swamp: Visualization, analysis and adjustment of high-dimensional data
in respect to sample annotations
The package contains functions to connect the structure of
the data with the information on the samples. Three types of
associations are covered: 1. linear model of principal
components. 2. hierarchical clustering analysis. 3.
distribution of features-sample annotation associations.
Additionally, the inter-relation between sample annotations can
be analyzed. Simple methods are provided for the correction of
batch effects and removal of principal components.
| Version: |
1.2.3 |
| Depends: |
impute, amap, gplots, MASS |
| Published: |
2013-03-13 |
| Author: |
Martin Lauss |
| Maintainer: |
Martin Lauss <martin.lauss at med.lu.se> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
swamp results |
Downloads: