculation and optimization of the expected gain from multi-stage selection
2013-12-11	smfsb	SMfSB 2e: Stochastic Modelling for Systems Biology, second edition
2013-12-11	SOAR	Memory management in R by delayed assignments
2013-12-11	sphet	Estimation of spatial autoregressive models with and without heteroskedastic innovations
2013-12-11	TExPosition	Two-table ExPosition
2013-12-11	TInPosition	Inference tests for TExPosition
2013-12-11	wle	Weighted Likelihood Estimation
2013-12-10	aylmer	A generalization of Fisher's exact test
2013-12-10	Bessel	Bessel – Bessel Functions Computations and Approximations
2013-12-10	bfp	Bayesian Fractional Polynomials
2013-12-10	binomSamSize	Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling
2013-12-10	CCM	Correlation classification method (CCM)
2013-12-10	cloudUtil	Cloud Util Plots
2013-12-10	conics	Plot Conics
2013-12-10	corclass	Correlational Class Analysis
2013-12-10	CVST	Fast Cross-Validation via Sequential Testing
2013-12-10	fTrading	Technical Trading Analysis
2013-12-10	fxregime	Exchange Rate Regime Analysis
2013-12-10	glmx	Generalized Linear Models Extended
2013-12-10	gsl	wrapper for the Gnu Scientific Library
2013-12-10	gsscopu	Copula Density and 2-D Hazard Estimation using Smoothing Splines
2013-12-10	hyperdirichlet	A generalization of the Dirichlet distribution
2013-12-10	iBUGS	An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
2013-12-10	lmm	Linear mixed models
2013-12-10	MixSim	Simulating Data to Study Performance of Clustering Algorithms
2013-12-10	mlegp	Maximum Likelihood Estimates of Gaussian Processes
2013-12-10	pathmox	Pathmox Approach of Segmentation Trees in Partial Least Squares Path Modeling
2013-12-10	prettyGraphs	publication-quality graphics
2013-12-10	SII	Calculate ANSI S3.5-1997 Speech Intelligibility Index
2013-12-10	sparseLTSEigen	RcppEigen back end for sparse least trimmed squares regression
2013-12-10	SPmlficmcm	Semiparametric Maximum likelihood Method for interactions gene-environment in case-mother control-mother designs
2013-12-10	tdthap	TDT tests for extended haplotypes
2013-12-09	calibrator	Bayesian calibration of complex computer codes
2013-12-09	DIME	DIME (Differential Identification using Mixture Ensemble)
2013-12-09	geoCount	Analysis and Modeling for Geostatistical Count Data
2013-12-09	vrmlgen	Generate 3D visualizations for data exploration on the web
2013-12-08	approximator	Bayesian prediction of complex computer codes
2013-12-08	discrimARTs	Discrimination of Alternative Reproductive Tactics (ARTs)
2013-12-08	partitions	Additive partitions of integers
2013-12-08	plspm	Tools for Partial Least Squares Path Modeling (PLS-PM)
2013-12-08	zic	Bayesian Inference for Zero-Inflated Count Models
2013-12-07	elrm	Exact Logistic Regression via MCMC
2013-12-07	hflights	Flights that departed Houston in 2011
2013-12-07	rtfbs	R Transcription Factor Binding Site identification tool
2013-12-07	sortinghat	sortinghat
2013-12-06	assertthat	Easy pre and post assertions
2013-12-06	NADA	Nondetects And Data Analysis for environmental data
2013-12-06	NlsyLinks	Utilities and kinship information for behavior genetics and developmental research using the NLSY
2013-12-05	Brobdingnag	Very large numbers in R
2013-12-05	drsmooth	Dose-Response Modeling with Smoothing Splines
2013-12-05	DynamicDistribution	Dynamically visualized probability distributions and their moments
2013-12-05	GWAtoolbox	GWAS Quality Control
2013-12-05	hddplot	Use known groups in high-dimensional data to derive scores for plots
2013-12-05	LDExplorer	Efficient Whole-Genome LD Based Haplotpe Block Recognition
2013-12-05	MaXact	Exact max-type Cochran-Armitage trend test(CATT)
2013-12-05	multivator	A multivariate emulator
2013-12-05	ref	References for R
2013-12-05	Sample.Size	Sample size calculation
2013-12-05	snpStatsWriter	Flexible writing of snpStats objects to flat files
2013-12-04	coalescentMCMC	MCMC Algorithms for the Coalescent
2013-12-04	goft	Tests of fit for some probability distributions
2013-12-04	npmv	Nonparametric Comparison of Multivariate Samples
2013-12-04	obs.agree	An R package to assess agreement between observers
2013-12-03	ADM3	An Interpretation of the ADM method - automated detection algorithm
2013-12-03	aspect	Aspects of Multivariables
2013-12-03	ClustOfVar	Clustering of variables
2013-12-03	DEMEtics	Evaluating the genetic differentiation between populations based on Gst and D values
2013-12-03	digest	Create cryptographic hash digests of R objects
2013-12-03	ecodist	Dissimilarity-based functions for ecological analysis
2013-12-03	Interpol.T	Hourly interpolation of multiple temperature daily series
2013-12-03	iplots	iPlots - interactive graphics for R
2013-12-03	LogicReg	Logic Regression
2013-12-03	mefa	Multivariate Data Handling in Ecology and Biogeography
2013-12-03	netClass	netClass: An R Package for Network-Based Biomarker Discovery
2013-12-03	png	Read and write PNG images
2013-12-03	RCassandra	R/Cassandra interface
2013-12-03	weirs	A Hydraulics Package to Compute Open-Channel Flow over Weirs
2013-12-02	BCEA	Bayesian Cost Effectiveness Analysis
2013-12-02	dvn	Access to The Dataverse Network APIs
2013-12-02	FHtest	Tests for right and interval-censored survival data based on the Fleming-Harrington class
2013-12-02	GrassmannOptim	Grassmann Manifold Optimization
2013-12-02	mRm	An R package for conditional maximum likelihood estimation in mixed Rasch models
2013-12-02	OrdNor	Concurrent generation of ordinal and normal data with given correlation matrix and marginal distributions
2013-12-02	PoiClaClu	Classification and clustering of sequencing data based on a Poisson model
2013-12-02	smaa	Stochastic Multi-criteria Acceptability Analysis
2013-12-02	superMDS	Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011)
2013-12-01	exptest	Tests for Exponentiality
2013-12-01	hergm	Hierarchical Exponential-Family Random Graph Models with Local Dependence
2013-12-01	maptpx	MAP estimation of topic models
2013-11-30	adephylo	adephylo: exploratory analyses for the phylogenetic comparative method
2013-11-29	caper	Comparative Analyses of Phylogenetics and Evolution in R
2013-11-29	cycloids	cycloids
2013-11-29	drc	Analysis of dose-response curve data
2013-11-28	alphahull	Generalization of the convex hull of a sample of points in the plane
2013-11-28	aml	Adaptive Mixed LASSO
2013-11-28	ergm.count	Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
2013-11-28	ergm.userterms	User-specified terms for the statnet suite of packages
2013-11-28	hwde	Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci
2013-11-28	LCFdata	Data sets for package “LMERConvenienceFunctions”
2013-11-28	nodeHarvest	Node Harvest for regression and classification
2013-11-28	ROI	R Optimization Infrastructure
2013-11-28	ROI.plugin.glpk	ROI-plugin GLPK
2013-11-28	ROI.plugin.quadprog	ROI-plugin quadprog
2013-11-28	ROI.plugin.symphony	ROI-plugin symphony
2013-11-28	statnet.common	Common R Scripts and Utilities Used by the Statnet Project Software
2013-11-27	kinfit	Routines for fitting kinetic models to chemical degradation data
2013-11-27	prognosticROC	Prognostic ROC curves for evaluating the predictive capacity of a binary test
2013-11-27	RECSO	Robust and Efficient Analysis using Control function approach, of a Secondary Outcome
2013-11-27	waldwolf	Wald-Wolfowitz trend test
2013-11-26	asd	Simulations for adaptive seamless designs
2013-11-26	hda	Heteroscedastic Discriminant Analysis
2013-11-26	LICORS	Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
2013-11-26	snplist	Tools to create Gene Sets
2013-11-25	dils	Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links
2013-11-25	FastImputation	Learn from training data then quickly fill in missing data
2013-11-25	frontiles	Partial Frontier Efficiency Analysis
2013-11-25	humanFormat	Human-friendly formatting functions
2013-11-25	intamap	procedures for automated interpolation
2013-11-24	boxplotdbl	Double Box Plot for Two-Axes Correlation
2013-11-24	bpca	Biplot of Multivariate Data Based on Principal Components Analysis
2013-11-24	fdth	Frequency Distribution Tables, Histograms and Poligons
2013-11-24	HandTill2001	Multiple Class Area under ROC Curve
2013-11-23	demoKde	Kernel Density Estimation for Demonstration Purposes
2013-11-23	growthmodels	Nonlinear Growth Models
2013-11-22	BayesXsrc	R Package Distribution of the BayesX C++ Sources
2013-11-22	BMS	Bayesian Model Averaging Library
2013-11-22	DoubleCone	Test against parametric regression function
2013-11-22	GMMBoost	Likelihood-based Boosting for Generalized mixed models
2013-11-22	mixer	Random graph clustering
2013-11-22	msgpackR	A library to serialize or unserialize data in MessagePack format
2013-11-21	BSagri	Statistical methods for safety assessment in agricultural field trials
2013-11-21	dbstats	Distance-based statistics (dbstats)
2013-11-21	lestat	A package for LEarning STATistics
2013-11-21	ncf	spatial nonparametric covariance functions
2013-11-21	osmar	OpenStreetMap and R
2013-11-21	PubBias	Performs simulation study to look for publication bias, using a technique described by Ioannidis and Trikalinos; Clin Trials. 2007;4(3):245-53
2013-11-20	ade4	Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
2013-11-20	ggHorizon	An implementation of Horizon Graph
2013-11-20	hypred	Simulation of genomic data in applied genetics
2013-11-20	hysteresis	Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
2013-11-20	magic	create and investigate magic squares
2013-11-20	MsatAllele	Visualizes the scoring and binning of microsatellite fragment sizes
2013-11-20	PearsonDS	Pearson Distribution System
2013-11-20	polspline	Polynomial spline routines
2013-11-20	sensitivitymv	Sensitivity Analysis in Observational Studies
2013-11-20	vegclust	Fuzzy clustering of vegetation data
2013-11-20	witness	This package fits eyewitness data using Clark's (2003) WITNESS model
2013-11-19	bgmm	Gaussian Mixture Modeling algorithms. Including the belief-based mixture modeling
2013-11-19	devEMF	EMF graphics output device
2013-11-19	gcdnet	LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
2013-11-19	mlDNA	Machine Learning-based Differential Network Analysis of Transcriptome Data
2013-11-19	somebm	some Brownian motions simulation functions
2013-11-19	VLF	Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
2013-11-18	bigmemory	Manage massive matrices with shared memory and memory-mapped files
2013-11-18	codadiags	Markov chain Monte Carlo burn-in based on "bridge" statistics
2013-11-18	eqs2lavaan	EQS Output Conversion to lavaan Functions
2013-11-18	MetStaT	Statistical metabolomics tools
2013-11-18	rbefdata	BEFdata R package
2013-11-17	glmmML	Generalized linear models with clustering
2013-11-17	MKmisc	Miscellaneous Functions from M. Kohl
2013-11-17	RWinEdt	R Interface to WinEdt
2013-11-17	vscc	Variable selection for clustering and classification
2013-11-16	BCEs0	Bayesian models for cost-effectiveness analysis in the presence of structural zero costs
2013-11-16	contrast	A collection of contrast methods
2013-11-16	grade	Binary Grading functions for R
2013-11-16	LPCM	Local principal curve methods
2013-11-16	MiClip	A Model-based Approach to Identify Binding Sites in CLIP-Seq Data
2013-11-16	spBayes	Univariate and Multivariate Spatial-temporal Modeling
2013-11-15	avgrankoverlap	Average Rank Overlap
2013-11-15	DiceView	Plot methods for computer experiments design and surrogate
2013-11-15	DiscriMiner	Tools of the Trade for Discriminant Analysis
2013-11-15	OPI	Open Perimetry Interface
2013-11-15	PropScrRand	Propensity score methods for assigning treatment in randomized trials
2013-11-15	VizOR	Graphical visualization tools for complex observational data with focus on health sciences (VizOR)
2013-11-14	maxent	Low-memory Multinomial Logistic Regression with Support for Text Classification
2013-11-14	Rvmmin	Variable metric nonlinear function minimization with bounds constraints
2013-11-14	tester	Tests and checks characteristics of R objects
2013-11-13	diaplt	Beads Summary Plot of Ranges
2013-11-13	EMMIXskew	The EM Algorithm and Skew Mixture Distribution
2013-11-13	HaploSim	Functions to simulate haplotypes
2013-11-13	metacom	Analysis of the 'elements of metacommunity structure'
2013-11-13	mreg	Fits regression models when the outcome is partially missing
2013-11-13	MVR	Mean-Variance Regularization
2013-11-13	PAGWAS	Pathway analysis methods for genomewide association data
2013-11-13	Rambo	The Random Subgraph Model
2013-11-13	Rsymphony	Symphony in R
2013-11-13	StreamMetabolism	Stream Metabolism-A package for calculating single station metabolism from diurnal Oxygen curves
2013-11-12	cghseg	Segmentation methods for array CGH analysis
2013-11-12	colorfulVennPlot	Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data
2013-11-12	distory	Distance Between Phylogenetic Histories
2013-11-12	NSM3	An R package to accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition
2013-11-12	ramps	Bayesian Geostatistical Modeling with RAMPS
2013-11-12	robustfa	An Object Oriented Solution for Robust Factor Analysis
2013-11-12	rtf	Rich Text Format (RTF) Output
2013-11-11	clv	Cluster Validation Techniques
2013-11-11	GenKern	Functions for generating and manipulating binned kernel density estimates
2013-11-11	gWidgetsRGtk2	Toolkit implementation of gWidgets for RGtk2
2013-11-11	rGammaGamma	Gamma convolutions for methylation array background correction
2013-11-10	FusedPCA	Community Detection via Fused Principal Component Analysis
2013-11-09	aqfig	Functions to help display air quality model output and monitoring data
2013-11-09	dielectric	Defines some physical constants and dielectric functions commonly used in optics, plasmonics
2013-11-09	edrGraphicalTools	Provides tools for dimension reduction methods
2013-11-09	flexCWM	Flexible Cluster-Weighted Modeling
2013-11-09	powerMediation	Power/Sample size calculation for mediation analysis, simple linear regression, logistic regression, or longitudinal study
2013-11-08	brglm	Bias reduction in binomial-response generalized linear models
2013-11-08	circular	Circular Statistics
2013-11-08	CSS	Extract information from an html document with CSS selectors
2013-11-08	optextras	A set of tools to support optimization methods (function minimization with at most bounds and masks)
2013-11-08	quint	Qualitative Interaction Trees
2013-11-08	sampling	Survey Sampling
2013-11-08	sdcMicroGUI	Graphical user interface for package sdcMicro
2013-11-08	stima	Simultaneous Threshold Interaction Modeling Algorithm
2013-11-07	localdepth	Local Depth
2013-11-07	pcse	Panel-Corrected Standard Error Estimation in R
2013-11-07	PERregress	Regression Functions and Datasets
2013-11-07	RNiftyReg	Medical image registration using the NiftyReg library
2013-11-07	SPEI	Calculation of the Standardised Precipitation-Evapotranspiration Index
2013-11-06	ABCoptim	Implementation of Artificial Bee Colony (ABC) Optimization
2013-11-06	AGSDest	Estimation in adaptive group sequential trials
2013-11-06	CPMCGLM	Correction of the pvalue after multiple coding
2013-11-06	Hotelling	Hotelling's T-squared test and variants
2013-11-06	learningr	Data and functions to accompany the book "Learning R"
2013-11-06	Rclusterpp	Linkable C++ clustering
2013-11-06	reporttools	Generate LaTeX tables of descriptive statistics
2013-11-06	RGenetics	R packages for genetics research
2013-11-06	sparseHessianFD	Numerical estimation of sparse Hessians using ACM TOMS Algorithm 636
2013-11-05	bigtabulate	table-, tapply-, and split-like functionality for matrix and big.matrix objects
2013-11-05	comparison	Multivariate likelihood ratio calculation and evaluation
2013-11-05	demi	Differential Expression from Multiple Indicators
2013-11-05	EpiContactTrace	Epidemiological tool for contact tracing
2013-11-05	glassomix	High dimensional Mixture Graph Models selection
2013-11-05	IsoGene	Testing for monotonic relationship between gene expression and doses in a microarray experiment
2013-11-05	krm	Kernel-based Regression Models
2013-11-05	shinyAce	Ace editor bindings for Shiny
2013-11-05	sparseMVN	Multivariate normal functions for sparse covariate and precision matrices
2013-11-05	sspline	Smoothing Splines on the Sphere
2013-11-04	BenfordTests	Statistical Tests for Evaluating Conformity to Benford's Law
2013-11-04	crp.CSFP	CreditRisk+ portfolio model
2013-11-04	gskat	GEE_KM
2013-11-04	isva	Independent Surrogate Variable Analysis
2013-11-04	ktsolve	Configurable function for solving families of nonlinear equations
2013-11-04	matie	Measuring Association and Testing Independence Efficiently
2013-11-04	mvShapiroTest	Generalized Shapiro-Wilk test for multivariate normality
2013-11-04	smam	Statistical Modeling of Animal Movements
2013-11-04	someMTP	Some Multiple Testing Procedures
2013-11-04	termstrc	Zero-coupon Yield Curve Estimation
2013-11-03	kernlab	Kernel-based Machine Learning Lab
2013-11-03	MonoPoly	Functions to fit monotone polynomials
2013-11-03	pedigree	Pedigree functions
2013-11-02	BayesCR	Bayesian analysis of censored linear regression models with scale mixtures of normal (SMN) distributions
2013-11-02	prinsimp	Finding and plotting simple basis vectors for multivariate data
2013-11-02	RCPmod	Regions of common profiles modelling with mixtures-of-experts
2013-11-01	ccaPP	(Robust) canonical correlation analysis via projection pursuit
2013-11-01	PAGI	The package can identify the dysregulated KEGG pathways based on global influence from the internal effect of pathways and crosstalk between pathways
2013-11-01	rgcvpack	R Interface for GCVPACK Fortran Package
2013-10-31	ACD	Categorical data analysis with complete or missing responses
2013-10-31	CIFsmry	Weighted summary of cumulative incidence functions
2013-10-31	DDHFm	Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
2013-10-31	gllm	Generalised log-linear model
2013-10-31	lmf	Functions for estimation and inference of selection in age-structured populations
2013-10-31	MRsurv	A multiplicative-regression model for relative survival
2013-10-31	sExtinct	Calculates the historic date of extinction given a series of sighting events
2013-10-31	SpatialNP	Multivariate nonparametric methods based on spatial signs and ranks
2013-10-31	varSelectIP	Objective Bayes Model Selection
2013-10-30	mbbefd	MBBEFD distribution and exposure curve
2013-10-30	RCircos	Circos 2D Track Plot
2013-10-30	RVsharing	RVsharing
2013-10-30	SuppDists	Supplementary distributions
2013-10-29	cccd	Class Cover Catch Digraphs
2013-10-29	cluster.datasets	Cluster Analysis Data Sets
2013-10-29	gWidgets2RGtk2	Implementation of gWidgets2 for RGtk2 package
2013-10-29	gWidgets2tcltk	Toolkit implementation of gWidgets2 for tcltk package
2013-10-29	Matching	Multivariate and Propensity Score Matching with Balance Optimization
2013-10-29	strucchange	Testing, Monitoring, and Dating Structural Changes
2013-10-29	TraMineRextras	Extras for use with the TraMineR package
2013-10-28	BayesSAE	Bayesian Analysis of Small Area Estimation
2013-10-28	erboost	Nonparametric Multiple Expectile Regression via ER-Boost
2013-10-28	fingerprint	Functions to operate on binary fingerprint data
2013-10-28	IPSUR	Introduction to Probability and Statistics Using R
2013-10-27	mar1s	Multiplicative AR(1) with Seasonal Processes
2013-10-26	cgwtools	My collection of useful tools
2013-10-26	clpAPI	R Interface to C API of COIN-OR Clp
2013-10-26	testit	A simple package for testing R packages
2013-10-25	CARrampsOcl	Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
2013-10-25	DCL	Claims Reserving under the Double Chain Ladder Model
2013-10-25	dgof	Discrete Goodness-of-Fit Tests
2013-10-25	hdlm	Fitting High Dimensional Linear Models
2013-10-25	kmconfband	Kaplan-Meier Simultaneous Confidence Band for the Survivor Function
2013-10-25	SPARQL	SPARQL client
2013-10-24	BASIX	BASIX: An efficient C/C++ toolset for R
2013-10-24	fastcox	Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
2013-10-24	mcgibbsit	Warnes and Raftery's MCGibbsit MCMC diagnostic
2013-10-24	sybilEFBA	Using gene expression data to improve flux balance analysis predictions
2013-10-23	fbRanks	Association Football (Soccer) Ranking via Poisson Regression
2013-10-23	globalGSA	Global Gene-Set Analysis for Association Studies
2013-10-23	MFHD	Multivariate Functional Halfspace Depth
2013-10-23	pairwiseCI	Confidence intervals for two sample comparisons
2013-10-23	RForcecom	RForcecom provides the connection to Force.com and Salesforce.com from R
2013-10-22	ACTCD	Asymptotic Classification Theory for Cognitive Diagnosis
2013-10-22	crch	Censored Regression with Conditional Heteroscedasticity
2013-10-22	directPA	Direction Pathway Analysis
2013-10-22	HDtweedie	The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
2013-10-22	maxLik	Maximum Likelihood Estimation
2013-10-22	Rmisc	Rmisc: Ryan Miscellaneous
2013-10-22	smart	Sparse Multivariate Analysis via Rank Transformation
2013-10-22	snapshot	Gadget N-body cosmological simulation code snapshot I/O utilities
2013-10-22	sphereplot	Spherical plotting
2013-10-22	sss	Tools for importing files in the triple-s .(Standard Survey Structure) format
2013-10-22	surveydata	Tools to manipulate survey data
2013-10-21	evobiR	evobiR: evolutionary biology in R
2013-10-21	lomb	Lomb-Scargle Periodogram
2013-10-21	mQTL	Metabolomic Quantitative Trait Locus Mapping
2013-10-21	wavethresh	Wavelets statistics and transforms
2013-10-20	RRF	Regularized Random Forest
2013-10-19	ACNE	Affymetrix SNP probe-summarization using non-negative matrix factorization
2013-10-19	hdrcde	Highest density regions and conditional density estimation
2013-10-19	RIGHT	R Interactive Graphics via HTml
2013-10-18	datautils	Support functions for packages VBmix, semisupKernelPCA, and patchPlot
2013-10-18	locits	Test of stationarity and localized autocovariance
2013-10-18	RcmdrPlugin.UCA	UCA Rcmdr Plug-in
2013-10-17	aroma.cn	Copy-number analysis of large microarray data sets
2013-10-17	calmate	CalMaTe - Improved allele-specific copy number of SNP arrays for downstream segmentation
2013-10-17	knitrBootstrap	Knitr Bootstrap framework
2013-10-17	OIsurv	Survival analysis supplement to OpenIntro guide
2013-10-17	Rcell	Microscopy Based Cytometry Data Analysis Package
2013-10-17	RTConnect	Tools for analyzing sales report files of iTunes Connect
2013-10-16	DAAGxtras	Data Sets and Functions, supplementary to DAAG
2013-10-16	lxb	Fast LXB file reader
2013-10-16	NormalGamma	Normal-gamma convolution model
2013-10-16	regpro	Nonparametric Regression
2013-10-15	corrplot	Visualization of a correlation matrix
2013-10-15	cvq2	Calculate the predictive squared correlation coefficient
2013-10-15	Segmentor3IsBack	A Fast Segmentation Algorithm
2013-10-15	zoom	A spatial data visualization tool
2013-10-14	costat	Time series costationarity determination
2013-10-14	EMMAgeo	End-member modelling algorithm and supporting functions for grain-size analysis
2013-10-13	assertive	Readable check functions to ensure code integrity
2013-10-13	Correlplot	A collection of functions for graphing correlation matrices
2013-10-13	shinyRGL	Shiny Wrappers for RGL
2013-10-12	cpa	Confirmatory Path Analysis through the d-sep tests
2013-10-12	FITSio	FITS (Flexible Image Transport System) utilities
2013-10-12	mcGlobaloptim	Global optimization using Monte Carlo and Quasi Monte Carlo simulation
2013-10-12	phia	Post-Hoc Interaction Analysis
2013-10-12	rdd	Regression Discontinuity Estimation
2013-10-12	rsig	Robust Signature Selection for Survival Outcomes
2013-10-12	symbolicDA	Analysis of symbolic data
2013-10-11	GlobalDeviance	Global Deviance Permutation Tests
2013-10-11	ICS	Tools for Exploring Multivariate Data via ICS/ICA
2013-10-11	LOST	Missing morphometric data simulation and estimation
2013-10-11	MRwarping	Multiresolution time warping for functional data
2013-10-11	OptHedging	Estimation of value and hedging strategy of call and put options
2013-10-11	orsk	Converting Odds Ratio to Relative Risk in Cohort Studies with Partial Data Information
2013-10-11	RcmdrPlugin.HH	Rcmdr support for the HH package
2013-10-10	incReg	Incremental Multivariate Regression
2013-10-10	MCPAN	Multiple comparisons using normal approximation
2013-10-10	rseedcalc	Estimating the proportion of genetically modified stacked seeds in seedlots via multinomial group testing
2013-10-10	TestSurvRec	Statistical tests to compare two survival curves with recurrent events
2013-10-09	binMto	Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
2013-10-09	gProfileR	R interface to the g:Profiler toolkit
2013-10-09	popsom	Self-Organizing Maps With Population Based Convergence Criterion
2013-10-09	ScrabbleScore	Calculates Scrabble score for strings
2013-10-08	bmem	Mediation analysis with missing data using bootstrap
2013-10-08	caroline	A Collection of Database, Data Structure, Visualization, and Utility Functions for R
2013-10-08	RenextGUI	GUI for Renext
2013-10-07	censNID	censored NID samples
2013-10-07	migration.indices	Migration indices
2013-10-05	cold	cold: a package for Count Longitudinal Data
2013-10-05	DAAGbio	Data Sets and Functions, for demonstrations with expression arrays and gene sequences
2013-10-05	fdrci	Permutation-based FDR Point and Confidence Interval Estimation
2013-10-05	servr	A simple HTTP server in R
2013-10-04	ICC	Functions facilitating the estimation of the Intraclass Correlation Coefficient
2013-10-04	kitagawa	Spectral response of water wells to harmonic strain and pressure
2013-10-04	Renext	Renewal method for extreme values extrapolation
2013-10-04	TDD	Time-Domain Deconvolution of Seismometer Response
2013-10-03	daewr	Design and Analysis of Experiments with R
2013-10-03	ggmcmc	Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
2013-10-03	HEAT	Health Effects of Air Pollution and Temperature (HEAT)
2013-10-03	powerAnalysis	Power analysis in experimental design
2013-10-03	proftools	Profile Output Processing Tools for R
2013-10-03	riv	Robust instrumental variables estimator
2013-10-03	sparseBC	Sparse biclustering of transposable data
2013-10-02	SpeciesMix	Fit Mixtures of Archetype species
2013-10-01	dcmle	Hierarchical Models Made Easy with Data Cloning
2013-10-01	IsotopeR	Stable isotope analysis
2013-10-01	kulife	Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
2013-10-01	multitaper	Multitaper spectral analysis tools
2013-10-01	PsumtSim	Simulations of grouped responses relative to baseline
2013-09-30	AUC	Threshold independent performance measures for probabilistic classifiers
2013-09-30	colorspace	Color Space Manipulation
2013-09-30	dclone	Data Cloning and MCMC Tools for Maximum Likelihood Methods
2013-09-30	LCA	Localised Co-Dependency Analysis
2013-09-30	ParentOffspring	Conduct the Parent-Offspring Test Using Monomorphic SNP Markers
2013-09-30	plan	Tools for project planning
2013-09-30	topsis	TOPSIS method for multiple-criteria decision making (MCDM)
2013-09-29	coloc	Colocalisation tests of two genetic traits
2013-09-29	elliplot	Ellipse Summary Plot of Quantiles
2013-09-29	TScompare	TSdbi Comparison
2013-09-29	TSdata	TSdbi Illustration
2013-09-29	TSdbi	TSdbi (Time Series Database Interface)
2013-09-29	TSfame	TSdbi extensions for fame
2013-09-29	TSgetSymbol	TSdbi extension to connect with getSymbols
2013-09-29	TShistQuote	TSdbi extensions for get.hist.quote
2013-09-29	TSMySQL	TSdbi extensions for MySQL
2013-09-29	TSodbc	TSdbi extensions for ODBC
2013-09-29	TSPostgreSQL	TSdbi extensions for PostgreSQL
2013-09-29	TSSQLite	TSdbi extensions for SQLite
2013-09-29	TSxls	TSdbi extension to connect to spreadsheets
2013-09-29	TSzip	TSdbi extension to connect to zip files
2013-09-28	adagio	Discrete and Global Optimization Routines
2013-09-27	BAYSTAR	On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
2013-09-27	FitARMA	FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
2013-09-27	MRMR	Multivariate Regression Models for Reserving
2013-09-27	pan	Multiple imputation for multivariate panel or clustered data
2013-09-27	rDNA	R Bindings for the Discourse Network Analyzer
2013-09-27	snow	Simple Network of Workstations
2013-09-26	simecol	Simulation of ecological (and other) dynamic systems
2013-09-26	spsurvey	Spatial Survey Design and Analysis
2013-09-26	ssvd	Sparse SVD
2013-09-25	sos	Search contributed R packages, sort by package
2013-09-25	SubCultCon	Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures
2013-09-25	wgsea	Wilcoxon based gene set enrichment analysis
2013-09-24	asypow	Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
2013-09-24	diffEq	Functions from the book Solving Differential Equations in R
2013-09-24	enRich	An R package for the analysis of multiple ChIP-seq data
2013-09-24	exactRankTests	Exact Distributions for Rank and Permutation Tests
2013-09-24	isa2	The Iterative Signature Algorithm
2013-09-24	Map2NCBI	Mapping Markers to the Nearest Genomic Feature
2013-09-24	NPHMC	Sample Size Calculation for the Proportional Hazards Mixture Cure Model
2013-09-24	popReconstruct	Reconstruct population counts, fertility, mortality and migration rates of human populations of the recent past
2013-09-24	tframePlus	Time Frame coding kernel extensions
2013-09-23	adehabitatMA	Tools to Deal with Raster Maps
2013-09-23	animalTrack	Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data
2013-09-23	EffectsRelBaseline	Test changes of a grouped response relative to baseline
2013-09-23	GUIDE	GUI for DErivatives in R
2013-09-23	hzar	Hybrid Zone Analysis using R
2013-09-23	LSMonteCarlo	American options pricing with Least Squares Monte Carlo method
2013-09-23	quantreg	Quantile Regression
2013-09-23	SAMURAI	Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations
2013-09-23	ZeligChoice	Zelig Choice Models
2013-09-23	ZeligGAM	General Additive Models for Zelig
2013-09-23	ZeligMultilevel	Multilevel Regressions for Zelig
2013-09-22	AtelieR	A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests
2013-09-22	bootfs	Use multiple feature selection algorithms to derive robust feature sets for two or multiclass classification problems
2013-09-22	lazy	Lazy Learning for Local Regression
2013-09-22	MVPARTwrap	MVPARTwrap: Additional features for package mvpart
2013-09-22	R2admb	ADMB to R interface functions
2013-09-21	boss	Boosted One-Step Statistics: Fast and accurate approximations for GLM, GEE and Mixed models for use in GWAS
2013-09-21	cocor	Comparing correlations
2013-09-21	cocron	Statistical comparisons of two or more alpha coefficients
2013-09-21	CrypticIBDcheck	Identifying cryptic relatedness in genetic association studies
2013-09-21	dataQualityR	Performs variable level data quality checks and generates summary statistics
2013-09-21	gmodels	Various R programming tools for model fitting
2013-09-21	LDheatmap	Graphical display of pairwise linkage disequilibria between SNPs
2013-09-21	longpower	Sample size calculations for longitudinal data
2013-09-21	phmm	Proportional Hazards Mixed-effects Model (PHMM)
2013-09-21	Zelig	Everyone's Statistical Software
2013-09-20	beeswarm	The bee swarm plot, an alternative to stripchart
2013-09-20	svapls	Surrogate variable analysis using partial least squares in a gene expression study
2013-09-20	TriMatch	Propensity Score Matching of Non-Binary Treatments
2013-09-19	Biograph	Explore life histories
2013-09-19	CNVassoc	Association analysis of CNV data
2013-09-19	fail	File Abstraction Interface Layer (FAIL) mimicking a key-value store
2013-09-19	genMOSS	Functions for the Bayesian analysis of GWAS data
2013-09-19	pheatmap	Pretty Heatmaps
2013-09-19	prLogistic	Estimation of Prevalence Ratios using Logistic Models
2013-09-19	qtlhot	Inference for QTL Hotspots
2013-09-19	zyp	Zhang + Yue-Pilon trends package
2013-09-18	Dodge	Functions for Acceptance Sampling Ideas originated by H.F. Dodge
2013-09-18	dynaTree	Dynamic trees for learning and design
2013-09-17	cgdsr	R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
2013-09-17	GABi	Framework for Generalized Subspace Pattern Mining
2013-09-16	akima	Interpolation of irregularly spaced data
2013-09-16	HMPTrees	Statistical Object Oriented Data Analysis of RDP-based Taxonomic trees from Human Microbiome Data: Modeling, Visualization, and Two-Group Comparison
2013-09-16	R4dfp	4dfp MRI Image Read and Write Routines
2013-09-16	SMCRM	Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012)
2013-09-16	speccalt	Alternative spectral clustering, with automatic estimation of k
2013-09-16	tripack	Triangulation of irregularly spaced data
2013-09-16	yhat	Interpreting Regression Effects
2013-09-15	forensim	Statistical tools for the interpretation of forensic DNA mixtures
2013-09-15	GPCSIV	GPCSIV, Generalized Principal Component of Symbolic Interval variables
2013-09-14	EILA	Efficient Inference of Local Ancestry
2013-09-14	RcmdrPlugin.qual	Rcmdr plugin for quality control course
2013-09-14	RobRex	Optimally robust influence curves for regression and scale
2013-09-14	ROptRegTS	Optimally robust estimation for regression-type models
2013-09-13	CLAG	An unsupervised non hierarchical clustering algorithm handling biological data
2013-09-13	Daim	Diagnostic accuracy of classification models
2013-09-13	distrDoc	Documentation for packages distr, distrEx, distrSim, distrTEst, distrTeach, distrMod, and distrEllipse
2013-09-13	distrEllipse	S4 classes for elliptically contoured distributions
2013-09-13	distrEx	Extensions of package distr
2013-09-13	distrRmetrics	Package distr classes for distributions from Rmetrics
2013-09-13	distrTeach	Extensions of package distr for teaching Stochastics/Statistics in secondary school
2013-09-13	distrTEst	Estimation and Testing classes based on package distr
2013-09-13	EcoTroph	EcoTroph R package
2013-09-13	ez	Easy analysis and visualization of factorial experiments
2013-09-13	labdsv	Ordination and Multivariate Analysis for Ecology
2013-09-13	rbiouml	Functions to interact with BioUML server
2013-09-13	RobAStBase	Robust Asymptotic Statistics
2013-09-13	RobLox	Optimally robust influence curves and estimators for location and scale
2013-09-13	RobLoxBioC	Infinitesimally robust estimators for preprocessing omics data
2013-09-13	ROptEst	Optimally robust estimation
2013-09-13	ROptEstOld	Optimally robust estimation - old version
2013-09-13	startupmsg	Utilities for start-up messages
2013-09-12	distrMod	Object oriented implementation of probability models
2013-09-12	distrSim	Simulation classes based on package distr
2013-09-12	logcondens.mode	Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode
2013-09-12	MLRMPA	A package for Multilinear Regression Model Population Analysis
2013-09-12	optpart	Optimal partitioning of similarity relations
2013-09-12	phalen	Phalen Algorithms and Functions
2013-09-11	pastis	Phylogenetic Assembly with Soft Taxonomic Inferences
2013-09-11	RandVar	Implementation of random variables
2013-09-11	relaimpo	Relative importance of regressors in linear models
2013-09-10	calibrate	Calibration of Scatterplot and Biplot Axes
2013-09-10	FREQ	FREQ: Estimate population size from capture frequencies
2013-09-10	NEff	Calculating effective sizes based on known demographic parameters of a population
2013-09-10	psidR	Build panel data sets from PSID raw data
2013-09-10	PSM	Non-Linear Mixed-Effects modelling using Stochastic Differential Equations
2013-09-10	rgrs	Functions to make R usage in social sciences easier (in french)
2013-09-10	rknn	Random KNN Classification and Regression
2013-09-10	smdata	Data to accompany Smithson & Merkle, 2013
2013-09-10	splusTimeSeries	Time Series from S-PLUS
2013-09-09	camel	Calibrated Machine Learning
2013-09-09	DendSer	Dendrogram seriation: ordering for visualisation
2013-09-09	onemap	Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
2013-09-08	RMongo	MongoDB Client for R
2013-09-08	ttwa	Travel To Work Area
2013-09-07	ALSCPC	Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form
2013-09-05	CommonTrend	Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics
2013-09-05	excel.link	Convenient way to work with data in Microsoft Excel
2013-09-05	G1DBN	A package performing Dynamic Bayesian Network inference
2013-09-05	openNLPdata	Apache OpenNLP Jars and Basic English Language Models
2013-09-05	survPresmooth	Presmoothed Estimation in Survival Analysis
2013-09-04	kelvin	Calculate solutions to the Kelvin differential equation using Bessel functions
2013-09-04	laser	Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
2013-09-04	pavo	Perceptual analysis, visualization and organization of spectral color data in R
2013-09-04	PF	Prevented fraction
2013-09-04	rio	A Swiss-army knife for data file I/O
2013-09-04	tiff	Read and write TIFF images
2013-09-04	uuid	Tools for generating and handling of UUIDs
2013-09-03	BCDating	Business Cycle Dating and Plotting Tools - BCDating
2013-09-03	expoTree	Calculate density dependent likelihood of a phylogenetic tree
2013-09-03	genetics	Population Genetics
2013-09-03	inlinedocs	Convert inline comments to documentation
2013-09-03	RFGLS	Rapid Feasible Generalized Least Squares
2013-09-03	sparc	Semiparametric Generalized Linear Models
2013-09-02	ibr	Iterative Bias Reduction
2013-09-02	modeltools	Tools and Classes for Statistical Models
2013-09-02	scrime	Analysis of High-Dimensional Categorical Data such as SNP Data
2013-09-02	tabplotd3	Tabplotd3, interactive inspection of large data
2013-09-01	classInt	Choose univariate class intervals
2013-08-31	Grid2Polygons	Convert Spatial Grids to Polygons
2013-08-31	hisemi	Hierarchical Semiparametric Regression of Test Statistics
2013-08-31	lrmest	Different types of estimators to deal with multicollinearity
2013-08-31	minpack.lm	R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK, plus support for bounds
2013-08-31	varComp	Variance component models
2013-08-30	fExpressCertificates	fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
2013-08-30	genMOSSplus	Application of MOSS algorithm to genome-wide association study (GWAS)
2013-08-30	getopt	C-like getopt behavior
2013-08-29	automap	Automatic interpolation package
2013-08-29	rrcovHD	Robust multivariate Methods for High Dimensional Data
2013-08-29	rrcovNA	Scalable Robust Estimators with High Breakdown Point for Incomplete Data
2013-08-28	mmap	Map Pages of Memory
2013-08-28	rainbow	Rainbow plots, bagplots and boxplots for functional data
2013-08-28	RStorm	Simulate and Develop Streaming Processing in [R]
2013-08-27	EMVC	Entropy Minimization over Variable Clusters (EMVC)
2013-08-27	soil.spec	Soil spectral file conversion, data exploration and regression functions
2013-08-27	VaRES	Computes value at risk and expected shortfall for over 100 parametric distributions
2013-08-26	dbEmpLikeGOF	Goodness-of-fit and two sample comparison tests using sample entropy
2013-08-26	epoc	EPoC (Endogenous Perturbation analysis of Cancer)
2013-08-26	rehh	Searching for footprints of selection using Haplotype Homozygosity based tests
2013-08-26	rrcov	Scalable Robust Estimators with High Breakdown Point
2013-08-26	SML	Statistical Machine Learning
2013-08-24	soilprofile	A package to consistently represent soil properties along a soil profile
2013-08-23	corTools	Tools for processing data after a Genome Wide Association Study
2013-08-23	muRL	Mailmerge using R, LaTeX, and the Web
2013-08-23	RcmdrPlugin.sampling	Tools for sampling in Official Statistical Surveys
2013-08-23	rtematres	The rtematres API package
2013-08-23	spaa	SPecies Association Analysis
2013-08-23	tlemix	Trimmed Maximum Likelihood Estimation
2013-08-22	fds	Functional data sets
2013-08-22	GeoXp	Interactive exploratory spatial data analysis
2013-08-22	HSROC	Joint meta-analysis of diagnostic test sensitivity and specificity with or without a gold standard reference test
2013-08-22	Rjpstatdb	R interface of the Gateway to Advanced and User-friendly Statistics Service
2013-08-22	smss	Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences"
2013-08-22	ssfit	Fitting of parametric models using summary statistics
2013-08-22	StatDA	Statistical Analysis for Environmental Data
2013-08-21	intamapInteractive	procedures for automated interpolation - methods only to be used interactively, not included in intamap package
2013-08-21	kmlcov	Clustering longitudinal data using the likelihood as a metric of distance
2013-08-21	RepeatedHighDim	Global tests for expression data of high-dimensional sets of molecular features
2013-08-21	Rserve	Binary R server
2013-08-21	SOLOMON	Parentage analysis
2013-08-21	specificity	Specificity of personality trait-outcome (or trait-trait) associations
2013-08-21	spls	Sparse Partial Least Squares (SPLS) Regression and Classification
2013-08-20	CellularAutomaton	One-Dimensional Cellular Automata
2013-08-20	censReg	Censored Regression (Tobit) Models
2013-08-20	frontier	Stochastic Frontier Analysis
2013-08-20	ggparallel	Variations of Parallel Coordinate Plots for Categorical Data
2013-08-20	Newdistns	Computes pdf, cdf, quantile and random numbers for 19 general families of distributions
2013-08-20	phenmod	Auxiliary functions for phenological data processing, modelling and result handling
2013-08-20	Rpoppler	PDF tools based on Poppler
2013-08-20	SEchart	SEchart
2013-08-20	WDI	World Development Indicators (World Bank)
2013-08-19	BRugs	R interface to the OpenBUGS MCMC software
2013-08-19	protiq	Protein (identification and) quantification based on peptide evidence
2013-08-19	R2BayesX	Estimate Structured Additive Regression Models with BayesX
2013-08-19	SeqGrapheR	Simple GUI for graph based visualization of cluster of DNA sequence reads
2013-08-19	SynchWave	Synchrosqueezed Wavelet Transform
2013-08-19	vwr	Useful functions for visual word recognition research
2013-08-17	bitops	Bitwise Operations
2013-08-17	condGEE	Parameter estimation in conditional GEE for recurrent event gap times
2013-08-17	glinternet	Learning interactions via hierarchical group-lasso regularization
2013-08-17	mda	Mixture and flexible discriminant analysis
2013-08-17	mixsmsn	Fitting finite mixture of scale mixture of skew-normal distributions
2013-08-17	profileModel	Tools for profiling inference functions for various model classes
2013-08-16	adabag	Applies multiclass AdaBoost.M1, AdaBoost-SAMME and Bagging
2013-08-16	blm	Binomial linear and linear-expit regression
2013-08-16	CNVassocData	Example data sets for association analysis of CNV data
2013-08-16	JOP	Joint Optimization Plot
2013-08-16	PCS	Calculate the probability of correct selection (PCS)
2013-08-16	relaxnet	Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007)
2013-08-16	SEMID	Identifiability of linear structural equation models
2013-08-15	bvpSolve	Solvers for boundary value problems of ordinary differential equations
2013-08-15	conjoint	Conjoint analysis package
2013-08-15	latticeExtra	Extra Graphical Utilities Based on Lattice
2013-08-14	complex.surv.dat.sim	Simulation of complex survival data
2013-08-14	covTest	Computes covariance test for adaptive linear modelling
2013-08-14	IntLik	Numerical Integration for Integrated Likelihood
2013-08-13	autopls	pls regression with backward selection of predictors
2013-08-13	ddepn	Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data
2013-08-13	denpro	Visualization of multivariate, functions, sets, and data
2013-08-13	EasyHTMLReport	EasyHTMLReport
2013-08-13	ES	Edge Selection
2013-08-13	PAS	Polygenic Analysis System (PAS)
2013-08-13	RFinanceYJ	RFinanceYJ
2013-08-12	Rarity	Calculation of rarity indices for species and assemblages of species
2013-08-12	rLindo	R Interface to LINDO API
2013-08-12	SpatioTemporal	Spatio-Temporal Model Estimation
2013-08-10	bmp	Read Windows Bitmap (BMP) images
2013-08-10	celestial	Collection of common astronomical conversion routines
2013-08-10	PK	Basic Non-Compartmental Pharmacokinetics
2013-08-10	pls	Partial Least Squares and Principal Component regression
2013-08-10	rzmq	R binding for zmq (http://www.zeromq.org/)
2013-08-09	inline	Inline C, C++, Fortran function calls from R
2013-08-09	mallet	A wrapper around the Java machine learning tool MALLET
2013-08-09	NPMLEcmprsk	Non-parametric Maximum-Likelihood Estimation for Competing-Risks Data
2013-08-08	DMwR	Functions and data for "Data Mining with R"
2013-08-08	gb	Generalize Lambda Distribution and Generalized Bootstrapping
2013-08-08	gRim	Graphical Interaction Models
2013-08-08	miRada	MicroRNA Microarray Data Analysis
2013-08-08	SPMS	Sub-Pathway Mining Software
2013-08-08	spt	Sierpinski Pedal Triangle
2013-08-07	DiscreteWeibull	Discrete Weibull distribution
2013-08-07	IASD	Model selection for index of asymmetry distribution
2013-08-07	memuse	Estimate the memory usage of dense, in-core, numeric objects
2013-08-06	dupiR	Bayesian inference from count data using discrete uniform priors
2013-08-06	fanc	Penalized likelihood factor analysis via nonconvex penalty
2013-08-05	coarseDataTools	A collection of functions to help with analysis of coarsely observed data
2013-08-04	CompLognormal	Functions for actuarial scientists
2013-08-04	DierckxSpline	R companion to "Curve and Surface Fitting with Splines"
2013-08-04	lmeSplines	Add smoothing spline modelling capability to nlme
2013-08-04	nlmeU	Datasets and utility functions enhancing functionality of nlme package
2013-08-03	tipom	Automated measure-based classification for flint tools
2013-08-03	visualize	Graph Probability Distributions with User Supplied Parameters and Stats
2013-08-02	AMGET	Post-processing tool for ADAPT 5
2013-08-02	dfcrm	Dose-finding by the continual reassessment method
2013-08-02	ltsbase	Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method
2013-08-02	RSclient	Client for Rserve
2013-08-02	sme	Smoothing-splines Mixed-effects Models
2013-08-02	timesboot	Bootstrap computations for time series objects
2013-08-01	BNPdensity	Ferguson-Klass type algorithm for posterior normalized random measures
2013-08-01	compactr	Creates empty plots with compact axis notation
2013-08-01	nricens	NRI for risk prediction models with time to event and binary response data
2013-08-01	rbmn	Handling Linear Gaussian Bayesian Networks
2013-07-31	acopula	Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas
2013-07-31	FNN	Fast Nearest Neighbor Search Algorithms and Applications
2013-07-31	gPCA	Batch Effect Detection via Guided Principal Components Analysis
2013-07-31	needy	needy
2013-07-31	recluster	Ordination methods for the analysis of beta-diversity indices
2013-07-31	SparseGrid	Sparse grid integration in R
2013-07-30	COBRA	Nonlinear Aggregation of Predictors
2013-07-30	epr	Easy polynomial regression
2013-07-30	Lambda4	Collection of Internal Consistency Reliability Coefficients
2013-07-29	bibtex	bibtex parser
2013-07-29	gcmr	Gaussian Copula Marginal Regression
2013-07-29	pathdiagram	Basic functions for drawing path diagrams
2013-07-29	robeth	R functions for robust statistics
2013-07-29	SimultAnR	Correspondence and Simultaneous Analysis
2013-07-29	widenet	Penalized Regression with Polynomial Basis Expansions
2013-07-28	MPINet	The package can implement the network-based metabolite pathway identification of pathways
2013-07-28	pwt	Penn World Table (Versions 5.6, 6.x, 7.x)
2013-07-28	pwt8	Penn World Table (Version 8.0)
2013-07-28	Rz	GUI Tool for Data Management like SPSS or Stata
2013-07-27	eigenprcomp	Computes confidence intervals for principal components
2013-07-26	crawl	Fit continuous-time correlated random walk models to animal movement data
2013-07-26	ebdbNet	Empirical Bayes Estimation of Dynamic Bayesian Networks
2013-07-26	Myrrixjars	External jars required for package Myrrix
2013-07-26	Nippon	Japanese utility functions and data
2013-07-26	RInSp	R Individual Specialization (RInSp) package
2013-07-25	AnDE	An extended Bayesian Learning Technique developed by Dr. Geoff Webb
2013-07-25	gains	Gains Table Package
2013-07-24	hint	Tools for hypothesis testing based on Hypergeometric Intersection distributions
2013-07-24	jtrans	Johnson transformation for normality
2013-07-24	RGCCA	RGCCA and Sparse GCCA for multi-block data analysis
2013-07-24	RSAGA	SAGA Geoprocessing and Terrain Analysis in R
2013-07-24	RxCEcolInf	R x C Ecological Inference With Optional Incorporation of Survey Information
2013-07-24	tgram	Functions to compute and plot tracheidograms
2013-07-23	ABCp2	Approximate Bayesian Computational model for estimating P2
2013-07-23	diptest	Hartigan's dip test statistic for unimodality - corrected code
2013-07-23	directlabels	Direct labels for multicolor plots in lattice or ggplot2
2013-07-23	neuroblastoma	Neuroblastoma copy number profiles
2013-07-23	PatternClass	Class-focused pattern metric comparisons using simulation
2013-07-23	usdm	Uncertainty analysis for species distribution models
2013-07-22	anametrix	Bidirectional connector to Anametrix API
2013-07-22	Exact	Unconditional Exact Test
2013-07-22	somplot	Visualisation of hexagonal Kohonen maps
2013-07-22	vars	VAR Modelling
2013-07-22	wordmatch	Matches words in one file with words in another file
2013-07-21	mondate	Keep track of dates in terms of months
2013-07-21	suRtex	LaTeX descriptive statistic reporting for survey data
2013-07-19	abf2	Load Axon ABF2 files (currently only in gap-free recording mode)
2013-07-19	BsMD	Bayes Screening and Model Discrimination
2013-07-19	multisensi	Multivariate Sensitivity Analysis
2013-07-18	bride	Brier score decomposition of probabilistic forecasts for binary events
2013-07-18	Causata	Analysis utilities for binary classification and Causata users
2013-07-18	DescribeDisplay	R interface to DescribeDisplay (GGobi plugin)
2013-07-18	FactoClass	Combination of Factorial Methods and Cluster Analysis
2013-07-18	rsem	Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
2013-07-17	maRketSim	Market simulator for R
2013-07-16	LogrankA	Logrank Test for Aggregated Survival Data
2013-07-16	QSARdata	Quantitative Structure Activity Relationship (QSAR) Data Sets
2013-07-15	fuzzyRankTests	Fuzzy Rank Tests and Confidence Intervals
2013-07-15	rexpokit	R wrappers for EXPOKIT; other matrix functions
2013-07-15	straweib	Stratified Weibull Regression Model
2013-07-14	gpk	100 Data Sets for Statistics Education
2013-07-14	oblique.tree	Oblique Trees for Classification Data
2013-07-13	kza	Kolmogorov-Zurbenko Adaptive Filters
2013-07-13	phyloclim	Integrating Phylogenetics and Climatic Niche Modeling
2013-07-12	desire	Desirability functions in R
2013-07-12	icaOcularCorrection	Independent Components Analysis (ICA) based artifact correction
2013-07-12	LS2W	Locally stationary two-dimensional wavelet process estimation scheme
2013-07-12	PROFANCY	The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways
2013-07-11	DistatisR	DiSTATIS Three Way Metric Multidimensional Scaling
2013-07-11	munsell	Munsell colour system
2013-07-11	optBiomarker	Estimation of optimal number of biomarkers for two-group microarray based classifications at a given error tolerance level for various classification rules
2013-07-11	sig	Print function signatures
2013-07-11	splus2R	Supplemental S-PLUS functionality in R
2013-07-11	switchnpreg	Switching nonparametric regression models for a single curve and functional data
2013-07-10	LoopAnalyst	A collection of tools to conduct Levins' Loop Analysis
2013-07-10	MDM	Multinomial Diversity Model
2013-07-10	multicool	Permutations of multisets in cool-lex order
2013-07-10	tripEstimation	Metropolis sampler and supporting functions for estimating animal movement from archival tags and satellite fixes
2013-07-09	backtest	Exploring portfolio-based conjectures about financial instruments
2013-07-09	EnvNicheR	Environmental niche
2013-07-09	ipfp	Fast implementation of the iterative proportional fitting procedure in C
2013-07-09	portfolio	Analysing equity portfolios
2013-07-09	portfolioSim	Framework for simulating equity portfolio strategies
2013-07-09	twitteR	R based Twitter client
2013-07-09	VDA	VDA
2013-07-08	coxphf	Cox regression with Firth's penalized likelihood
2013-07-08	fast	Implementation of the Fourier Amplitude Sensitivity Test (FAST)
2013-07-08	Laterality	Functions to calculate common laterality statistics in primatology
2013-07-06	sGPCA	Sparse Generalized Principal Component Analysis
2013-07-06	smoothie	Two-dimensional Field Smoothing
2013-07-05	bgeva	Binary Generalized Extreme Value Additive Models
2013-07-05	clusthaplo	Clustering of haplotypes
2013-07-05	EDR	Estimation of the effective dimension reduction (EDR) space
2013-07-05	MADAM	This package provides some basic methods for meta-analysis
2013-07-04	ExactCIdiff	Inductive Confidence Intervals for the difference between two proportions
2013-07-04	LDcorSV	Linkage disequilibrium corrected by the structure and the relatedness
2013-07-03	abundant	Abundant regression and high-dimensional principal fitted components
2013-07-03	editrules	R package for parsing, applying, and manipulating data cleaning rules
2013-07-03	gamlss.util	GAMLSS Utilities
2013-07-03	gsalib	Utility functions for GATK
2013-07-03	QZ	Generalized Eigenvalues and QZ Decomposition
2013-07-03	SNPtools	Accessing, subsetting and plotting mouse SNPs
2013-07-03	splm	Econometric Models for Spatial Panel Data
2013-07-02	clusterGenomics	Identifying clusters in genomics data by recursive partitioning
2013-07-02	deTestSet	Testset for differential equations
2013-07-02	flexclust	Flexible Cluster Algorithms
2013-07-02	retimes	Reaction Time Analysis
2013-07-01	DTK	Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
2013-07-01	pathClass	Classification using biological pathways as prior knowledge
2013-06-30	AlleleRetain	Allele Retention, Inbreeding, and Demography
2013-06-29	sjdbc	JDBC Driver Interface
2013-06-29	tibbrConnector	R interface to tibbr
2013-06-28	CaDENCE	Conditional Density Estimation Network Construction and Evaluation
2013-06-28	FField	Force field simulation for a set of points
2013-06-28	FisherEM	The Fisher-EM algorithm
2013-06-28	loglognorm	Double log normal distribution functions
2013-06-28	MatchIt	MatchIt: Nonparametric Preprocessing for Parametric Casual Inference
2013-06-28	r2dRue	2d Rain Use Efficience model
2013-06-28	rgenoud	R version of GENetic Optimization Using Derivatives
2013-06-27	b6e6rl	Adaptive differential evolution, b6e6rl variant
2013-06-27	itree	Tools for classification and regression trees, with an emphasis on interpretability
2013-06-27	MAMSE	Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights
2013-06-27	ParDNAcopy	parallel implementation of the "segment" function of package "DNAcopy"
2013-06-27	PCICt	Implementation of POSIXct work-alike for 365 and 360 day calendars
2013-06-26	CoxRidge	Cox models with dynamic ridge penalties
2013-06-26	distillery	Method Functions for Confidence Intervals and to Distill Information from an Object
2013-06-26	JudgeIt	JudgeIt: A Program for Evaluating Electoral Systems and Redistricting Plans
2013-06-26	logistf	Firth's bias reduced logistic regression
2013-06-26	rv	Simulation-based random variable objects
2013-06-26	SPOT	Sequential Parameter Optimization
2013-06-25	LICurvature	Sensitivity Analysis for Case Weight in Normal Linear Regression
2013-06-24	fArma	ARMA Time Series Modelling
2013-06-24	fAsianOptions	EBM and Asian Option Valuation
2013-06-24	fNonlinear	Nonlinear and Chaotic Time Series Modelling
2013-06-24	fOptions	Basics of Option Valuation
2013-06-24	fUnitRoots	Trends and Unit Roots
2013-06-24	tsModel	Time Series Modeling for Air Pollution and Health
2013-06-23	crrSC	Competing risks regression for Stratified and Clustered data
2013-06-21	ArrayBin	Binarization of numeric data arrays
2013-06-21	cfa	Analysis of configuration frequencies (CFA)
2013-06-20	CNprep	pre-process DNA copy number (CN) data for detection of CN events
2013-06-20	XML	Tools for parsing and generating XML within R and S-Plus
2013-06-19	FRAPO	Financial Risk Modelling and Portfolio Optimisation with R
2013-06-19	gwrr	Fits geographically weighted regression models with diagnostic tools
2013-06-19	Mcomp	Data from the M-competitions
2013-06-19	MConjoint	Conjoint Analysis through Averaging of Multiple Analyses
2013-06-19	MethComp	Functions for analysis of agreement in method comparison studies
2013-06-19	RSiena	Siena - Simulation Investigation for Empirical Network Analysis
2013-06-19	SmithWilsonYieldCurve	Smith-Wilson Yield Curve Construction
2013-06-18	aods3	Analysis of Overdispersed Data using S3 methods
2013-06-18	glmlep	Fit GLM with LEP-based penalized maximum likelihood
2013-06-18	gsarima	Two functions for Generalized SARIMA time series simulation
2013-06-18	rsgcc	Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data
2013-06-18	ZeBook	ZeBook Working with dynamic models for agriculture and environment
2013-06-17	Bolstad	Bolstad functions
2013-06-17	Bolstad2	Bolstad functions
2013-06-17	MCPerm	A Monte Carlo permutation method for multiple test correlation
2013-06-17	twiddler	Interactive manipulation of R expressions
2013-06-16	CompQuadForm	Distribution function of quadratic forms in normal variables
2013-06-16	JointRegBC	Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
2013-06-16	nsga2R	Elitist Non-dominated Sorting Genetic Algorithm based on R
2013-06-15	MExPosition	Multi-table ExPosition
2013-06-14	doMPI	Foreach parallel adaptor for the Rmpi package
2013-06-14	miscF	Miscellaneous Functions
2013-06-14	ordPens	Selection and/or Smoothing of Ordinal Predictors
2013-06-13	depthTools	Depth Tools Package
2013-06-13	govStatJPN	functions to get public survey data in Japan
2013-06-13	PDSCE	Positive definite sparse covariance estimators
2013-06-13	RcmdrPlugin.depthTools	R commander Depth Tools Plug-In
2013-06-12	candisc	Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
2013-06-12	cobs99	Constrained B-splines – outdated 1999 version
2013-06-12	ReacTran	Reactive transport modelling in 1D, 2D and 3D
2013-06-12	smoothSurv	Survival Regression with Smoothed Error Distribution
2013-06-12	SoDA	Functions and Examples for "Software for Data Analysis"
2013-06-12	stabledist	Stable Distribution Functions
2013-06-11	ISLR	Data for An Introduction to Statistical Learning with Applications in R
2013-06-11	MRCE	Multivariate regression with covariance estimation
2013-06-11	SIMMS	Subnetwork Integration for Multi-Modal Signatures
2013-06-11	tbdiag	Functions for tuberculosis diagnostics research
2013-06-10	cabootcrs	Bootstrap Confidence Regions for Correspondence Analysis
2013-06-10	covLCA	Latent Class Models with Covariate Effects on Underlying and Measured Variables
2013-06-10	sparktex	Generate LaTeX sparklines in R
2013-06-09	MNP	R Package for Fitting the Multinomial Probit Model
2013-06-08	lshorth	The Length of the Shorth
2013-06-08	pbs	Periodic B Splines
2013-06-07	GWAF	Genome-wide association/interaction analysis and rare variant analysis with family data
2013-06-06	IUPS	Incorporating Uncertainties in Propensity Scores
2013-06-06	LVMMCOR	A Latent Variable Model for Mixed Continuous and Ordinal Responses
2013-06-06	urca	Unit root and cointegration tests for time series data
2013-06-05	batch	Batching Routines in Parallel and Passing Command-Line Arguments to R
2013-06-04	FGalgorithm	Flury and Gautschi algorithms
2013-06-04	mopsocd	MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
2013-06-04	NPMVCP	Nonparametric Multivariate Change Point Model
2013-06-04	RfmriVC	Varying stimulus coefficient fMRI models in R
2013-06-04	RSADBE	Data related to the book "R Statistical Application Development by Example"
2013-06-04	SCEPtER	Stellar CharactEristics Pisa Estimation gRid
2013-06-04	SCEPtERextras	Additional grids for SCEPtER
2013-06-04	skatMeta	Efficient meta analysis for the SKAT test
2013-06-03	ahaz	Regularization for semiparametric additive hazards regression
2013-06-03	l2boost	l2boost - Friedman's boosting algorithm for regularized linear regression
2013-06-03	nlts	(non)linear time series analysis
2013-06-03	RobustRankAggreg	Methods for robust rank aggregation
2013-06-03	TrialSize	R functions in Chapter 3,4,6,7,9,10,11,12,14,15
2013-05-31	KoNLP	Korean NLP Package
2013-05-31	protoclass	Interpretable classification with prototypes
2013-05-31	Simile	Interact with Simile models
2013-05-30	metamisc	Diagnostic and prognostic meta analysis (metamisc)
2013-05-29	branchLars	Cost-efficient Variable Selection
2013-05-29	OneTwoSamples	Deal with one and two (normal) samples
2013-05-28	CoinMinD	Simultaneous Confidence Interval for Multinomial Proportion
2013-05-28	DTMCPack	Suite of functions related to discrete-time discrete-state Markov Chains
2013-05-28	fitTetra	fitTetra is an R package for assigning tetraploid genotype scores
2013-05-28	RVtests	Rare Variant Tests
2013-05-27	compareODM	comparison of medical forms in CDISC ODM format
2013-05-27	eba	Elimination-by-Aspects (EBA) Models
2013-05-27	Tides	Tides
2013-05-27	timeROC	Time-dependent ROC curve and AUC for censored survival data
2013-05-26	ggROC	package for roc curve plot with ggplot2
2013-05-26	McSpatial	Nonparametric spatial data analysis
2013-05-25	profdpm	Profile Dirichlet Process Mixtures
2013-05-25	SphericalCubature	Numerical integration over spheres and balls in n-dimensions; multivariate polar coordinates
2013-05-24	BSquare	Bayesian Simultaneous Quantile Regression
2013-05-24	lbiassurv	Length-biased correction to survival curve estimation
2013-05-24	tlnise	Two-level normal independent sampling estimation
2013-05-23	Haplin	Analyzing case-parent triad and/or case-control data with SNP haplotypes
2013-05-23	InferenceSMR	Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival
2013-05-23	SODC	Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC)
2013-05-22	cyphid	Cycle and Phase Identification for mastication data
2013-05-22	parallelize.dynamic	Automate parallelization of function calls by means of dynamic code analysis
2013-05-22	trueskill	Implementation the TrueSkill algorithm in R
2013-05-21	fastICA	FastICA Algorithms to perform ICA and Projection Pursuit
2013-05-21	rPlant	R interface to the iPlant Discovery Environment
2013-05-21	SetMethods	SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences"
2013-05-20	Comp2ROC	Compare two ROC curves that intersect
2013-05-20	pom	POM - Patch Occupancy Models
2013-05-19	pnmtrem	Probit-Normal Marginalized Transition Random Effects Models
2013-05-19	probsvm	probsvm: Class probability estimation for Support Vector Machines
2013-05-18	CfEstimateQuantiles	Estimate quantiles using any order Cornish-Fisher expansion
2013-05-18	SMFI5	R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering'
2013-05-17	CDLasso	Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
2013-05-16	biglm	bounded memory linear and generalized linear models
2013-05-16	chillR	Statistical methods for phenology analysis in temperate fruit trees
2013-05-16	grnn	General regression neural network
2013-05-16	PurBayes	Bayesian Estimation of Tumor Purity and Clonality
2013-05-16	ROCR	Visualizing the performance of scoring classifiers
2013-05-15	ABCExtremes	ABC Extremes
2013-05-15	Nozzle.R1	Nozzle Reports
2013-05-15	RDSTK	An R wrapper for the Data Science Toolkit API
2013-05-14	dsample	Discretization-based Direct Random Sample Generation
2013-05-14	SLHD	Maximin-Distance (Sliced) Latin Hypercube Designs
2013-05-14	sos4R	An R client for the OGC Sensor Observation Service
2013-05-14	Tinflex	Tinflex - Universal non-uniform random number generator
2013-05-13	csSAM	csSAM - cell-specific Significance Analysis of Microarrays
2013-05-13	hgam	High-dimensional Additive Modelling
2013-05-13	OpenMPController	Control number of OpenMP threads dynamically
2013-05-13	tseries	Time series analysis and computational finance
2013-05-12	coefplot	Plots Coefficients from Fitted Models
2013-05-11	ergmharris	Local Health Department network data set
2013-05-10	ArDec	Time series autoregressive-based decomposition
2013-05-10	covRobust	Robust Covariance Estimation via Nearest Neighbor Cleaning
2013-05-10	CoxBoost	Cox models by likelihood based boosting for a single survival endpoint or competing risks
2013-05-10	GAMBoost	Generalized linear and additive models by likelihood based boosting
2013-05-10	gbm	Generalized Boosted Regression Models
2013-05-10	multilevelPSA	Multilevel Propensity Score Analysis
2013-05-10	RcppProgress	An interruptible progress bar with OpenMP support for c++ in R packages
2013-05-09	gputools	A few GPU enabled functions
2013-05-09	HMP	Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
2013-05-09	NHEMOtree	Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification
2013-05-09	timeline	Timelines for a Grammar of Graphics
2013-05-09	wpp2010	World Population Prospects 2010
2013-05-08	eventstudies	Event study and extreme event analysis
2013-05-08	intergraph	Coercion routines for network data objects in R
2013-05-08	lisrelToR	Import output from LISREL into R
2013-05-08	rapport	A report templating system
2013-05-07	CircNNTSR	CircNNTSR: An R package for the statistical analysis of circular data using nonnegative trigonometric sums (NNTS) models
2013-05-07	corrsieve	CorrSieve
2013-05-07	cshapes	CShapes Dataset and Utilities
2013-05-07	ExpDes	Experimental Designs package
2013-05-07	ExpDes.pt	Pacote Experimental Designs (Portuguese)
2013-05-07	InteractiveIGraph	interactive network analysis and visualization
2013-05-07	pnn	Probabilistic neural networks
2013-05-06	bdoc	Bayesian Discrete Ordered Classification of DNA Barcodes
2013-05-06	GibbsACOV	Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
2013-05-06	simex	SIMEX- and MCSIMEX-Algorithm for measurement error models
2013-05-04	gsbDesign	Group Sequential Bayes Design
2013-05-04	HydroMe	R codes for estimating water retention and infiltration model parameters using experimental data
2013-05-03	bnpmr	Bayesian monotonic nonparametric regression
2013-05-03	diffdepprop	Calculates Confidence Intervals for two Dependent Proportions
2013-05-03	iteRates	Parametric rate comparison
2013-05-03	mixsep	Forensic Genetics DNA Mixture Separation
2013-05-02	RAP	Reversal Association Pattern
2013-05-02	SDBP	Calculate the third-order accurate Unbiased P-values via Speedy double bootstrap method
2013-05-02	SNPMClust	A bivariate Gaussian genotype clustering and calling algorithm for Illumina microarrays
2013-05-02	spcosa	Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata
2013-05-02	vardiag	A package for variogram diagnostics
2013-05-01	downloader	A package for downloading files over http and https
2013-05-01	fGarch	Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
2013-05-01	MCMCpack	Markov chain Monte Carlo (MCMC) Package
2013-05-01	networksis	Simulate bipartite graphs with fixed marginals through sequential importance sampling
2013-05-01	RnavGraphImageData	Some image data used in the RnavGraph package demos
2013-04-30	MAMA	Meta-Analysis of MicroArray
2013-04-30	PhViD	PhViD: an R package for PharmacoVigilance signal Detection
2013-04-29	tseriesChaos	Analysis of nonlinear time series
2013-04-28	whisker	{{mustache}} for R, logicless templating
2013-04-27	MicroStrategyR	MicroStrategyR Package
2013-04-26	FuzzyToolkitUoN	Type 1 Fuzzy Logic Toolkit
2013-04-26	ROAuth	R interface for OAuth
2013-04-25	dbEmpLikeNorm	Test for joint assessment of normality
2013-04-25	hsmm	Hidden Semi Markov Models
2013-04-25	princurve	Fits a Principal Curve in Arbitrary Dimension
2013-04-25	sendplot	Tool for sending interactive plots with tool-tip content
2013-04-25	SpherWave	Spherical Wavelets and SW-based Spatially Adaptive Methods
2013-04-24	DetSel	A computer program to detect markers responding to selection
2013-04-24	dirmult	Estimation in Dirichlet-Multinomial distribution
2013-04-24	lars	Least Angle Regression, Lasso and Forward Stagewise
2013-04-24	logspline	Logspline density estimation routines
2013-04-23	GENEAread	Package For Reading Binary files
2013-04-23	R2G2	Converting R CRAN outputs into Google Earth
2013-04-23	siar	Stable Isotope Analysis in R
2013-04-23	superbiclust	Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering)
2013-04-22	FFD	Freedom From Disease
2013-04-22	TESS	Fast simulation of reconstructed phylogenetic trees under time-dependent birth-death processes
2013-04-21	causalsens	Selection Bias Approach to Sensitivity Analysis for Causal Effects
2013-04-21	mgraph	Graphing map attributes and non-map variables in R
2013-04-20	cdb	Reading and Writing Constant DataBases
2013-04-20	DEoptim	Global optimization by Differential Evolution
2013-04-20	ibdreg	Regression Methods for IBD Linkage With Covariates
2013-04-20	locfit	Local Regression, Likelihood and Density Estimation
2013-04-19	boussinesq	Analytic Solutions for (ground-water) Boussinesq Equation
2013-04-19	FrF2.catlg128	Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
2013-04-19	PairedData	Paired Data Analysis
2013-04-19	repolr	Repeated measures proportional odds logistic regression
2013-04-19	spatialCovariance	Computation of spatial covariance matrices for data on rectangles
2013-04-18	glmdm	R Code for Simulation of GLMDM
2013-04-18	Iso	Functions to perform isotonic regression
2013-04-18	madsim	A Flexible Microarray Data Simulation Model
2013-04-18	palaeoSig	Significance tests for palaeoenvironmental reconstructions
2013-04-18	review	Manage Review Logs
2013-04-18	spikeslab	Prediction and variable selection using spike and slab regression
2013-04-18	threg	Threshold Regression
2013-04-17	catspec	Special models for categorical variables
2013-04-17	CheckDigit	Calculate and verify check digits
2013-04-17	decon	Deconvolution Estimation in Measurement Error Models
2013-04-17	DnE	DnE(Distribution and Equation)
2013-04-17	GAIPE	Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
2013-04-17	lpridge	Local Polynomial (Ridge) Regression
2013-04-17	mvbutils	Workspace organization, code and documentation editing, package prep and editing, etc
2013-04-17	nbpMatching	functions for non-bipartite optimal matching
2013-04-17	quadprog	Functions to solve Quadratic Programming Problems
2013-04-17	rmp	Rounded Mixture Package. Performs probability mass function estimation with Dirichlet process mixtures of rounded kernels
2013-04-17	TBSSurvival	TBS Model R package
2013-04-16	appell	Compute Appell's F1 hypergeometric function
2013-04-16	FRB	Fast and Robust Bootstrap
2013-04-16	FWDselect	Selecting variables in regression models
2013-04-16	JGL	Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
2013-04-16	pspline	Penalized Smoothing Splines
2013-04-16	qtlbim	QTL Bayesian Interval Mapping
2013-04-16	spacejam	Sparse conditional graph estimation with joint additive models
2013-04-15	peplib	Peptide Library Analysis Methods
2013-04-15	R2Cuba	Multidimensional Numerical Integration
2013-04-14	clinsig	Clinical significance functions
2013-04-13	DeducerSpatial	Deducer for spatial data analysis
2013-04-13	ellipse	Functions for drawing ellipses and ellipse-like confidence regions
2013-04-13	FBFsearch	Algorithm for searching the space of Gaussian directed acyclic graphical models through moment fractional Bayes factors
2013-04-13	ggmap	A package for spatial visualization with Google Maps and OpenStreetMap
2013-04-13	OpenStreetMap	Access to open street map raster images
2013-04-12	glmulti	Model selection and multimodel inference made easy
2013-04-12	logging	R logging package
2013-04-12	orderbook	Orderbook visualization/Charting software
2013-04-12	sideChannelAttack	Side Channel Attack
2013-04-10	clinUtiDNA	Clinical Utility of DNA Testing
2013-04-10	deseasonalize	Optimal deseasonalization for geophysical time series using AR fitting
2013-04-10	multilevel	Multilevel Functions
2013-04-10	R2OpenBUGS	Running OpenBUGS from R
2013-04-09	DAMisc	Dave Armstrong's Miscellaneous Functions
2013-04-09	phcfM	Modelling anthropogenic deforestation
2013-04-09	R1magic	Compressive Sampling: Sparse signal recovery utilities
2013-04-09	randomSurvivalForest	Random Survival Forests
2013-04-09	rbugs	Fusing R and OpenBugs and Beyond
2013-04-08	df2json	Convert a dataframe to JSON
2013-04-08	LVQTools	Learning Vector Quantization Tools
2013-04-08	peperr	Parallelised Estimation of Prediction Error
2013-04-08	survIDINRI	IDI and NRI for comparing competing risk prediction models with censored survival data
2013-04-07	bc3net	BC3NET
2013-04-07	difR	Collection of methods to detect dichotomous differential item functioning (DIF) in psychometrics
2013-04-07	popgen	Statistical and Population Genetics
2013-04-07	R2WinBUGS	Running WinBUGS and OpenBUGS from R / S-PLUS
2013-04-07	SportsAnalytics	Infrastructure for Sports Analytics
2013-04-05	concreg	Concordance regression
2013-04-05	DiceOptim	Kriging-based optimization for computer experiments
2013-04-05	persiandictionary	English to Persian dictionary
2013-04-05	PlotRegionHighlighter	Creates an envelope that surrounds a set of points plotted in a two dimensional space
2013-04-05	psbcGroup	Penalized semi-parametric Bayesian Cox (PSBC) models with shrinkage and grouping priors
2013-04-04	BaySIC	Bayesian Analysis of Significantly Mutated Genes in Cancer
2013-04-04	GeoLight	Analysis of light based geolocator data
2013-04-04	inflection	Finds the inflection point of a curve
2013-04-04	relsurv	Relative survival
2013-04-04	sae	Small Area Estimation
2013-04-04	tgp	Bayesian treed Gaussian process models
2013-04-03	lint	Tools to check R code style
2013-04-03	magma	Matrix Algebra on GPU and Multicore Architectures
2013-04-03	ncbit	retrieve and build NBCI taxonomic data
2013-04-03	noweb	Noweb system for R
2013-04-03	relevent	Relational Event Models
2013-04-03	softclassval	Soft classification performance measures
2013-04-03	softImpute	matrix completion via iterative soft-thresholded svd
2013-04-03	TimeWarp	Date calculations and manipulation
2013-04-03	trioGxE	A data smoothing approach to explore and test gene-environment interaction in case-parent trio data
2013-04-02	ConvCalendar	Converts dates between calendars
2013-04-02	ENmisc	Neuwirth miscellaneous
2013-04-02	infutil	Information Utility
2013-04-02	MLEcens	Computation of the MLE for bivariate (interval) censored data
2013-04-02	normalp	Package for exponential power distributions (EPD)
2013-04-02	SGL	Fit a GLM (or cox model) with a combination of lasso and group lasso regularization
2013-04-02	SPIn	Simulation-efficient Shortest Probability Intervals
2013-04-01	biganalytics	A library of utilities for big.matrix objects of package bigmemory
2013-04-01	gpclib	General Polygon Clipping Library for R
2013-04-01	optAUC	Optimal Combinations of Diagnostic Tests Based on AUC
2013-03-31	nice	Get or Set UNIX Niceness
2013-03-30	pbatR	P2BAT
2013-03-30	thgenetics	Genetic Rare Variants Tests
2013-03-30	TSHRC	Two Stage Hazard Rate Comparison
2013-03-29	experiment	experiment: R package for designing and analyzing randomized experiments
2013-03-29	FuncMap	Hive Plots of R Package Function Calls
2013-03-29	pooh	Partial Orders and Relations
2013-03-29	Ritc	Isothermal Titration Calorimetry (ITC) Data Analysis
2013-03-28	ICE	Iterated Conditional Expectation
2013-03-28	robustX	eXperimental Functionality for Robust Statistics
2013-03-28	sprsmdl	Sparse modeling toolkit
2013-03-27	farsi	Translate integers into persian
2013-03-27	meteogRam	Tools for plotting meteograms
2013-03-27	RPostgreSQL	R interface to the PostgreSQL database system
2013-03-27	severity	Mayo's Post-data Severity Evaluation
2013-03-26	A3	A3: Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
2013-03-26	Bayesthresh	Bayesian thresholds mixed-effects models for categorical data
2013-03-26	HI	Simulation from distributions supported by nested hyperplanes
2013-03-26	spatialkernel	Nonparameteric estimation of spatial segregation in a multivariate point process
2013-03-25	gaoptim	Genetic Algorithm optimization for real-based and permutation-based problems
2013-03-25	HAP.ROR	Recursive Organizer (ROR)
2013-03-25	hashFunction	A collection of non-cryptographic hash functions
2013-03-25	phonR	R tools for phoneticians and phonologists
2013-03-25	PMA	Penalized Multivariate Analysis
2013-03-23	crimCV	Group-Based Modelling of Longitudinal Data
2013-03-23	flsa	Path algorithm for the general Fused Lasso Signal Approximator
2013-03-23	hcc	Hidden correlation check
2013-03-22	FluOMatic	Estimation of background-subtracted fluorescence data
2013-03-22	margie	Log Marginal Likelihood of Gaussian Mixture
2013-03-22	orientlib	Support for orientation data
2013-03-21	MSeasyTkGUI	MSeasy Tcl/Tk Graphical User Interface
2013-03-20	cec2005benchmark	Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
2013-03-20	DATforDCEMRI	Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
2013-03-20	MSeasy	Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
2013-03-20	rCarto	This package builds maps with a full cartographic layout
2013-03-19	AnalyzeFMRI	Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format
2013-03-19	BiplotGUI	Interactive Biplots in R
2013-03-19	DeducerExtras	Additional dialogs and functions for Deducer
2013-03-19	QCAGUI	QCA Graphical User Interface
2013-03-19	sets	Sets, Generalized Sets, Customizable Sets and Intervals
2013-03-19	tpe	Tree preserving embedding
2013-03-18	crossdes	Construction of Crossover Designs
2013-03-18	cvplogistic	Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
2013-03-18	marqLevAlg	An algorithm for least-squares curve fitting
2013-03-18	MixtureInf	Inference for Finite Mixture Models
2013-03-18	rgr	The GSC Applied Geochemistry EDA Package
2013-03-18	SmarterPoland	A set of tools developed by the Foundation SmarterPoland.pl
2013-03-17	ensembleMOS	Ensemble Model Output Statistics
2013-03-17	TTR	Technical Trading Rules
2013-03-16	FitAR	Subset AR Model Fitting
2013-03-15	brnn	brnn (Bayesian regularization for feed-forward neural networks)
2013-03-15	fImport	Rmetrics - Economic and Financial Data Import
2013-03-15	nordklimdata1	Dataset for climate analysis with data from the Nordic region
2013-03-14	BlockMessage	Creates strings that show a text message in 8 by 8 block letters
2013-03-14	CUMP	Analyze Multivariate Phenotypes by Combining Univariate results
2013-03-14	EVER	Estimation of Variance by Efficient Replication
2013-03-14	fpp	Data for "Forecasting: principles and practice"
2013-03-14	GriegSmith	Uses Grieg-Smith method on 2 dimentional spatial data
2013-03-14	hsicCCA	Canonical Correlation Analysis based on Kernel Independence Measures
2013-03-13	bams	Breakpoint annotation model smoothing
2013-03-13	BayHap	Bayesian analysis of haplotype association using Markov Chain Monte Carlo
2013-03-13	dixon	Nearest Neighbour Contingency Table Analysis
2013-03-13	ecespa	Functions for spatial point pattern analysis
2013-03-13	miscTools	Miscellaneous Tools and Utilities
2013-03-13	mpmcorrelogram	Multivariate Partial Mantel Correlogram
2013-03-13	perry	Resampling-based prediction error estimation for regression models
2013-03-13	swamp	Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations
2013-03-13	zoeppritz	Zoeppritz Equations
2013-03-12	ber	Batch Effects Removal
2013-03-12	kappaSize	Sample Size Estimation Functions for Studies of Interobserver Agreement
2013-03-12	penDvine	Flexible Pair-Copula Estimation in D-vines using Bivariate Penalized Splines
2013-03-12	qtlmt	Tools for mapping multiple complex traits
2013-03-12	reports	An R package to assist in the workflow of writing academic articles and other reports
2013-03-11	cosso	Fit Regularized Nonparametric Regression Models Using COSSO Penalty
2013-03-11	FuzzyStatProb	Fuzzy stationary probabilities from a sequence of observations of an unknown Markov chain
2013-03-11	patchPlot	Scatterplots of image patches
2013-03-11	semisupKernelPCA	Kernel PCA projection, and semi-supervised variant
2013-03-10	biclust	BiCluster Algorithms
2013-03-10	Sleuth3	Data sets from Ramsey and Schafer's "Statistical Sleuth (3rd ed)"
2013-03-10	VisuClust	VisuClust
2013-03-08	BBMM	Brownian bridge movement model
2013-03-08	EpiEstim	EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves
2013-03-08	nls2	Non-linear regression with brute force
2013-03-08	rawFasta	Memory efficient handling of FASTA sequence files, a pure R implementation
2013-03-07	abn	Data Modelling with Additive Bayesian Networks
2013-03-07	dse	Dynamic Systems Estimation (time series package)
2013-03-07	emdbook	Ecological models and data (book support)
2013-03-07	GESTr	Gene Expression State Transformation
2013-03-07	LDOD	Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models
2013-03-06	IM	Orthogonal Moment Analysis
2013-03-05	cec2013	Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
2013-03-04	bifactorial	Inferences for bi- and trifactorial trial designs
2013-03-04	MAR1	Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
2013-03-04	nets	Network Estimation for Time Series
2013-03-04	SpatialExtremes	Modelling Spatial Extremes
2013-03-04	StandardizeText	Standardize Text
2013-03-04	survexp.fr	Relative survival, AER and SMR based on French death rates
2013-03-03	ringbuffer	Ring buffer (circular buffer) data structure
2013-03-03	YplantQMC	Plant architectural analysis with Yplant and QuasiMC
2013-03-01	AtmRay	Acoustic Traveltime Calculations for 1-D Atmospheric Models
2013-03-01	glmperm	Inference in Generalized Linear Models
2013-03-01	perARMA	Package for Periodic Time Series Analysis
2013-03-01	rCMA	CMA-ES R-to-Java interface
2013-03-01	sgeostat	An Object-oriented Framework for Geostatistical Modeling in S+
2013-02-28	heatex	Heat exchange calculations during physical activity
2013-02-28	het.test	White's Test for Heteroskedasticity
2013-02-28	MOJOV	Mojo Variants: Rare Variants analysis
2013-02-28	norm	Analysis of multivariate normal datasets with missing values
2013-02-27	HDMD	Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
2013-02-27	Rcgmin	Conjugate gradient minimization of nonlinear functions with box constraints
2013-02-26	estout	Estimates Output
2013-02-26	fso	Fuzzy Set Ordination
2013-02-26	orclus	ORCLUS subspace clustering
2013-02-26	SkewHyperbolic	The Skew Hyperbolic Student t-Distribution
2013-02-25	cubature	Adaptive multivariate integration over hypercubes
2013-02-25	EBMAforecast	Ensemble BMA Forecasting
2013-02-25	intcox	Iterated Convex Minorant Algorithm for interval censored event data
2013-02-25	iWeigReg	Improved methods for causal inference and missing data problems
2013-02-25	queueing	Analysis of Queueing Networks and Models
2013-02-25	ror	Robust Ordinal Regression MCDA library
2013-02-25	smcUtils	Utility functions for sequential Monte Carlo
2013-02-25	tsbugs	Create time series BUGS models
2013-02-23	cmm	Categorical Marginal Models
2013-02-23	conf.design	Construction of factorial designs
2013-02-23	fit.models	fit.models
2013-02-22	cheb	Discrete Linear Chebyshev Approximation
2013-02-22	epade	Easy Plots
2013-02-22	MEET	MEET: Motif Elements Estimation Toolkit
2013-02-22	nonparaeff	Nonparametric Methods for Measuring Efficiency and Productivity
2013-02-22	triangle	Provides the standard distribution functions for the triangle distribution
2013-02-21	bspec	Bayesian spectral inference
2013-02-21	Digiroo2	An application programming interface for generating null models of social contacts based on individuals' space use
2013-02-21	DMR	Delete or Merge Regressors for linear model selection
2013-02-21	hash	Full feature implementation of hash/associated arrays/dictionaries
2013-02-21	RSAP	SAP Netweaver RFC connector for R
2013-02-20	PKI	Public Key Infrastucture for R based on the X.509 standard
2013-02-19	designGG	Computational tool for designing genetical genomics experiments
2013-02-18	bild	bild: a package for BInary Longitudinal Data
2013-02-17	audiolyzR	audiolyzR: Give your data a listen
2013-02-17	catenary	Fits a catenary to given points
2013-02-17	GetR	GetR: Calculate Guttman error trees in R
2013-02-16	HIest	Hybrid index estimation
2013-02-16	multinomRob	Robust Estimation of Overdispersed Multinomial Regression Models
2013-02-15	Iboot	Iboot: iterated bootstrap tests and confidence sets
2013-02-15	smdc	Document Similarity
2013-02-14	monreg	Nonparametric monotone regression
2013-02-14	pearson7	Maximum Likelihood Inference for the Pearson VII Distribution with Shape Parameter 3/2
2013-02-14	poibin	The Poisson Binomial Distribution
2013-02-14	survC1	C-statistics for risk prediction models with censored survival data
2013-02-11	ash	David Scott's ASH routines
2013-02-11	gensemble	generalized ensemble methods
2013-02-11	mmeln	MMELN : Estimation of multinormal mixture distribution
2013-02-11	vitality	vitality: Fitting routines for the Vitality family of mortality models
2013-02-09	bayess	Bayesian Essentials with R
2013-02-09	Compounding	Computing Continuous Distributions
2013-02-09	modiscloud	R tools for processing Level 2 Cloud Mask products from MODIS
2013-02-09	SweaveListingUtils	Utilities for Sweave together with TeX listings package
2013-02-08	PVR	Computes phylogenetic eigenvectors regression (PVR) and phylogenetic signal-representation curve (PSR) (with null and Brownian expectations)
2013-02-08	ternvis	Visualisation, verification and calibration of ternary probabilistic forecasts
2013-02-07	beadarrayFilter	Bead filtering for Illumina bead arrays
2013-02-07	debug	MVB's debugger for R
2013-02-07	galts	Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
2013-02-07	NestedCohort	Survival Analysis for Cohorts with Missing Covariate Information
2013-02-07	nlsmsn	Fitting nonlinear models with scale mixture of skew-normal distributions
2013-02-07	orddom	Ordinal Dominance Statistics
2013-02-07	qrnn	Quantile regression neural network
2013-02-06	ExactPath	Exact solution paths for regularized LASSO regressions with L_1 penalty
2013-02-06	glmpath	L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
2013-02-06	stoichcalc	R Functions for Solving Stoichiometric Equations
2013-02-05	exactLoglinTest	Monte Carlo Exact Tests for Log-linear models
2013-02-05	fractalrock	Generate fractal time series with non-normal returns distribution
2013-02-05	gaussquad	Collection of functions for Gaussian quadrature
2013-02-05	ghyp	A package on the generalized hyperbolic distribution and its special cases
2013-02-05	pacbpred	PAC-Bayesian Estimation and Prediction in Sparse Additive Models
2013-02-04	infoDecompuTE	Information Decomposition of Two-phase Experiments
2013-02-04	OOmisc	Ozgur-Ozlem Miscellaneous
2013-02-04	orthopolynom	Collection of functions for orthogonal and orthonormal polynomials
2013-02-04	timeit	Easy profiling of R functions
2013-02-03	degreenet	Models for Skewed Count Distributions Relevant to Networks
2013-02-03	futile.any	Futile library to provide some polymorphic operations
2013-02-03	pdist	Partitioned Distance Function
2013-02-03	TimeProjection	Time Projections
2013-02-01	FindIt	R Package for Finding Heterogeneous Treatment Effects
2013-02-01	nCDunnett	Noncentral Dunnett's test distribution
2013-01-31	ForImp	Imputation of missing values through a forward imputation algorithm
2013-01-30	KappaGUI	GUI for Cohen's and Fleiss' Kappa
2013-01-30	mlearning	Machine learning algorithms with unified interface and confusion matrices
2013-01-30	nephro	Biostatistics utilities for nephrology
2013-01-30	randomGLM	Random General Linear Model Prediction
2013-01-30	rdryad	Dryad API interface
2013-01-30	YieldCurve	Modelling and estimation of the yield curve
2013-01-29	DivMelt	HRM Diversity Assay Analysis Tool
2013-01-29	EMT	Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
2013-01-29	mobForest	Model based Random Forest analysis
2013-01-29	SUE	Subsampling method
2013-01-28	deal	Learning Bayesian Networks with Mixed Variables
2013-01-28	RcmdrPlugin.plotByGroup	Rcmdr plots by group using lattice
2013-01-28	seqPERM	Generates a permutation matrix based upon a sequence
2013-01-28	svSweave	SciViews GUI API - Sweave functions
2013-01-27	bclust	Bayesian clustering using spike-and-slab hierarchical model, suitable for clustering high-dimensional data
2013-01-27	labeltodendro	Convert labels or tables to a dendrogram
2013-01-26	emme2	Read and Write to an EMME/2 databank
2013-01-26	shapefiles	Read and Write ESRI Shapefiles
2013-01-26	UWHAM	Unbinned weighted histogram analysis method (UWHAM)
2013-01-25	FI	Provide functions for forest inventory calculations
2013-01-25	metatest	Fit and test metaregression models
2013-01-25	misc3d	Miscellaneous 3D Plots
2013-01-25	pln	Polytomous logit-normit (graded logistic) model estimation
2013-01-25	RcmdrPlugin.StatisticalURV	Statistical URV Rcmdr Plug-In
2013-01-25	RcmdrPlugin.TeachingDemos	Rcmdr Teaching Demos Plug-In
2013-01-24	dichromat	Color Schemes for Dichromats
2013-01-24	medSTC	A max-margin supervised Sparse Topical Coding Model
2013-01-24	RcmdrPlugin.SLC	SLC Rcmdr Plug-in
2013-01-24	SLC	Slope and level change
2013-01-23	RcmdrPlugin.KMggplot2	An Rcmdr Plug-In for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package
2013-01-23	sirad	Functions for calculating daily solar radiation and evapotranspiration
2013-01-22	RCALI	Calculation of the Integrated Flow of Particles between Polygons
2013-01-21	contfrac	Continued fractions
2013-01-21	gemtc.jar	GeMTC Java binary
2013-01-21	MM	The multiplicative multinomial distribution
2013-01-21	multipol	multivariate polynomials
2013-01-21	Oarray	Arrays with arbitrary offsets
2013-01-21	randomNames	Random name generating function and data set
2013-01-21	RcmdrPlugin.orloca	orloca Rcmdr Plug-in
2013-01-21	semPLS	Structural Equation Modeling Using Partial Least Squares
2013-01-21	stellaR	stellar evolution tracks and isochrones
2013-01-21	TeachingDemos	Demonstrations for teaching and learning
2013-01-20	pequod	Moderated regression package
2013-01-19	adaptsmoFMRI	Adaptive Smoothing of FMRI Data
2013-01-19	currentSurvival	Estimation of CCI and CLFS Functions
2013-01-19	RcppXts	Interface the xts API via Rcpp
2013-01-18	BCBCSF	Bias-corrected Bayesian Classification with Selected Features
2013-01-18	blockrand	Randomization for block random clinical trials
2013-01-18	CVThresh	Level-Dependent Cross-Validation Thresholding
2013-01-18	edcc	Economic Design of Control Charts
2013-01-18	obsSens	Sensitivity analysis for Observational studies
2013-01-18	partitionMap	Partition Maps
2013-01-17	GWG	Calculation of probabilities for inadequate and excessive gestational weight gain
2013-01-17	RcmdrPlugin.survival	R Commander Plug-in for the survival Package
2013-01-16	Bhat	General likelihood exploration
2013-01-16	RcppExamples	Examples using Rcpp to interface R and C++
2013-01-16	rms.gof	Root-mean-square goodness-of-fit test for simple null hypothesis
2013-01-16	setwidth	Set the value of options("width") on terminal emulators
2013-01-16	spacodiR	Spatial and Phylogenetic Analysis of Community Diversity
2013-01-15	RcppRoll	Fast rolling functions through Rcpp and RcppArmadillo
2013-01-15	SMPracticals	Practicals for use with Davison (2003) Statistical Models
2013-01-14	ESG	ESG - A package for asset projection
2013-01-14	s20x	Stats 20x
2013-01-14	samplingbook	Survey Sampling Procedures
2013-01-14	subtype	Cluster analysis to find molecular subtypes and their assessment
2013-01-14	xoi	Tools for analyzing crossover interference
2013-01-13	actuar	Actuarial functions
2013-01-13	survivalROC	Time-dependent ROC curve estimation from censored survival data
2013-01-12	pass	Prediction and Stability Selection of Tuning Parameters
2013-01-11	gtx	Genetics ToolboX
2013-01-11	orloca.es	Spanish version of orloca package
2013-01-09	BioPhysConnectoR	BioPhysConnectoR
2013-01-09	PROTOLIDAR	PRocess TOol LIdar DAta in R
2013-01-09	RcmdrPlugin.mosaic	Adds menu items to produce mosaic plots and assoc plots to Rcmdr
2013-01-09	Rniftilib	Rniftilib - R Interface to NIFTICLIB (V2.0.0: 2010-07-20)
2013-01-08	clusterGeneration	random cluster generation (with specified degree of separation)
2013-01-08	HDclassif	High Dimensional Supervised Classification and Clustering
2013-01-08	hier.part	Hierarchical Partitioning
2013-01-08	RcmdrPlugin.seeg	Rcmdr Plugin for seeg
2013-01-08	riskRegression	Risk regression for survival analysis
2013-01-07	displayHTS	displayHTS
2013-01-07	rJPSGCS	R-interface to gene drop Java Programs for Statistical Genetics and Computational Statistics (JPSGCS)
2013-01-07	stacomirtools	stacomi ODBC connection class
2013-01-06	DCluster	Functions for the detection of spatial clusters of diseases
2013-01-05	ETLUtils	Utility functions to execute standard ETL operations (using package ff) on large data
2013-01-05	GWASExactHW	Exact Hardy-Weinburg testing for Genome Wide Association Studies
2013-01-05	munfold	Metric Unfolding
2013-01-05	Stat2Data	Datasets for Stat2
2013-01-04	proteomicdesign	Optimization of a multi-stage proteomic study
2013-01-04	seeg	Statistics for Environmental Sciences, Engineering, and Geography
2013-01-04	sparcl	Perform sparse hierarchical clustering and sparse k-means clustering
2013-01-03	ldlasso	LD LASSO Regression for SNP Association Study
2013-01-03	partialOR	Partial Odds Ratio
2013-01-02	bootES	Bootstrap Effect Sizes
2013-01-02	royston	Royston's H Test: Multivariate Normality Test
2012-12-31	RcmdrPlugin.SM	Rcmdr Sport Management Plug-In
2012-12-30	opefimor	Option Pricing and Estimation of Financial Models in R
2012-12-30	RcppClassicExamples	Examples using RcppClassic to interface R and C++
2012-12-30	SPSL	Site Percolation on Square Lattice (SPSL)
2012-12-29	psytabs	Produce well-formatted tables for psychological research
2012-12-28	trapezoid	The Trapezoidal Distribution
2012-12-27	bisoreg	Bayesian Isotonic Regression with Bernstein Polynomials
2012-12-27	fgui	Function GUI
2012-12-27	randomizeBE	Function to create a random list for crossover studies
2012-12-25	truncgof	GoF tests allowing for left truncated data
2012-12-24	MedOr	Median Ordering Statistical R package
2012-12-24	MOCCA	Multi-objective optimization for collecting cluster alternatives
2012-12-23	RXKCD	Get XKCD comic from R
2012-12-23	svmpath	svmpath: the SVM Path algorithm
2012-12-22	DiversitySampler	Functions for re-sampling a community matrix to compute diversity indices at different sampling levels
2012-12-22	dyn	Time Series Regression
2012-12-22	MetaQC	MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
2012-12-22	proto	Prototype object-based programming
2012-12-21	BurStMisc	Burns Statistics miscellaneous
2012-12-21	imputeMDR	The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
2012-12-21	Lock5Data	Datasets for "Statistics: UnLocking the Power of Data"
2012-12-21	mvinfluence	Influence Measures and Diagnostic Plots for Multivariate Linear Models
2012-12-21	mvnmle	ML estimation for multivariate normal data with missing values
2012-12-21	NSA	Post-normalization of total copy numbers
2012-12-21	ORMDR	ORMDR
2012-12-21	ReCiPa	Redundancy Control in Pathways databases
2012-12-21	sperich	Auxiliary functions to estimate centers of biodiversity
2012-12-20	hbmem	Hierarchical Bayesian Analysis of Recognition Memory
2012-12-19	Kpart	Spline Fitting
2012-12-19	LeafAngle	Fits, plots, and summarizes leaf angle distributions
2012-12-19	nose	nose Package for R
2012-12-17	dblcens	Compute the NPMLE of distribution from doubly censored data
2012-12-17	MBESS	MBESS
2012-12-17	MFDA	Model Based Functional Data Analysis
2012-12-16	WordPools	Classical word pools used in studies of learning and memory
2012-12-15	ConjointChecks	A package to check the cancellation axioms of conjoint measurement
2012-12-15	cosmoFns	Functions for cosmological distances, times, luminosities, etc
2012-12-15	dataframes2xls	dataframes2xls writes data frames to xls files
2012-12-15	FastRWeb	Fast Interactive Framework for Web Scripting Using R
2012-12-15	LeLogicielR	Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
2012-12-14	hapsim	Haplotype Data Simulation
2012-12-14	ltsa	Linear time series analysis
2012-12-14	MuFiCokriging	Multi-Fidelity Cokriging models
2012-12-13	snowFT	Fault Tolerant Simple Network of Workstations
2012-12-12	FinancialInstrument	Financial Instrument Model Infrastructure for R
2012-12-12	nutshell	Data for "R in a Nutshell"
2012-12-12	nutshell.audioscrobbler	Audioscrobbler data for "R in a Nutshell"
2012-12-12	nutshell.bbdb	Baseball Database for "R in a Nutshell"
2012-12-12	OptInterim	Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint
2012-12-11	IndependenceTests	Nonparametric tests of independence between random vectors
2012-12-10	ftnonpar	Features and Strings for Nonparametric Regression
2012-12-10	ifs	Iterated Function Systems
2012-12-10	SampleSizeMeans	Sample size calculations for normal means
2012-12-08	Bmix	Bayesian Sampling for Stick-breaking Mixtures
2012-12-08	RDIDQ	It perform Quality check on data
2012-12-08	rpartScore	Classification trees for ordinal responses
2012-12-07	MultinomialCI	Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
2012-12-07	Rdistance	Distance sampling analyses
2012-12-07	SvyNom	Nomograms for Right-Censored Outcomes from Survey Designs
2012-12-06	stringr	Make it easier to work with strings
2012-12-05	gtable	Arrange grobs in tables
2012-12-05	simba	A Collection of functions for similarity analysis of vegetation data
2012-12-04	glmc	Fitting Generalized Linear Models Subject to Constraints
2012-12-04	soilwater	soilwater: Implements parametric formulas for soil water retention or conductivity curve
2012-12-04	source.gist	Read R code from a GitHub Gist
2012-12-03	KMsurv	Data sets from Klein and Moeschberger (1997), Survival Analysis
2012-12-03	muma	Metabolomics Univariate and Multivariate Analysis
2012-12-02	brainwaver	Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory
2012-12-02	emdist	Earth Mover's Distance
2012-12-02	fracdiff	Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
2012-12-01	ffmanova	Fifty-fifty MANOVA
2012-12-01	sybilDynFBA	Dynamic FBA : dynamic flux balance analysis
2012-11-30	gcookbook	Data for "R Graphics Cookbook"
2012-11-30	operator.tools	Utilities for working with R's operators
2012-11-28	PenLNM	Group l1 penalized logistic normal multinomial (LNM) regression model
2012-11-28	plmm	Partially Linear Mixed Effects Model
2012-11-27	bootRes	Bootstrapped Response and Correlation Functions
2012-11-27	JASPAR	R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
2012-11-27	TFX	R API to TrueFX(tm)
2012-11-26	distfree.cr	Distribution-free confidence region (distfree.cr)
2012-11-26	maptree	Mapping, pruning, and graphing tree models
2012-11-26	rts	Raster time series analysis
2012-11-25	gRc	Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
2012-11-24	pairedCI	Confidence intervals for the ratio of locations and for the ratio of scales of two paired samples
2012-11-24	stepwise	Stepwise detection of recombination breakpoints
2012-11-24	W2CWM2C	The W2CWM2C package is a set of functions to produce new graphical tools for wavelet correlation (bivariate and multivariate cases) using some routines from the waveslim and wavemulcor packages
2012-11-23	rvertnet	Search VertNet database from R
2012-11-21	rich	Computes and compares species richnesses
2012-11-20	ChoiceModelR	Choice Modeling in R
2012-11-20	LTPDvar	LTPD and AOQL plans for acceptance sampling inspection by variables
2012-11-20	sciplot	Scientific Graphing Functions for Factorial Designs
2012-11-20	stppResid	Perform residual analysis on space-time point process models
2012-11-20	tnet	tnet: Software for Analysis of Weighted, Two-mode, and Longitudinal networks
2012-11-18	systemfit	Estimating Systems of Simultaneous Equations
2012-11-17	BAEssd	Bayesian Average Error approach to Sample Size Determination
2012-11-17	HWEintrinsic	Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
2012-11-17	mederrRank	Bayesian Methods for Identifying the Most Harmful Medication Errors
2012-11-17	spectralGP	Approximate Gaussian processes using the Fourier basis
2012-11-15	epibasix	Elementary Epidemiological Functions for Epidemiology and Biostatistics
2012-11-15	PAWL	Implementation of the PAWL algorithm
2012-11-14	bindata	Generation of Artificial Binary Data
2012-11-14	linLIR	linear Likelihood-based Imprecise Regression
2012-11-13	ade4TkGUI	ade4 Tcl/Tk Graphical User Interface
2012-11-13	adimpro	Adaptive Smoothing of Digital Images
2012-11-13	ismev	An Introduction to Statistical Modeling of Extreme Values
2012-11-13	mixcat	Mixed effects cumulative link and logistic regression models
2012-11-13	plsdepot	Partial Least Squares (PLS) Data Analysis Methods
2012-11-13	stratification	Univariate Stratification of Survey Populations
2012-11-13	TSA	Time Series Analysis
2012-11-11	egonet	Tool for ego-centric measures in Social Network Analysis
2012-11-11	lcd	Learn Chain graphs via Decomposition
2012-11-11	nlt	A nondecimated lifting transform for signal denoising
2012-11-09	apTreeshape	Analyses of Phylogenetic Treeshape
2012-11-09	Rhh	Calculating multilocus heterozygosity and heterozygosity-heterozygosity correlation
2012-11-09	STAR	Spike Train Analysis with R
2012-11-08	mtsdi	Multivariate time series data imputation
2012-11-08	rAltmetric	Retrieves altmerics data for any published paper from altmetrics.com
2012-11-07	Davies	The Davies quantile function
2012-11-07	DSpat	Spatial modelling for distance sampling data
2012-11-07	fExoticOptions	Exotic Option Valuation
2012-11-07	ResistorArray	electrical properties of resistor networks
2012-11-07	waved	Wavelet Deconvolution
2012-11-06	adlift	An adaptive lifting scheme algorithm
2012-11-06	coda	Output analysis and diagnostics for MCMC
2012-11-06	penalized	L1 (lasso and fused lasso) and L2 (ridge) penalized estimation in GLMs and in the Cox model
2012-11-05	CHsharp	Choi and Hall Clustering in 3d
2012-11-05	homtest	Homogeneity tests for Regional Frequency Analysis
2012-11-05	scagnostics	Compute scagnostics - scatterplot diagnostics
2012-11-03	mcmcplots	Create Plots from MCMC Output
2012-11-03	mlica2	Independent Component Analysis using Maximum Likelihood
2012-11-03	tableplot	Represents tables as semi-graphic displays
2012-11-02	frmqa	The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
2012-11-02	IDPmisc	Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
2012-11-02	mratios	Inferences for ratios of coefficients in the general linear model
2012-11-02	smirnov	Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book
2012-11-01	argosfilter	Argos locations filter
2012-11-01	fpow	Computing the noncentrality parameter of the noncentral F distribution
2012-11-01	isopam	Isopam (Clustering)
2012-11-01	MindOnStats	Data sets included in Utts and Heckard's Mind on Statistics
2012-11-01	SwissAir	Air Quality Data of Switzerland for one year in 30 min Resolution
2012-11-01	xgobi	Interface to the XGobi and XGvis programs for graphical data analysis
2012-10-31	dynCorr	Dynamic Correlation Package
2012-10-31	NORMT3	Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t
2012-10-31	pbivnorm	Vectorized Bivariate Normal CDF
2012-10-31	waveband	Computes credible intervals for Bayesian wavelet shrinkage
2012-10-30	Actigraphy	Actigraphy Data Analysis
2012-10-30	cat	Analysis of categorical-variable datasets with missing values
2012-10-30	cudaBayesregData	Data sets for the examples used in the package "cudaBayesreg"
2012-10-30	degenes	Detection of differentially expressed genes
2012-10-30	expsmooth	Data sets from "Forecasting with exponential smoothing"
2012-10-30	fma	Data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (1998)
2012-10-30	gnumeric	Read data from files readable by gnumeric
2012-10-30	ScreenClean	Screen and clean variable selection procedures
2012-10-30	speff2trial	Semiparametric efficient estimation for a two-sample treatment effect
2012-10-30	waterfall	Waterfall Charts in R
2012-10-29	ACCLMA	ACC & LMA Graph Plotting
2012-10-29	AdaptFit	Adaptive Semiparametic Regression
2012-10-29	Agreement	Statistical Tools for Measuring Agreement
2012-10-29	alabama	Constrained nonlinear optimization
2012-10-29	allan	Automated Large Linear Analysis Node
2012-10-29	allanvar	Allan Variance Analysis
2012-10-29	AllPossibleSpellings	Computes all of a word's possible spellings
2012-10-29	anapuce	Tools for microarray data analysis
2012-10-29	andrews	Andrews curves
2012-10-29	anesrake	ANES Raking Implementation
2012-10-29	APSIMBatch	Analysis the output of Apsim software
2012-10-29	audit	Bounds for Accounting Populations
2012-10-29	BaM	Functions and datasets for books by Jeff Gill
2012-10-29	batade	HTML reports and so on
2012-10-29	bayespref	Hierarchical Bayesian analysis of ecological count data
2012-10-29	BayHaz	R Functions for Bayesian Hazard Rate Estimation
2012-10-29	bentcableAR	Bent-Cable Regression for Independent Data or Autoregressive Time Series
2012-10-29	betafam	Detecting rare variants for quantitative traits using nuclear families
2012-10-29	betaper	Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
2012-10-29	bethel	Bethel's algorithm
2012-10-29	BGSIMD	Block Gibbs Sampler with Incomplete Multinomial Distribution
2012-10-29	bimetallic	Power for SNP analyses using silver standard cases
2012-10-29	Biodem	Biodemography functions
2012-10-29	biopara	Self-contained parallel system for R
2012-10-29	bivarRIpower	Sample size calculations for bivariate longitudinal data
2012-10-29	biwt	Functions to compute the biweight mean vector and covariance & correlation matrices
2012-10-29	bootspecdens	Testing equality of spectral densities
2012-10-29	CARramps	Reparameterized and marginalized posterior sampling for conditional autoregressive models
2012-10-29	CCA	Canonical correlation analysis
2012-10-29	CCP	Significance Tests for Canonical Correlation Analysis (CCA)
2012-10-29	CDFt	Statistical downscaling through CDF-transform
2012-10-29	CircStats	Circular Statistics, from "Topics in circular Statistics" (2001)
2012-10-29	CMC	Cronbach-Mesbah Curve
2012-10-29	colorRamps	Builds color tables
2012-10-29	combinat	combinatorics utilities
2012-10-29	CombMSC	Combined Model Selection Criteria
2012-10-29	comorbidities	Categorizes ICD-9-CM codes based on published comorbidity indices
2012-10-29	CompareTests	Estimate diagnostic accuracy (sensitivity, specificity, etc) and agreement statistics when one test is conducted on only a subsample of specimens
2012-10-29	compoisson	Conway-Maxwell-Poisson Distribution
2012-10-29	concor	Concordance
2012-10-29	COP	Variables selection for index models via correlation pursuit
2012-10-29	cotrend	Consistant Cotrend Rank Selection
2012-10-29	cumSeg	Change point detection in genomic sequences
2012-10-29	dbConnect	Provides a graphical user interface to connect with databases that use MySQL
2012-10-29	dinamic	DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
2012-10-29	discretization	Data preprocessing, discretization for classification
2012-10-29	divagis	Provides tools for quality checks of georeferenced plant species accessions
2012-10-29	dpa	Dynamic Path Approach
2012-10-29	drm	Regression and association models for repeated categorical data
2012-10-29	DTDA	Doubly truncated data analysis
2012-10-29	EbayesThresh	Empirical Bayes Thresholding and Related Methods
2012-10-29	eigeninv	Generates (dense) matrices that have a given set of eigenvalues
2012-10-29	elec	Collection of functions for statistical election audits
2012-10-29	EMJumpDiffusion	EM-Algorithm for Jump Diffusion processes
2012-10-29	emplik2	Empirical-likelihood test (two-sample, censored data)
2012-10-29	EngrExpt	Data sets from "Introductory Statistics for Engineering Experimentation"
2012-10-29	evora	Epigenetic Variable Outliers for Risk prediction Analysis
2012-10-29	eyetracking	Eyetracking Helper Functions
2012-10-29	FactMixtAnalysis	Factor Mixture Analysis with covariates
2012-10-29	FAdist	Distributions that are sometimes used in hydrology
2012-10-29	FAwR	Functions and Datasets for "Forest Analytics with R"
2012-10-29	fgac	Generalized Archimedean Copula
2012-10-29	fit4NM	NONMEM platform
