pez: Phylogenetics for the Environmental Sciences

Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('shape', 'evenness', 'dispersion', and 'dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').

Version: 0.9-0
Depends: ape (≥ 3.1-4)
Imports: caper (≥ 0.5-2), picante (≥ 1.6-2), quantreg (≥ 5.05), mvtnorm (≥ 1.0-0), vegan (≥ 2.0-10), PVR (≥ 0.2.1), ade4 (≥ 1.6-2), apTreeshape (≥ 1.4-5), FD (≥ 1.0-12)
Suggests: knitr (≥ 1.6), plotrix (≥ 3.5-7), methods (≥ 3.1.1)
Published: 2014-11-08
Author: William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Caroline Tucker, Steve C. Walker, Matthew R. Helmus
Maintainer: William D. Pearse <will.pearse at>
License: GPL-3
NeedsCompilation: no
CRAN checks: pez results


Reference manual: pez.pdf
Vignettes: pez-intro
Package source: pez_0.9-0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: not available, r-oldrel: pez_0.9-0.tgz
OS X Mavericks binaries: r-release: pez_0.9-0.tgz