phangorn: Phylogenetic analysis in R

Phylogenetic analysis in R (Estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation)

Version: 1.99-11
Depends: R (≥ 3.0.0), ape (≥ 3.1-4)
Imports: quadprog, igraph (≥ 0.6), Matrix, fastmatch, parallel, rgl
Suggests: seqLogo, seqinr, xtable, flashClust
Published: 2014-11-11
Author: Klaus Schliep, Emmanuel Paradis
Maintainer: Klaus Schliep <klaus.schliep at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: phangorn citation info
Materials: README NEWS
In views: Genetics, Phylogenetics
CRAN checks: phangorn results


Reference manual: phangorn.pdf
Vignettes: Ancestral sequence Reconstruction
Constructing phylogenetic trees
Advanced features
Package source: phangorn_1.99-11.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: phangorn_1.99-7.tgz, r-oldrel: phangorn_1.99-7.tgz
OS X Mavericks binaries: r-release: phangorn_1.99-11.tgz
Old sources: phangorn archive

Reverse dependencies:

Reverse imports: coalescentMCMC, corHMM, OUwie, paleotree, phytools, poppr, RADami, recluster, SeqFeatR