2012-10-29	Flury	Data Sets from Flury, 1997
2012-10-29	forensic	Statistical Methods in Forensic Genetics
2012-10-29	forward	Forward search
2012-10-29	FourScores	FourScores - A game for two players
2012-10-29	freqMAP	Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
2012-10-29	frt	Full Randomization Test
2012-10-29	FTICRMS	Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
2012-10-29	GA4Stratification	A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
2012-10-29	GAD	GAD: Analysis of variance from general principles
2012-10-29	GANPAdata	The GANPA Datasets Package
2012-10-29	gbs	Package for Generalized Birnbaum-Saunders Distributions
2012-10-29	GeneF	Package for Generalized F-statistics
2012-10-29	GeneReg	Construct time delay gene regulatory network
2012-10-29	geomapdata	Data for topographic and Geologic Mapping
2012-10-29	gibbs.met	Naive Gibbs Sampling with Metropolis Steps
2012-10-29	globalboosttest	Testing the additional predictive value of high-dimensional data
2012-10-29	gPdtest	Bootstrap goodness-of-fit test for the generalized Pareto distribution
2012-10-29	gwerAM	Controlling the genome-wide type I error rate in association mapping experiments
2012-10-29	HadoopStreaming	Utilities for using R scripts in Hadoop streaming
2012-10-29	HAPim	HapIM
2012-10-29	haplo.ccs	Estimate Haplotype Relative Risks in Case-Control Data
2012-10-29	heatmap.plus	Heatmap with more sensible behavior
2012-10-29	HMR	Flux estimation with static chamber data
2012-10-29	holdem	Texas Holdem simulator
2012-10-29	homeR	Functions useful for building physics
2012-10-29	hotspots	Hot spots
2012-10-29	HPbayes	Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
2012-10-29	icomp	ICOMP criterion
2012-10-29	igraphtosonia	Convert iGraph graps to SoNIA .son files
2012-10-29	Imap	Interactive Mapping
2012-10-29	IMIS	Increamental Mixture Importance Sampling
2012-10-29	ImpactIV	Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
2012-10-29	InfDim	Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories
2012-10-29	insideRODE	insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes
2012-10-29	integrOmics	end of integrOmics package
2012-10-29	Interpol	Interpolation of amino acid sequences
2012-10-29	intRegGOF	Integrated Regression Goodness of Fit
2012-10-29	introgress	methods for analyzing introgression between divergent lineages
2012-10-29	ISDA.R	interval symbolic data analysis for R
2012-10-29	isopat	Calculation of isotopic pattern for a given molecular formula
2012-10-29	Julia	Fractal Image Data Generator
2012-10-29	klin	Linear equations with Kronecker structure
2012-10-29	KsPlot	Check the power of seveal statistical models
2012-10-29	kzft	Kolmogorov-Zurbenko Fourier Transform and Applications
2012-10-29	lmec	Linear Mixed-Effects Models with Censored Responses
2012-10-29	lqa	Penalized Likelihood Inference for GLMs
2012-10-29	lss	the accelerated failure time model to right censored data based on least-squares principle
2012-10-29	LTR	Perform LTR analysis on microarray data
2012-10-29	MAc	Meta-Analysis with Correlations
2012-10-29	MAclinical	Class prediction based on microarray data and clinical parameters
2012-10-29	mAr	Multivariate AutoRegressive analysis
2012-10-29	MBCluster.Seq	Model-Based Clustering for RNA-seq Data
2012-10-29	MChtest	Monte Carlo hypothesis tests with Sequential Stopping
2012-10-29	metaMA	Meta-analysis for MicroArrays
2012-10-29	Miney	Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
2012-10-29	minxent	Entropy Optimization Distributions
2012-10-29	miP	Multiple Imputation Plots
2012-10-29	mixdist	Finite Mixture Distribution Models
2012-10-29	mixedQF	Estimator with Qudratics Forms in Mixeds Models
2012-10-29	MKLE	Maximum kernel likelihood estimation
2012-10-29	mpa	CoWords Method
2012-10-29	multibiplotGUI	Multibiplot Analysis in R
2012-10-29	mvsf	Shapiro-Francia Multivariate Normality Test
2012-10-29	NetCluster	Clustering for networks
2012-10-29	NetData	Network Data for McFarland's SNA R labs
2012-10-29	NightDay	Night and Day Boundary Plot Funtion
2012-10-29	nlADG	Regression in the Normal Linear ADG Model
2012-10-29	NMFN	Non-negative Matrix Factorization
2012-10-29	normwhn.test	Normality and White Noise Testing
2012-10-29	NPMPM	tertiary probabilistic model in predictive microbiology for use in food manufacture
2012-10-29	nppbib	Nonparametric Partially-Balanced Incomplete Block Design Analysis
2012-10-29	OligoSpecificitySystem	Oligo Specificity System
2012-10-29	omd	filter the molecular descriptors for QSAR
2012-10-29	oncomodel	Maximum likelihood tree models for oncogenesis
2012-10-29	OPE	Outer-product emulator
2012-10-29	ORDER2PARENT	Estimate parent distributions with data of several order statistics
2012-10-29	ORIClust	Order-restricted Information Criterion-based Clustering Algorithm
2012-10-29	paleoMAS	Paleoecological Analysis
2012-10-29	pamm	Power analysis for random effects in mixed models
2012-10-29	parfossil	Parallelized functions for palaeoecological and palaeogeographical analysis
2012-10-29	parviol	Parviol
2012-10-29	PASWR	PROBABILITY and STATISTICS WITH R
2012-10-29	Peaks	Peaks
2012-10-29	penalizedSVM	Feature Selection SVM using penalty functions
2012-10-29	permtest	Permutation test to compare variability within and distance between two groups
2012-10-29	pesticides	Analysis of single serving and composite pesticide residue measurements
2012-10-29	pGLS	Generalized Least Square in comparative Phylogenetics
2012-10-29	phylotools	Phylogenetic tools for Eco-phylogenetics
2012-10-29	PKmodelFinder	Software for Pharmacokinetic model
2012-10-29	plsgenomics	PLS analyses for genomics
2012-10-29	poistweedie	Poisson-Tweedie exponential family models
2012-10-29	PopGenKit	Useful functions for (batch) file conversion and data resampling in microsatellite datasets
2012-10-29	ppcor	Partial and Semi-partial (Part) correlation
2012-10-29	pps	Functions for PPS sampling
2012-10-29	pragma	Provides a pragma / directive / keyword syntax for R
2012-10-29	PredictiveRegression	Prediction Intervals for Three Basic Statistical Models
2012-10-29	predmixcor	Classification rule based on Bayesian mixture models with feature selection bias corrected
2012-10-29	ProbForecastGOP	Probabilistic weather forecast using the GOP method
2012-10-29	pwr	Basic functions for power analysis
2012-10-29	qlspack	Quasi Least Square Package
2012-10-29	qPCR.CT	qPCR data analysis and plot package
2012-10-29	qtlDesign	Design of QTL experiments
2012-10-29	rdetools	Relevant Dimension Estimation (RDE) in Feature Spaces
2012-10-29	reams	Resampling-Based Adaptive Model Selection
2012-10-29	Records	Record Values and Record Times
2012-10-29	REQS	R/EQS Interface
2012-10-29	RHT	Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis
2012-10-29	ringscale	Ringscale
2012-10-29	rmeta	Meta-analysis
2012-10-29	ROCwoGS	Non-parametric estimation of ROC curves without Gold Standard Test
2012-10-29	RODM	R interface to Oracle Data Mining
2012-10-29	RPyGeo	ArcGIS Geoprocessing in R via Python
2012-10-29	Rsundials	Suite of Nonlinear Differential Algebraic Equations Solvers in R
2012-10-29	rSymPy	R interface to SymPy computer algebra system
2012-10-29	sbgcop	Semiparametric Bayesian Gaussian copula estimation and imputation
2012-10-29	sddpack	Semidiscrete Decomposition
2012-10-29	sdef	Synthesizing List of Differentially Expressed Features
2012-10-29	separationplot	Separation Plots
2012-10-29	seqCBS	CN Profiling using Sequencing and CBS
2012-10-29	seqmon	Sequential Monitoring of Clinical Trials
2012-10-29	seqRFLP	Simulation and visualization of restriction enzyme cutting pattern from DNA sequences
2012-10-29	session	Functions for interacting with, saving and restoring R sessions
2012-10-29	SiZer	SiZer: Significant Zero Crossings
2012-10-29	skewt	The Skewed Student-t Distribution
2012-10-29	smco	A simple Monte Carlo optimizer using adaptive coordinate sampling
2012-10-29	SMIR	Companion to Statistical Modelling in R
2012-10-29	SMVar	Structural Model for variances
2012-10-29	SNPmaxsel	Maximally selected statistics for SNP data
2012-10-29	spi	Compute SPI index
2012-10-29	sporm	Semiparametric proportional odds rate model
2012-10-29	sra	Selection Response Analysis
2012-10-29	ssanv	Sample Size Adjusted for Nonadherence or Variability of input parameters
2012-10-29	ssize.fdr	Sample Size Calculations for Microarray Experiments
2012-10-29	Stem	Spatio-temporal models in R
2012-10-29	stinepack	Stineman, a consistently well behaved method of interpolation
2012-10-29	stratigraph	Toolkit for the plotting and analysis of stratigraphic and palaeontological data
2012-10-29	StressStrength	Computation and estimation of reliability of stress-strength models
2012-10-29	symbols	Symbol plots
2012-10-29	TANOVA	Time Course Analysis of Variance for Microarray
2012-10-29	TERAplusB	Test for A+B Traditional Escalation Rule
2012-10-29	tfer	Forensic Glass Transfer Probabilities
2012-10-29	titan	Titration analysis for mass spectrometry data
2012-10-29	TRIANG	Symmetric discrete triangular distributions
2012-10-29	TRIANGG	General discrete triangular distribution
2012-10-29	trifield	Some basic facilities for ternary fields and plots
2012-10-29	trimcluster	Cluster analysis with trimming
2012-10-29	tslars	Least angle regression for time series analysis
2012-10-29	Tsphere	Transposable Sphering for Large-Scale Inference with Correlated Data
2012-10-29	unbalhaar	Function estimation via Unbalanced Haar wavelets
2012-10-29	UScensus2000blkgrp	US Census 2000 Block Group Shapefiles and Additional Demographic Data
2012-10-29	UScensus2000cdp	US Census 2000 Designated Places Shapefiles and Additional Demographic Data
2012-10-29	UScensus2000tract	US Census 2000 Tract Level Shapefiles and Additional Demographic Data
2012-10-29	vegetarian	Jost Diversity Measures for Community Data
2012-10-29	VIF	VIF Regression: A Fast Regression Algorithm For Large Data
2012-10-29	violinmplot	Combination of violin plot with mean and standard deviation
2012-10-29	walkscoreAPI	Walk Score and Transit Score API
2012-10-29	WaveCD	Wavelet change point detection for array CGH data
2012-10-29	wavemulcor	Wavelet routine for multiple correlation
2012-10-29	wikibooks	Functions and datasets of the german WikiBook "GNU R"
2012-10-29	WilcoxCV	Wilcoxon-based variable selection in cross-validation
2012-10-29	wombsoft	Wombling Computation
2012-10-29	write.snns	Function for exporting data to SNNS pattern files
2012-10-29	wSVM	Weighted SVM with boosting algorithm for improving accuracy
2012-10-29	yacca	Yet Another Canonical Correlation Analysis Package
2012-10-27	nlmeODE	Non-linear mixed-effects modelling in nlme using differential equations
2012-10-26	joineR	Joint modelling of repeated measurements and time-to-event data
2012-10-25	locpol	Kernel local polynomial regression
2012-10-24	CARE1	Statistical package for population size estimation in capture-recapture models
2012-10-24	dpglasso	Primal Graphical Lasso
2012-10-23	pheno	Auxiliary functions for phenological data analysis
2012-10-23	RGtk2Extras	Data frame editor and dialog making wrapper for RGtk2
2012-10-22	detrendeR	Start the detrendeR Graphical User Interface (GUI)
2012-10-22	landsat	Radiometric and topographic correction of satellite imagery
2012-10-21	capme	Covariate Adjusted Precision Matrix Estimation
2012-10-20	MBI	(M)ultiple-site (B)iodiversity (I)ndices Calculator
2012-10-19	DiscreteInverseWeibull	Discrete inverse Weibull distribution
2012-10-19	TwoCop	Nonparametric test of equality between two copulas
2012-10-18	breakage	SICM pipette tip geometry estimation
2012-10-18	HiPLARM	High Performance Linear Algebra in R
2012-10-17	bmk	MCMC diagnostics package
2012-10-17	linprog	Linear Programming / Optimization
2012-10-16	PhaseType	Inference for Phase-type Distributions
2012-10-15	lineup	Lining up two sets of measurements
2012-10-15	modeest	Mode Estimation
2012-10-15	npde	Normalised prediction distribution errors for nonlinear mixed-effect models
2012-10-15	orcutt	Estimate procedure in case of first order autocorrelation
2012-10-15	Ridit	Ridit Analysis (An extension of the Kruskal-Wallis Test.)
2012-10-14	lda	Collapsed Gibbs sampling methods for topic models
2012-10-14	numDeriv	Accurate Numerical Derivatives
2012-10-12	ChemometricsWithRData	Data for package ChemometricsWithR
2012-10-11	FlexParamCurve	Tools to Fit Flexible Parametric Curves
2012-10-11	powerpkg	Power analyses for the affected sib pair and the TDT design
2012-10-10	PoissonSeq	Significance analysis of sequencing data based on a Poisson log linear model
2012-10-08	expoRkit	Expokit in R
2012-10-05	r2stl	r2stl, R package for visualizing data using a 3D printer
2012-10-05	Rivivc	In vitro in vivo correlation linear level A
2012-10-04	fastSOM	Fast Calculation of Spillover Measures
2012-10-04	FRCC	Fast Regularized Canonical Correlation Analysis
2012-10-04	freeknotsplines	Free-Knot Splines
2012-10-04	rrBlupMethod6	Re-parametrization of RR-BLUP to allow for a fixed residual variance
2012-10-03	rworldxtra	Country boundaries at high resolution
2012-10-01	biasbetareg	Bias correction of the parameter estimates of the beta regression model
2012-10-01	gbRd	Utilities for processing Rd objects and files
2012-10-01	loop	loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
2012-09-30	epitools	Epidemiology Tools
2012-09-29	astroFns	Astronomy: time and position functions, misc. utilities
2012-09-29	trackObjs	Track Objects (last release - package name changed to 'track')
2012-09-28	hierarchicalDS	Functions for performing hierarchical analysis of distance sampling data
2012-09-28	reccsim	Simulation of Rare Events Case-Control Studies
2012-09-27	Brq	Bayesian analysis of quantile regression models
2012-09-27	monmlp	Monotone multi-layer perceptron neural network
2012-09-27	RWeather	R wrapper around the Yahoo! Weather, Google Weather and NOAA APIs
2012-09-26	ccChooser	Developing a core collections
2012-09-26	risksetROC	Riskset ROC curve estimation from censored survival data
2012-09-26	smcure	Fit Semiparametric Mixture Cure Models
2012-09-26	spatgraphs	Graphs for spatial point patterns
2012-09-25	emoa	Evolutionary Multiobjective Optimization Algorithms
2012-09-22	NonpModelCheck	Model Checking and Variable Selection in Nonparametric Regression
2012-09-20	binomialcftp	Generates binomial random numbers via the coupling from the past algorithm
2012-09-20	neuralnet	Training of neural networks
2012-09-20	tframe	Time Frame coding kernel
2012-09-19	epicalc	Epidemiological calculator
2012-09-19	namespace	Provide namespace managment functions not (yet) present in base R
2012-09-19	nparLD	Nonparametric Analysis of Longitudinal Data in Factorial Experiments
2012-09-18	MitISEM	Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
2012-09-18	msSurv	Nonparametric Estimation for Multistate Models
2012-09-17	Giza	Constructing panels of population pyramid plots based on lattice
2012-09-15	abcdeFBA	ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package
2012-09-15	matrixcalc	Collection of functions for matrix calculations
2012-09-14	ActuDistns	Functions for actuarial scientists
2012-09-14	cslogistic	Conditionally Specified Logistic Regression
2012-09-14	DPpackage	Bayesian nonparametric modeling in R
2012-09-14	okmesonet	Retrieve Oklahoma Mesonet climatological data
2012-09-14	WCQ	Detection of QTL effects in a small mapping population
2012-09-13	JavaGD	Java Graphics Device
2012-09-13	robfilter	Robust Time Series Filters
2012-09-13	spcov	Sparse Estimation of a Covariance Matrix
2012-09-12	Sleuth2	Data sets from Ramsey and Schafer's "Statistical Sleuth (2nd ed)"
2012-09-11	BayesNI	BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
2012-09-11	CePa	Centrality-based pathway enrichment
2012-09-10	hmeasure	The H-measure and other scalar classification performance metrics
2012-09-10	paran	Horn's Test of Principal Components/Factors
2012-09-06	FMStable	Finite Moment Stable Distributions
2012-09-06	NISTnls	Nonlinear least squares examples from NIST
2012-09-06	pi0	Estimating the proportion of true null hypotheses for FDR
2012-09-05	hbsae	Hierarchical Bayesian Small Area Estimation
2012-09-04	granovaGG	Graphical Analysis of Variance Using ggplot2
2012-09-04	ipdmeta	Tools for subgroup analyses with multiple trial data using aggregate statistics
2012-09-04	miniGUI	tktcl quick and simple function GUI
2012-09-04	mlPhaser	Multi-Locus Haplotype Phasing
2012-09-04	survAUC	Estimators of prediction accuracy for time-to-event data
2012-09-03	PIPS	Predicted Interval Plots
2012-09-02	pso	Particle Swarm Optimization
2012-09-01	openintro	OpenIntro data sets and supplemental functions
2012-09-01	sca	Simple Component Analysis
2012-09-01	twoStageGwasPower	Compute thresholds and power for two-stage gwas
2012-08-31	clusteval	Evaluation of Clustering Algorithms
2012-08-31	kSamples	K-Sample Rank Tests and their Combinations
2012-08-31	NetComp	Network Generation and Comparison
2012-08-30	evd	Functions for extreme value distributions
2012-08-30	fmt	Variance estimation of FMT method (Fully Moderated t-statistic)
2012-08-30	rbenchmark	Benchmarking routine for R
2012-08-30	Sejong	KoNLP static dictionaries and Sejong project resources
2012-08-29	MetabolAnalyze	Probabilistic latent variable models for metabolomic data
2012-08-29	tightClust	Tight Clustering
2012-08-28	logitnorm	Functions for the logitnormal distribution
2012-08-28	playwith	A GUI for interactive plots using GTK+
2012-08-25	prabclus	Functions for clustering of presence-absence, abundance and multilocus genetic data
2012-08-24	regtest	Regression testing
2012-08-24	rindex	Indexing for R
2012-08-24	SearchTrees	Spatial Search Trees
2012-08-24	seem	Simulation of Ecological and Environmental Models
2012-08-23	gaussDiff	Difference measures for multivariate Gaussian probability density functions
2012-08-23	muStat	Prentice Rank Sum Test and McNemar Test
2012-08-23	Simpsons	Detecting Simpson's Paradox
2012-08-23	smoothmest	Smoothed M-estimators for 1-dimensional location
2012-08-22	LifeTables	A package to implement HMD model life table system
2012-08-22	Rlab	Functions and Datasets Required for ST370 class
2012-08-22	samplesize	Sample size calculation for various t-Tests and Wilcoxon-Test
2012-08-22	sitools	Format a number to a string with SI prefix
2012-08-22	VPdtw	Variable Penalty Dynamic Time Warping
2012-08-21	BigTSP	Top Scoring Pair based methods for classification
2012-08-21	flashClust	Implementation of optimal hierarchical clustering
2012-08-21	labstatR	Libreria del Laboratorio di Statistica con R
2012-08-20	quantchem	Quantitative chemical analysis: calibration and evaluation of results
2012-08-19	cudia	CUDIA Cross-level Imputation
2012-08-19	cxxfunplus	extend cxxfunction by saving the dynamic shared objects
2012-08-19	ddst	Data driven smooth test
2012-08-19	MATTOOLS	Modern Calibration Functions for the Modern Analog Technique (MAT)
2012-08-19	MSG	Data and functions for the book Modern Statistical Graphics
2012-08-19	RPCLR	RPCLR (Random-Penalized Conditional Logistic Regression)
2012-08-17	arrayhelpers	Convenience functions for arrays
2012-08-17	DAKS	Data Analysis and Knowledge Spaces
2012-08-17	fechner	Fechnerian Scaling of Discrete Object Sets
2012-08-17	PresenceAbsence	Presence-Absence Model Evaluation
2012-08-17	SAScii	Import ASCII files directly into R using only a SAS input script
2012-08-16	capwire	Estimates population size from non-invasive sampling
2012-08-16	lava.tobit	LVM with censored and binary outcomes
2012-08-15	treelet	Treelets - an adaptive multi-scale basis for high-dimensional, sparse and unordered data
2012-08-14	aspace	A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
2012-08-14	binGroup	Evaluation and experimental design for binomial group testing
2012-08-14	rHpcc	Interface between HPCC and R
2012-08-13	depth	Depth functions tools for multivariate analysis
2012-08-13	kerdiest	Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions
2012-08-13	SQN	subset quantile normalization
2012-08-13	TauP.R	Earthquake Traveltime Calculations for 1-D Earth Models
2012-08-11	boostSeq	Optimized GWAS cohort subset selection for resequencing studies
2012-08-11	PLIS	Multiplicity control using Pooled LIS statistic
2012-08-11	TSEN	Two-dimensional peak sentinel tool for GC x GC-HRTOFMS
2012-08-10	asympTest	Asymptotic statistic
2012-08-10	IC2	Inequality and Concentration Indices and Curves
2012-08-10	KrigInv	Kriging-based Inversion for Deterministic and Noisy Computer Experiments
2012-08-10	MetaDE	MetaDE: Microarray meta-analysis for differentially expressed gene detection
2012-08-10	obliqueRF	Oblique Random Forests from Recursive Linear Model Splits
2012-08-10	SAFD	Statistical Analysis of Fuzzy Data
2012-08-09	bvenn	A Simple alternative to proportional Venn diagrams
2012-08-09	BVS	Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
2012-08-09	dlmap	Detection Localization Mapping for QTL
2012-08-09	FormalSeries	Elementary arithemtic in formal series rings
2012-08-09	gridExtra	functions in Grid graphics
2012-08-09	modelfree	Model-free estimation of a psychometric function
2012-08-09	p2distance	Welfare's Synthetic Indicator
2012-08-08	AquaEnv	AquaEnv - an integrated development toolbox for aquatic chemical model generation
2012-08-08	fugeR	FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic
2012-08-07	semGOF	Goodness-of-fit indexes for structural equation models
2012-08-06	mcmcse	Monte Carlo Standard Errors for MCMC
2012-08-06	notifyR	Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!)
