CRAN Package Check Results for Package Rcell

Last updated on 2015-02-05 23:50:33.

Check Details

Version: 1.2-6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘Hmisc’ ‘R.matlab’ ‘chron’ ‘hopach’ ‘splancs’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Unexported objects imported by ':::' calls:
     ‘ggplot2:::Geom’ ‘ggplot2:::Position’ ‘ggplot2:::Stat’
     See the note in ?`:::` about the use of this operator.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2-6
Check: R code for possible problems
Result: NOTE
    .append.panel.idxyz: no visible global function definition for
     ‘summarise’
    .ordered.interaction: no visible global function definition for
     ‘sort_df’
    aggregate.cell.data: no visible global function definition for
     ‘is.formula’
    aggregate.cell.data: no visible global function definition for
     ‘as.quoted’
    aggregateBy.cell.data: no visible global function definition for
     ‘as.quoted’
    aggregateBy.data.frame: no visible global function definition for
     ‘as.quoted’
    aggregateBy.default: no visible global function definition for
     ‘as.quoted’
    append.oif.time: no visible global function definition for ‘chron’
    append.oif.time: no visible global function definition for ‘hours’
    append.oif.time: no visible global function definition for ‘minutes’
    append.oif.time: no visible global function definition for ‘seconds’
    append.z.scan: no visible global function definition for ‘splat’
    calculate.features: no visible global function definition for ‘areapl’
    cell.hclust: no visible global function definition for ‘colwise’
    cell.hclust: no visible global function definition for ‘distancematrix’
    chclust: no visible global function definition for ‘colwise’
    chclust: no visible global function definition for ‘distancematrix’
    ciciply: no visible global function definition for ‘colwise’
    cimage.cell.image: no visible global function definition for
     ‘is.formula’
    cimage.cell.image: no visible global function definition for ‘rlply’
    cplot: no visible global function definition for ‘is.formula’
    cplot: no visible global function definition for ‘compact’
    create.cellID.mask: no visible global function definition for ‘rename’
    creshape: no visible global function definition for ‘melt.data.frame’
    load.cellProfiler.data: no visible global function definition for
     ‘readMat’
    load.cellProfiler.data: no visible global function definition for
     ‘rename’
    load.cellProfiler.data: no visible global function definition for
     ‘summarise’
    load.cellX.data: no visible global function definition for ‘rename’
    print.summary.cell.data: no visible binding for global variable ‘desc’
    rename_aes: no visible global function definition for ‘rename’
    reshape.cell.data: no visible global function definition for
     ‘melt.data.frame’
    subset.cell.image: no visible global function definition for ‘arrange’
    timecourse_bootstrap: no visible global function definition for ‘rdply’
    timecourse_bootstrap: no visible global function definition for
     ‘colwise’
    transform.cell.data: no visible global function definition for
     ‘summarise’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.2-6
Check: for code/documentation mismatches
Result: WARN
    Codoc mismatches from documentation object 'vplayout':
    grid.layout
     Code: function(nrow = 1, ncol = 1, widths = unit(rep_len(1, ncol),
     "null"), heights = unit(rep_len(1, nrow), "null"),
     default.units = "null", respect = FALSE, just =
     "centre")
     Docs: function(nrow = 1, ncol = 1, widths = unit(rep(1, ncol),
     "null"), heights = unit(rep(1, nrow), "null"),
     default.units = "null", respect = FALSE, just =
     "centre")
     Mismatches in argument default values:
     Name: 'widths' Code: unit(rep_len(1, ncol), "null") Docs: unit(rep(1, ncol), "null")
     Name: 'heights' Code: unit(rep_len(1, nrow), "null") Docs: unit(rep(1, nrow), "null")
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.2-6
Check: dependencies in R code
Result: NOTE
    Unexported objects imported by ':::' calls:
     ‘ggplot2:::Geom’ ‘ggplot2:::Position’ ‘ggplot2:::Stat’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2-6
Check: package dependencies
Result: ERROR
    Package required but not available: ‘EBImage’
    
    Package suggested but not available for checking: ‘hopach’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.2-6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘hopach’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.2-6
Check: R code for possible problems
Result: NOTE
    cell.hclust: no visible global function definition for ‘distancematrix’
    chclust: no visible global function definition for ‘distancematrix’
Flavor: r-release-osx-x86_64-snowleopard