2012-08-05	deamer	Deconvolution density estimation with adaptive methods for a variable prone to measurement error
2012-08-05	proj4	A simple interface to the PROJ.4 cartographic projections library
2012-08-04	R2PPT	Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient
2012-08-03	crblocks	Categorical Randomized Block Data Analysis
2012-08-02	coexist	Species coexistence modeling and analysis
2012-08-02	crn	Downloads and Builds datasets for Climate Reference Network
2012-08-01	Runiversal	Runiversal - Package for converting R objects to Java variables and XML
2012-08-01	sBF	Smooth Backfitting
2012-08-01	TSAgg	Time series Aggregation
2012-07-31	gumbel	Gumbel copula
2012-07-31	rtape	Manage and manipulate large collections of R objects stored as tape-like files
2012-07-30	EstCRM	Calibrating Parameters for the Samejima's Continuous IRT Model
2012-07-30	HyPhy	Macroevolutionary phylogentic analysis of species trees and gene trees
2012-07-30	rJython	R interface to Python via Jython
2012-07-28	BaylorEdPsych	R Package for Baylor University Educational Psychology Quantitative Courses
2012-07-28	gogarch	Generalized Orthogonal GARCH (GO-GARCH) models
2012-07-27	OneHandClapping	Prediction of condition-specific transcription factor interactions
2012-07-27	PredictABEL	Assessment of risk prediction models
2012-07-26	evir	Extreme Values in R
2012-07-26	iRegression	Regression methods for interval-valued variables
2012-07-26	mbmdr	Model Based Multifactor Dimensionality Reduction
2012-07-26	PlayerRatings	Dynamic Updating Methods For Player Ratings Estimation
2012-07-26	rneos	rneos: XML-RPC Interface to NEOS
2012-07-25	dpmixsim	Dirichlet Process Mixture model simulation for clustering and image segmentation
2012-07-25	txtplot	Text based plots
2012-07-24	plgp	Particle Learning of Gaussian Processes
2012-07-24	relSim	Relative Simulator
2012-07-23	c3net	Infering large-scale gene networks with C3NET
2012-07-23	cggd	Continuous Generalized Gradient Descent
2012-07-23	datamerge	Merging of overlapping and inconsistent data
2012-07-23	drawExpression	Visualising R syntax through graphics
2012-07-23	FindAllRoots	Find all root(s) of the equation and Find root(s) of the equation by dichotomy
2012-07-23	FunCluster	Functional Profiling of Microarray Expression Data
2012-07-23	geneListPie	Profiling a gene list into GOslim or KEGG function pie
2012-07-23	GExMap	A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data
2012-07-23	mcclust	Process an MCMC Sample of Clusterings
2012-07-23	ODB	Open Document Databases (.odb) management
2012-07-23	parmigene	Parallel Mutual Information estimation for Gene Network reconstruction
2012-07-23	schoolmath	Functions and datasets for math used in school
2012-07-23	spa	Implements The Sequential Predictions Algorithm
2012-07-22	GhcnDaily	Downloads and processes GHCN daily
2012-07-20	FRACTION	Numeric number into fraction
2012-07-20	obliclus	Cluster-based factor rotation
2012-07-19	xtermStyle	Basic text formatting using xterm escape sequences
2012-07-18	cncaGUI	Canonical Non-symmetrical Correspondence Analysis in R
2012-07-18	elmNN	Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
2012-07-17	bspmma	bspmma: Bayesian Semiparametric Models for Meta-Analysis
2012-07-16	irr	Various Coefficients of Interrater Reliability and Agreement
2012-07-13	knnGarden	Multi-distance based k-Nearest Neighbors
2012-07-13	lhs	Latin Hypercube Samples
2012-07-12	CensRegMod	Fitting Normal and Student-t censored regression model
2012-07-12	eVenn	eVenn: A powerful tool to compare lists and draw Venn diagrams
2012-07-12	UScensus2010	US Census 2010 Suite of R Packages
2012-07-11	DeducerSurvival	Add Survival Dialogue to Deducer
2012-07-11	HW.pval	Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
2012-07-11	hypothesestest	Confidence Intervals and Tests of Statistical Hypotheses
2012-07-11	msr	Morse-Smale approximation, regression and visualization
2012-07-10	mlbench	Machine Learning Benchmark Problems
2012-07-10	mvtmeta	Multivariate meta-analysis
2012-07-09	extraBinomial	Extra-binomial approach for pooled sequencing data
2012-07-09	SECP	Statistical Estimation of Cluster Parameters (SECP)
2012-07-07	CPE	Concordance Probability Estimates in Survival Analysis
2012-07-07	RaschSampler	Rasch Sampler
2012-07-06	NLRoot	searching for the root of equation
2012-07-06	WMDB	Discriminant Analysis Methods by Weight Mahalanobis Distance and bayes
2012-07-05	ncg	Computes the noncentral gamma function
2012-07-04	p3state.msm	Analyzing survival data
2012-07-03	myepisodes	MyEpisodes RSS/API functions
2012-07-02	CR	Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
2012-07-02	rCUR	CUR decomposition package
2012-07-02	rda	Shrunken Centroids Regularized Discriminant Analysis
2012-06-29	packS4	Toy example of S4 package
2012-06-28	elasticnet	Elastic-Net for Sparse Estimation and Sparse PCA
2012-06-28	RAD	Fit RAD models to biological data
2012-06-25	ada	ada: an R package for stochastic boosting
2012-06-25	ETAS	Modeling earthquake data using Epidemic Type Aftershock Sequence model
2012-06-25	gclus	Clustering Graphics
2012-06-22	adaptMCMC	Implementation of a generic adaptive Monte Carlo Markov Chain sampler
2012-06-22	mra	Analysis of Mark-Recapture data
2012-06-21	ezglm	selects significant non-additive interaction between two variables using fast GLM implementation
2012-06-21	psy	Various procedures used in psychometry
2012-06-20	batchmeans	Consistent Batch Means Estimation of Monte Carlo Standard Errors
2012-06-20	Metrics	Evaluation metrics for machine learning
2012-06-20	RVideoPoker	Play Video Poker with R
2012-06-20	sperrorest	Spatial Error Estimation and Variable Importance
2012-06-19	AMAP.Seq	Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
2012-06-19	MMIX	Model selection uncertainty and model mixing
2012-06-19	sparseLDA	Sparse Discriminant Analysis
2012-06-18	tourrGui	A Tour GUI using gWidgets
2012-06-17	crossmatch	The Cross-match Test
2012-06-15	bisectr	Tools to find bad commits with git bisect
2012-06-15	MLEP	Maximum likelihood estimate of penetrance parameters
2012-06-14	dummies	Create dummy/indicator variables flexibly and efficiently
2012-06-14	sigora	SIGNATURE OVERREPRESENTATION ANALYSIS
2012-06-13	clustergas	A hierarchical clustering method based on genetic algorithms
2012-06-12	paleoTS	Analyze paleontological time-series
2012-06-11	caribou	Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
2012-06-11	extrafontdb	Package for holding the database for the extrafont package
2012-06-09	rrlda	Robust Regularized Linear Discriminant Analysis
2012-06-08	CHCN	Canadian Historical Climate Network
2012-06-07	R330	An R package for Stats 330
2012-06-06	mpMap	Multi-parent RIL genetic analysis
2012-06-05	bios2mds	From BIOlogical Sequences to MultiDimensional Scaling
2012-06-05	qvcalc	Quasi variances for factor effects in statistical models
2012-06-05	RIFS	Random Iterated Function System (RIFS)
2012-06-04	MorseGen	Simple raw data generator based on user-specified summary statistics
2012-06-04	Voss	Generic Voss algorithm (random sequential additions)
2012-06-03	SimpleTable	Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding
2012-06-01	BAS	Bayesian Model Averaging using Bayesian Adaptive Sampling
2012-06-01	hiPOD	hierarchical Pooled Optimal Design
2012-06-01	howmany	A lower bound for the number of correct rejections
2012-06-01	quantregForest	Quantile Regression Forests
2012-06-01	relaxo	Relaxed Lasso
2012-05-31	OIdata	Data sets and supplements (OpenIntro)
2012-05-30	foodweb	visualisation and analysis of food web networks
2012-05-30	intpoint	linear programming solver by the interior point method and graphically (two dimensions)
2012-05-30	nortest	Tests for Normality
2012-05-29	genomicper	Circular Genomic Permutation using GWAS p-values of association
2012-05-28	disp2D	2D Hausdorff and Simplex Dispersion Orderings
2012-05-28	plus	Penalized Linear Unbiased Selection
2012-05-26	multcompView	Visualizations of Paired Comparisons
2012-05-26	OpenCL	Interface allowing R to use OpenCL
2012-05-25	fgof	Fast Goodness-of-fit Test
2012-05-25	Maeswrap	Wrapper functions for MAESTRA/MAESPA
2012-05-24	BinNor	Simultaneous generation of multivariate binary and normal variates
2012-05-24	WeightedPortTest	Weighted Portmanteau Tests for Time Series Goodness-of-fit
2012-05-23	qtutils	Miscellaneous Qt-based utilities
2012-05-22	iterLap	Approximate probability densities by iterated Laplace Approximations
2012-05-19	irtrees	Estimation of Tree-Based Item Response Models
2012-05-18	HTMLUtils	Facilitates automated HTML report creation
2012-05-18	makeProject	Creates an empty package framework for the LCFD format
2012-05-17	googlePublicData	An R library to build Google's Public Data Explorer DSPL Metadata files
2012-05-17	msgps	Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
2012-05-17	QUIC	Regularized sparse inverse covariance matrix estimation
2012-05-17	simSummary	Simulation summary
2012-05-16	bayesm	Bayesian Inference for Marketing/Micro-econometrics
2012-05-16	M3	Reading M3 files
2012-05-16	primer	Functions and data for A Primer of Ecology with R
2012-05-15	bayesclust	Tests/Searches for significant clusters in genetic data
2012-05-15	coxme	Mixed Effects Cox Models
2012-05-15	ri	ri: R package for performing randomization-based inference for experiments
2012-05-14	cumplyr	Extends ddply to allow calculation of cumulative quantities
2012-05-14	cvTools	Cross-validation tools for regression models
2012-05-13	SortableHTMLTables	Turns a data frame into an HTML file containing a sortable table
2012-05-12	frailtyHL	Frailty Models via H-likelihood
2012-05-11	dafs	Data analysis for forensic scientists
2012-05-10	bigml	R bindings for the BigML API
2012-05-09	plmDE	Additive partially linear models for differential gene expression analysis
2012-05-08	AGD	Analysis of Growth Data
2012-05-08	iCluster	Integrative clustering of multiple genomic data types
2012-05-08	SunterSampling	Sunter's sampling design
2012-05-07	CityPlot	Visualization of structure and contents of a database
2012-05-06	clime	Constrained L1-minimization for Inverse (covariance) Matrix Estimation
2012-05-05	discreteMTP	Multiple testing procedures for discrete test statistics
2012-05-05	tensor	Tensor product of arrays
2012-05-04	kappalab	Non-additive measure and integral manipulation functions
2012-05-04	RSeed	borenstein analysis
2012-05-03	CDNmoney	Components of Canadian Monetary and Credit Aggregates
2012-05-03	EvalEst	Dynamic Systems Estimation - extensions
2012-05-02	lassoshooting	L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
2012-05-02	rscproxy	statconn: provides portable C-style interface to R (StatConnector)
2012-05-02	tsne	T-distributed Stochastic Neighbor Embedding for R (t-SNE)
2012-05-01	condmixt	Conditional Density Estimation with Neural Network Conditional Mixtures
2012-04-28	GUniFrac	Generalized UniFrac distances
2012-04-27	weightedKmeans	Weighted KMeans Clustering
2012-04-25	superdiag	R Code for Testing Markov Chain Nonconvergence
2012-04-23	noia	Implementation of the Natural and Orthogonal InterAction (NOIA) model
2012-04-21	labeledLoop	Labeled Loop
2012-04-20	dkDNA	Diffusion kernels on a set of genotypes
2012-04-20	mritc	MRI tissue classification
2012-04-19	bcp	A Package for Performing a Bayesian Analysis of Change Point Problems
2012-04-18	VarEff	Variation of effective population size
2012-04-17	blighty	United Kingdom coastlines
2012-04-17	JohnsonDistribution	Johnson Distribution
2012-04-16	GeneCycle	Identification of Periodically Expressed Genes
2012-04-15	GeneralizedHyperbolic	The Generalized Hyperbolic Distribution
2012-04-15	mseapca	Metabolite set enrichment analysis for factor loading in principal component analysis
2012-04-13	DistributionUtils	Distribution Utilities
2012-04-13	LIHNPSD	Poisson Subordinated Distribution
2012-04-13	scriptests	Transcript-based unit tests that are easy to create and maintain
2012-04-13	track	Track Objects
2012-04-13	VarianceGamma	The Variance Gamma Distribution
2012-04-12	mvnormtest	Normality test for multivariate variables
2012-04-12	reweight	Adjustment of Survey Respondent Weights
2012-04-12	sROC	Nonparametric Smooth ROC Curves for Continuous Data
2012-04-11	mmds	Mixture Model Distance Sampling (mmds)
2012-04-11	waffect	A package to simulate constrained phenotypes under a disease model H1
2012-04-10	aod	Analysis of Overdispersed Data
2012-04-10	BayesDA	Functions and Datasets for the book "Bayesian Data Analysis"
2012-04-10	cccrm	CCC-RM
2012-04-10	elec.strat	Functions for election audits using stratified random samples
2012-04-10	ElemStatLearn	Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
2012-04-10	varbvs	Variational inference for Bayesian variable selection
2012-04-09	negenes	Estimating the number of essential genes in a genome
2012-04-07	gooJSON	Google JSON Data Interpreter for R
2012-04-07	informR	R Tools for Creating Sequence Statistics
2012-04-06	bigdata	Big Data Analytics
2012-04-06	race	Racing methods for the selection of the best
2012-04-05	lordif	Logistic Regression Differential Item Functioning using IRT
2012-04-04	BHH2	Useful Functions for Box, Hunter and Hunter II
2012-04-04	corpora	Statistics and data sets for corpus frequency data
2012-04-04	Fahrmeir	Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz
2012-04-04	SenSrivastava	Datasets from Sen & Srivastava
2012-04-03	changeLOS	Change in LOS
2012-04-03	FinAsym	Classifies implicit trading activity from market quotes and computes the probability of informed trading
2012-04-03	zipfR	Statistical models for word frequency distributions
2012-04-02	apsrtable	apsrtable model-output formatter for social science
2012-04-02	gldist	An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution
2012-03-31	powerSurvEpi	Power and sample size calculation for survival analysis of epidemiological studies
2012-03-31	RcmdrPlugin.epack	Rcmdr plugin for time series
2012-03-30	fossil	Palaeoecological and Palaeogeographical Analysis Tools
2012-03-30	gridDebug	Debugging Grid Graphics
2012-03-30	gridGraphviz	Drawing Graphs with Grid
2012-03-30	nacopula	Nested Archimedean Copulas
2012-03-29	ICSNP	Tools for Multivariate Nonparametrics
2012-03-28	WWGbook	Functions and datasets for WWGbook
2012-03-27	gamair	Data for "GAMs: An Introduction with R"
2012-03-27	GPArotation	GPA Factor Rotation
2012-03-27	setRNG	Set (Normal) Random Number Generator and Seed
2012-03-26	DIRECT	Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
2012-03-26	FBN	FISH Based Normalization and Copy Number inference of SNP microarray data
2012-03-26	mlgt	Multi-Locus Geno-Typing
2012-03-24	MHadaptive	General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
2012-03-23	BSDA	Basic Statistics and Data Analysis
2012-03-23	eigenmodel	Semiparametric factor and regression models for symmetric relational data
2012-03-23	filehashSQLite	Simple key-value database using SQLite
2012-03-23	SPA3G	SPA3G: R package for the method of Li and Cui (2012)
2012-03-23	TRAMPR	TRFLP Analysis and Matching Package for R
2012-03-22	ISwR	Introductory Statistics with R
2012-03-22	mixlow	mixlow method for assessing drug synergism
2012-03-21	lle	Locally linear embedding
2012-03-21	MCAPS	MCAPS data and results
2012-03-21	mvtsplot	Multivariate Time Series Plot
2012-03-21	pseudo	Pseudo - observations
2012-03-21	represent	Determine the representativity of two multidimensional data sets
2012-03-21	stashR	A Set of Tools for Administering SHared Repositories
2012-03-20	BLR	Bayesian Linear Regression
2012-03-20	popbio	Construction and analysis of matrix population models
2012-03-20	QuantPsyc	Quantitative Psychology Tools
2012-03-19	ALS	multivariate curve resolution alternating least squares (MCR-ALS)
2012-03-19	AUCRF	Variable Selection with Random Forest and the Area Under the Curve
2012-03-19	merror	Accuracy and Precision of Measurements
2012-03-19	mgpd	mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
2012-03-19	nnls	The Lawson-Hanson algorithm for non-negative least squares (NNLS)
2012-03-19	qp	q-order partial correlation graph search algorithm
2012-03-18	LCAextend	Latent Class Analysis (LCA) with familial dependence in extended pedigrees
2012-03-18	PSAgraphics	Propensity Score Analysis Graphics
2012-03-17	DeducerPlugInExample	Deducer Plug-in Example
2012-03-17	DeducerPlugInScaling	Reliability and factor analysis plugin
2012-03-16	bmd	Benchmark dose analysis for dose-response data
2012-03-16	R2wd	Write MS-Word documents from R
2012-03-16	truncdist	Truncated Random Variables
2012-03-15	gee	Generalized Estimation Equation solver
2012-03-15	VarSwapPrice	Pricing a variance swap on an equity index
2012-03-14	PKgraph	Model diagnostics for population pharmacokinetic models
2012-03-14	stockPortfolio	Build stock models and analyze stock portfolios
2012-03-12	MDR	Detect gene-gene interactions using multifactor dimensionality reduction
2012-03-12	zipcode	U.S. ZIP Code database for geocoding
2012-03-11	klausuR	Multiple Choice Test Evaluation
2012-03-09	qLearn	Estimation and inference for Q-learning
2012-03-08	eqtl	Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
2012-03-07	JPSurv	Methods for population-based cancer survival analysis
2012-03-07	tabuSearch	R based tabu search algorithm
2012-03-06	malaria.em	EM Estimation of Malaria Haplotype Probabilities from Multiply Infected Human Blood Samples
2012-03-05	soobench	Single Objective Optimization Benchmark Functions
2012-03-04	AmericanCallOpt	This package includes pricing function for selected American call options with underlying assets that generate payouts
2012-03-03	qtbase	Interface between R and Qt
2012-03-03	qtpaint	Qt-based painting infrastructure
2012-03-01	CRM	Continual Reassessment Method (CRM) for Phase I Clinical Trials
2012-03-01	curvetest	The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities
2012-03-01	rBeta2009	The Beta Random Number and Dirichlet Random Vector Generating Functions
2012-02-29	benchden	28 benchmark densities from Berlinet/Devroye (1994)
2012-02-27	superpc	Supervised principal components
2012-02-21	RMallow	Fit Multi-Modal Mallows' Models to ranking data
2012-02-20	barcode	Barcode distribution plots
2012-02-20	ops	Optimal Power Space Transformation
2012-02-20	YaleToolkit	Data exploration tools from Yale University
2012-02-19	perturb	Tools for evaluating collinearity
2012-02-17	capushe	Capushe, data-driven slope estimation and dimension jump
2012-02-17	WideLM	Fitting many skinny linear models to a single data set
2012-02-16	chemometrics	Multivariate Statistical Analysis in Chemometrics
2012-02-15	gamlss.nl	Fitting non linear parametric GAMLSS models
2012-02-13	dispmod	Dispersion models
2012-02-11	idbg	R debugger
2012-02-10	pairheatmap	A tool for comparing heatmaps
2012-02-08	readMLData	Reading machine learning benchmark data sets from different sources in their original format
2012-02-07	udunits2	udunits-2 bindings for R
2012-02-06	futile.paradigm	A framework for working in a functional programming paradigm in R
2012-02-05	SCperf	Supply Chain Perform
2012-02-03	lmbc	Linear Model Bias Correction for RNA-Seq Data
2012-02-02	DiscreteLaplace	Discrete Laplace distribution
2012-02-02	neuRosim	Functions to generate fMRI data including activated data, noise data and resting state data
2012-02-02	rlecuyer	R interface to RNG with multiple streams
2012-01-31	bayesMCClust	Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
2012-01-31	rstream	Streams of random numbers
2012-01-31	vacem	Vaccination Activities Coverage Estimation Model
2012-01-30	Rwinsteps	Running Winsteps in R
2012-01-30	semdiag	Structural equation modeling diagnostics
2012-01-28	geotools	Geo tools
2012-01-28	tlmec	Linear Student-t Mixed-Effects Models with Censored Data
2012-01-27	MIPHENO	Mutant Identification through Probabilistic High throughput Enabled NOrmalization
2012-01-24	CALINE3	R interface to Fortran 77 implementation of CALINE3
2012-01-24	moments	Moments, cumulants, skewness, kurtosis and related tests
2012-01-24	occ	Estimates PET neuroreceptor occupancies
2012-01-24	registry	Registry infrastructure
2012-01-23	rasclass	Supervised Raster Image Classification
2012-01-22	SEER2R	reading and writing SEER*STAT data files
2012-01-21	fastmatch	Fast match() function
2012-01-20	apple	Approximate Path for Penalized Likelihood Estimators
2012-01-18	cytoDiv	Cytometric diversity indices
2012-01-17	ifa	Independent Factor Analysis
2012-01-17	RMySQL	R interface to the MySQL database
2012-01-17	rngwell19937	WELL19937a random number generator implemented with 53 bit output
2012-01-16	DBGSA	methods of distance-based gene set functional enrichment analysis
2012-01-15	GillespieSSA	Gillespie's Stochastic Simulation Algorithm (SSA)
2012-01-15	Lmoments	L-moments and quantile mixtures
2012-01-15	PKPDmodels	Pharmacokinetic/pharmacodynamic models
2012-01-14	cepp	Context Driven Exploratory Projection Pursuit
2012-01-13	eiPack	eiPack: Ecological Inference and Higher-Dimension Data Management
2012-01-13	lga	Tools for linear grouping analysis (LGA)
2012-01-13	pgam	Poisson-Gamma Additive Models
2012-01-13	randaes	Random number generator based on AES cipher
2012-01-12	intReg	Interval Regression
2012-01-12	lisp	List-processing à la SRFI-1
2012-01-12	rstiefel	Random orthonormal matrix generation on the Stiefel manifold
2012-01-09	wccsom	SOM networks for comparing patterns with peak shifts
2012-01-07	events	Store and manipulate event data
2012-01-07	latticeDensity	Density estimation and nonparametric regression on irregular regions
2012-01-07	ucminf	General-purpose unconstrained non-linear optimization
2012-01-06	rportfolios	Random portfolio generation
2012-01-05	hett	Heteroscedastic t-regression
2012-01-05	MImix	Mixture summary method for multiple imputation
2012-01-04	mcbiopi	Matrix Computation Based Identification Of Prime Implicants
2012-01-03	AWS.tools	R package to use Amazon Web Services
2012-01-03	GOGANPA	GO-Functional-Network-based Gene-Set-Analysis
2012-01-03	rpsychi	Statistics for psychiatric research
2011-12-30	cin	Causal Inference for Neuroscience
2011-12-30	fame	Interface for FAME time series database
2011-12-30	wasim	Visualisation and analysis of output files of the hydrological model WASIM
2011-12-28	ADGofTest	Anderson-Darling GoF test
2011-12-28	biglars	Scalable Least-Angle Regression and Lasso
2011-12-27	onion	octonions and quaternions
2011-12-23	curvHDR	curvHDR filtering of flow cytometry samples
2011-12-23	ktspair	k-Top Scoring Pairs for Microarray Classification
2011-12-21	kriging	Ordinary Kriging
2011-12-20	nFactors	Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test
2011-12-19	Holidays	Holiday and halfday data, for use with the TimeWarp package
2011-12-16	DECIDE	DEComposition of Indirect and Direct Effects
2011-12-16	spaceExt	Extension of SPACE
2011-12-15	ascrda	Augmented SCRDA
2011-12-13	objectProperties	A factory of self-describing properties
2011-12-11	EMC	Evolutionary Monte Carlo (EMC) algorithm
2011-12-11	EMCC	Evolutionary Monte Carlo (EMC) methods for clustering
2011-12-11	SMC	Sequential Monte Carlo (SMC) Algorithm
2011-12-09	PairViz	Visualization using Eulerian tours and Hamiltonian decompositions
2011-12-08	bamdit	Bayesian Meta-Analysis of diagnostic test data
2011-12-08	ThresholdROC	Optimum threshold estimation based on cost function in a two and three state setting
2011-12-03	base64	Base 64 encoder/decoder
2011-12-02	supclust	Supervised Clustering of Predictor Variables such as Genes
2011-12-01	OrdMonReg	Compute least squares estimates of one bounded or two ordered isotonic regression curves
2011-11-30	plugdensity	Plug-in Kernel Density Estimation
2011-11-29	modehunt	Multiscale Analysis for Density Functions
2011-11-29	qtlbook	Datasets for the R/qtl book
2011-11-27	abind	Combine multi-dimensional arrays
2011-11-27	RSVGTipsDevice	An R SVG graphics device with dynamic tips and hyperlinks
2011-11-27	tkrgl	TK widget tools for rgl package
2011-11-25	mpm	Multivariate Projection Methods
2011-11-24	WMCapacity	GUI implementing Bayesian working memory models
2011-11-22	Survgini	The Gini concentration test for survival data
2011-11-21	migui	Graphical User Interface of the mi Package
2011-11-19	ProfileLikelihood	Profile Likelihood for a Parameter in Commonly Used Statistical Models
2011-11-19	tkrplot	TK Rplot
2011-11-17	liso	Fitting lasso penalised additive isotone models
2011-11-16	PhysicalActivity	Process Physical Activity Accelerometer Data
2011-11-16	SynergizeR	Interface to The Synergizer service for translating between sets of biological identifiers
2011-11-16	SyNet	Inference and Analysis of Sympatry Networks
2011-11-13	itsmr	Time series analysis package for students
2011-11-13	mvProbit	Multivariate Probit Models
2011-11-10	recommenderlabBX	Book-Crossing Dataset (BX) for recommenderlab
2011-11-10	recommenderlabJester	Jester Dataset for recommenderlab
2011-11-07	RArcInfo	Functions to import data from Arc/Info V7.x binary coverages
2011-11-04	cmrutils	Misc Functions of the Center for the Mathematical Research
2011-11-04	NPsimex	Nonparametric Smoothing for contaminated data using Simulation-Extrapolation
2011-11-03	LSD	Lots of Superior Depictions
2011-11-03	mail	Sending Email Notifications from R
2011-11-02	EL	Two-sample Empirical Likelihood
2011-11-02	nlrwr	Nonlinear regression with R
2011-11-02	rationalfun	Manipulation of Rational Functions
2011-10-28	objectSignals	objectSignals
2011-10-27	alr3	Data to accompany Applied Linear Regression 3rd edition
2011-10-26	emma	Evolutionary model-based multiresponse approach
2011-10-23	AnnotLists	AnnotLists: A tool to annotate multiple lists from a specific annotation file
2011-10-23	webvis	Create graphics for the web from R
2011-10-20	lspls	LS-PLS Models
2011-10-20	MultEq	Multiple Equivalence Tests and Simultaneous Confidence Intervals
2011-10-17	relimp	Relative Contribution of Effects in a Regression Model
2011-10-10	RJaCGH	Reversible Jump MCMC for the analysis of CGH arrays
2011-10-04	remix	Remix your data
2011-09-30	dhglm	Double Hierarchical Generalized Linear Models
2011-09-29	ascii	Export R objects to several markup languages
2011-09-29	stremo	Functions to help the process of learning structural equation modelling
2011-09-10	McParre	Run a Regenerative Markov chain in Parallel on a Cluster
2011-09-10	NBDdirichlet	NBD-Dirichlet model of consumer buying behavior for marketing research
2011-09-08	mseq	Modeling non-uniformity in short-read rates in RNA-Seq data
2011-09-07	ISOweek	Week of the year and weekday according to ISO 8601
2011-09-02	fork	R functions for handling multiple processes
2011-08-30	rJavax	rJava extensions
2011-08-28	viopoints	1-D Scatter Plots with Jitter Using Kernel Density Estimates
2011-08-18	ieeeround	Functions to set and get the IEEE rounding mode
2011-08-17	features	Feature Extraction for Discretely-Sampled Functional Data
2011-08-14	RcmdrPlugin.doex	Rcmdr plugin for Stat 4309 course
2011-08-12	CITAN	CITation ANalysis toolpack
2011-08-12	dfoptim	Derivative-free Optimization
2011-08-12	fun	Use R for Fun
2011-08-12	hybridHclust	Hybrid hierarchical clustering
2011-08-12	MCMChybridGP	Hybrid Markov chain Monte Carlo using Gaussian Processes
2011-08-10	venneuler	Venn and Euler Diagrams
2011-08-09	binomTools	Performing diagnostics on binomial regression models
2011-08-08	lmmfit	Goodness-of-fit-measures for linear mixed models with one-level-grouping
2011-08-08	mxkssd	Efficient mixed-level k-circulant supersaturated designs
2011-08-08	REEMtree	Regression Trees with Random Effects for Longitudinal (Panel) Data
2011-08-05	DAGGER	Consensus genetic maps
2011-08-05	mkssd	Efficient multi-level k-circulant supersaturated designs
2011-08-04	SPIAssay	A genetic-based assay for the identification of cell lines
2011-07-28	dae	Functions useful in the design and ANOVA of experiments
2011-07-28	r2lh	R to LaTeX and HTML
2011-07-28	soma	General-purpose optimisation with the Self-Organising Migrating Algorithm
2011-07-27	fwdmsa	Forward search for Mokken scale analysis
2011-07-23	CLSOCP	A smoothing Newton method SOCP solver
2011-07-23	minimax	Minimax distribution family
2011-07-23	s4vd	Biclustering via sparse singular value decomposition incorporating stability selection
2011-07-19	pixmap	Bitmap Images (“Pixel Maps”)
2011-07-18	B2Z	Bayesian Two-Zone Model
2011-07-18	MNM	Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
2011-07-06	GPseq	gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
2011-07-06	limitplot	Jitter/CI Plot with Ordered Points Below the Limit of Detection
2011-06-29	enrichvs	Enrichment assessment of virtual screening approaches
2011-06-29	samr	SAM: Significance Analysis of Microarrays
2011-06-17	LGS	simulating Linkage Group Selection (LGS)
2011-06-17	RColorBrewer	ColorBrewer palettes
2011-06-15	longmemo	Statistics for Long-Memory Processes (Jan Beran) – Data and Functions
2011-06-15	MetaPCA	MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
2011-06-03	orthogonalsplinebasis	Orthogonal Bspline Basis Functions
2011-05-31	reshapeGUI	A GUI for the reshape2 and plyr packages
2011-05-29	GANPA	Gene Association Network-based Pathway Analysis
2011-05-26	gtcorr	Calculate efficiencies of group testing algorithms with correlated responses
2011-05-18	Kendall	Kendall rank correlation and Mann-Kendall trend test
2011-05-18	pear	Package for Periodic Autoregression Analysis
2011-05-17	gcExplorer	Graphical Cluster Explorer
2011-05-11	COMPoissonReg	Conway-Maxwell Poisson (COM-Poisson) Regression
2011-05-02	phyext	An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
2011-04-26	cobs	COBS – Constrained B-splines (Sparse matrix based)
2011-04-26	MAPLES	Smoothed age profile estimation
2011-04-24	fftw	Fast FFT and DCT based on FFTW
2011-04-24	SPECIES	Statistical package for species richness estimation
2011-04-15	lmmlasso	Linear mixed-effects models with Lasso
2011-04-13	brew	Templating Framework for Report Generation
2011-04-09	NRAIA	Data sets from "Nonlinear Regression Analysis and Its Applications"
2011-04-06	lcda	Latent Class Discriminant Analysis
2011-03-29	penalizedLDA	Penalized classification using Fisher's linear discriminant
2011-03-26	BaBooN	Bayesian Bootstrap Predictive Mean Matching - Multiple and single imputation for discrete data
2011-03-26	qualV	Qualitative Validation Methods
2011-03-21	metacor	Meta-analysis of correlation coefficients
2011-03-09	compeir	Event-specific incidence rates for competing risks data
2011-02-24	fpca	Restricted MLE for Functional Principal Components Analysis
2011-02-22	MUCflights	Munich Franz-Josef-Strauss Airport Pattern Analysis
2011-02-21	beadarrayMSV	Analysis of Illumina BeadArray SNP data including MSV markers
2011-02-18	Meth27QC	Meth27QC: sample quality analysis, and sample control analysis
2011-02-11	PoMoS	Polynomial (ordinary differential equation) Model Search
2011-01-29	cmaes	Covariance Matrix Adapting Evolutionary Strategy
2011-01-24	outliers	Tests for outliers
2011-01-23	multxpert	Common Multiple Testing Procedures and Gatekeeping Procedures
2011-01-20	darts	Statistical Tools to Analyze Your Darts Game
2011-01-15	esotericR	esotericR articles from lemnica.com
2011-01-13	SVMMaj	SVMMaj algorithm
2011-01-11	scout	Implements the Scout method for Covariance-Regularized Regression
2011-01-11	topmodel	Implementation of the hydrological model TOPMODEL in R
2011-01-03	english	Translate integers into English
2011-01-03	extremevalues	Univariate outlier detection
2011-01-03	factualR	thin wrapper for the Factual.com server API
2011-01-03	neariso	Near-Isotonic Regression
2011-01-03	reliaR	Package for some probability distributions
2010-12-16	orQA	Order Restricted Assessment Of Microarray Titration Experiments
2010-12-06	dcv	Conventional Cross-validation statistics for climate-growth model
2010-12-01	tensorA	Advanced tensors arithmetic with named indices
2010-11-08	RMC	Functions for fitting Markov models
2010-11-03	aster2	Aster Models
2010-10-28	varSelRF	Variable selection using random forests
2010-10-27	inference	Functions to extract inferential values of a fitted model object
2010-10-26	RunuranGUI	A GUI for the UNU.RAN random variate generators
2010-10-20	fANCOVA	Nonparametric Analysis of Covariance
2010-10-04	rocc	ROC based classification
2010-10-01	genepi	Genetic Epidemiology Design and Inference
2010-09-29	factorQR	Bayesian quantile regression factor models
2010-09-17	laercio	Duncan test, Tukey test and Scott-Knott test
2010-09-15	rpud	R functions for computation on GPU
2010-09-09	SE.IGE	Standard errors of estimated genetic parametes
2010-09-02	SMCP	Smoothed minimax concave penalization (SMCP) method for genome-wide association studies
2010-08-25	ecoreg	Ecological regression using aggregate and individual data
2010-08-23	PET	Simulation and Reconstruction of PET Images
2010-08-11	classGraph	Construct Graphs of S4 Class Hierarchies
2010-08-08	psychometric	Applied Psychometric Theory
2010-08-06	hexView	Viewing Binary Files
2010-07-31	MVpower	Give power for a given effect size using multivariate classification methods
2010-07-30	FieldSim	Random fields simulations
2010-07-29	EnQuireR	A package dedicated to questionnaires
2010-07-29	perm	Exact or Asymptotic permutation tests
2010-07-26	stepPlr	L2 penalized logistic regression with a stepwise variable selection
2010-07-24	MCPMod	Design and Analysis of Dose-Finding Studies (see also DoseFinding package)
2010-07-24	PolynomF	Polynomials in R
2010-07-07	mlmmm	ML estimation under multivariate linear mixed models with missing values
2010-06-25	RNCBIEUtilsLibs	EUtils libraries for use in the R environment
2010-06-20	ttutils	Utility functions
2010-05-23	SEL	Semiparametric elicitation
2010-05-22	rrules	Generic rule engine for R
2010-05-07	cgh	Microarray CGH analysis using the Smith-Waterman algorithm
2010-05-07	imprProbEst	Minimum distance estimation in an imprecise probability model
2010-05-01	ProDenICA	Product Density Estimation for ICA using tilted Gaussian density estimates
2010-04-25	BMN	The pseudo-likelihood method for pairwise binary markov networks
2010-04-14	identity	Jacquard Condensed Coefficients of Identity
2010-04-14	space	Sparse PArtial Correlation Estimation
2010-04-13	nws	R functions for NetWorkSpaces and Sleigh
2010-04-12	tpr	Temporal Process Regression
2010-04-07	som	Self-Organizing Map
2010-04-06	futile.options	Futile options management
2010-04-05	AIM	AIM: adaptive index model
2010-04-03	polycor	Polychoric and Polyserial Correlations
2010-04-02	endogMNP	R Package for Fitting Multinomial Probit Models with Endogenous Selection
2010-04-02	pmlr	Penalized Multinomial Logistic Regression
2010-03-16	haarfisz	Software to perform Haar Fisz transforms
2010-03-09	rsprng	R interface to SPRNG (Scalable Parallel Random Number Generators)
2010-03-08	far	Modelization for Functional AutoRegressive processes
2010-02-16	ic50	Standardized high-throughput evaluation of cell-based compound screens
2010-02-11	CausalGAM	Estimation of Causal Effects with Generalized Additive Models
2010-02-07	stam	Spatio-Temporal Analysis and Modelling
2010-02-03	GWRM	GWRM
2010-02-03	scrapeR	Tools for Scraping Data from HTML and XML Documents
2010-02-01	dynamicGraph	dynamicGraph
2010-01-28	fisheyeR	Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
2010-01-26	BoSSA	a Bunch of Structure and Sequence Analysis
2010-01-13	blockmodeling	An R package for Generalized and classical blockmodeling of valued networks
2010-01-10	HMM	HMM - Hidden Markov Models
2010-01-04	GSA	Gene set analysis
2010-01-03	mix	Estimation/multiple Imputation for Mixed Categorical and Continuous Data
2009-12-24	histogram	Construction of regular and irregular histograms with different options for automatic choice of bins
2009-12-17	jointDiag	Joint Approximate Diagonalization of a set of square matrices
2009-12-17	SampleSizeProportions	Calculating sample size requirements when estimating the difference between two binomial proportions
2009-12-16	marginalmodelplots	Marginal Mean Model Plots
2009-12-03	datamap	A system for mapping foreign objects to R variables and environments
2009-11-25	LogitNet	Infer network based on binary arrays using regularized logistic regression
2009-11-22	dvfBm	Discrete variations of a fractional Brownian motion
2009-11-13	corcounts	Generate correlated count random variables
2009-10-27	rela	Item Analysis Package with Standard Errors
2009-10-16	adaptTest	Adaptive two-stage tests
2009-10-15	bcv	Cross-Validation for the SVD (Bi-Cross-Validation)
2009-10-12	grouped	Regression Analysis of Grouped and Coarse Data
2009-10-11	moduleColor	Basic module functions
2009-10-11	packClassic	Toy example of Pack Classic
2009-10-08	PKtools	unified computational interfaces for pop PK
2009-09-28	EQL	Extended-Quasi-Likelihood-Function (EQL)
2009-09-23	HyperbolicDist	The hyperbolic distribution
2009-09-06	its	Irregular Time Series
2009-08-30	km.ci	Confidence intervals for the Kaplan-Meier estimator
2009-08-08	crantastic	Various R tools for http://crantastic.org/
2009-08-02	latdiag	Draws diagrams useful for checking latent scales
2009-06-29	PearsonICA	Independent component analysis using score functions from the Pearson system
2009-06-29	spatcounts	Spatial count regression
2009-06-14	svcm	2d and 3d Space-Varying Coefficient Models
2009-06-08	HybridMC	Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
2009-06-07	cghFLasso	Detecting hot spot on CGH array data with fused lasso regression
2009-06-04	bootStepAIC	Bootstrap stepAIC
2009-05-18	odfWeave.survey	Support for odfWeave on the survey package
2009-05-05	leaps	regression subset selection
2009-05-05	luca	Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
2009-05-05	SEMModComp	Model Comparisons for SEM
2009-04-28	mcsm	Functions for Monte Carlo Methods with R
2009-04-15	uniCox	Univarate shrinkage prediction in the Cox model
2009-03-24	ars	Adaptive Rejection Sampling
2009-03-23	plotpc	Plot principal component histograms around a scatter plot
2009-03-01	clusterRepro	Reproducibility of gene expression clusters
2009-02-25	hdeco	Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
2009-02-25	sac	Semiparametric Analysis of Changepoint
2009-02-24	spe	Stochastic Proximity Embedding
2009-02-01	CreditMetrics	Functions for calculating the CreditMetrics risk model
2009-02-01	Reliability	Functions for estimating parameters in software reliability models
2009-01-30	ETC	Equivalence to control
2009-01-29	convexHaz	Nonparametric MLE/LSE of convex hazard
2009-01-29	kin.cohort	Analysis of kin-cohort studies
2009-01-17	remMap	Regularized Multivariate Regression for Identifying Master Predictors
2008-12-16	mixPHM	Mixtures of proportional hazard models
2008-11-08	foba	greedy variable selection
2008-10-28	kzs	Kolmogorov-Zurbenko Spatial Smoothing and Applications
2008-10-02	expert	Modeling without data using expert opinion
2008-09-28	goalprog	Weighted and lexicographical goal programming and optimization
2008-09-08	pack	Convert values to/from raw vectors
2008-09-03	hlr	Hidden Logistic Regression
2008-08-13	RM2	Revenue Management and Pricing Package
2008-07-16	bark	Bayesian Additive Regresssion Kernels
2008-06-23	SASPECT	Significant AnalysiS of PEptide CounTs
2008-06-09	LDtests	Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
2008-05-02	boa	Bayesian Output Analysis Program (BOA) for MCMC
2008-05-02	simpleboot	Simple Bootstrap Routines
2008-04-29	poilog	Poisson lognormal and bivariate Poisson lognormal distribution
2007-11-06	mFilter	Miscellaneous time series filters
2007-10-16	fuzzyFDR	Exact calculation of fuzzy decision rules for multiple testing
2006-08-19	powell	Powell's UObyQA algorithm
2006-05-24	allelic	A fast, unbiased and exact allelic exact test
2006-03-30	BayesValidate	BayesValidate Package
2006-03-15	coxrobust	Robust Estimation in Cox Model
2005-10-29	vioplot	Violin plot