CRAN Package Check Results for Maintainer ‘Berkley Shands <bshands at dom.wustl.edu>’

Last updated on 2015-02-05 23:50:49.

Package ERROR WARN NOTE OK
Actigraphy 14
bingat 15
HMP 14 1
HMPTrees 1 14

Package Actigraphy

Current CRAN status: NOTE: 14

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘SDMTools’ ‘fda’ ‘lattice’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    Ftest: no visible global function definition for ‘fRegress’
    Ftest: no visible global function definition for ‘Fstat.fd’
    Ftest: no visible global function definition for ‘is.fd’
    cont_flm_plot: no visible global function definition for
     ‘legend.gradient’
    fda.smoothdata: no visible global function definition for
     ‘create.fourier.basis’
    fda.smoothdata: no visible global function definition for
     ‘create.bspline.basis’
    fda.smoothdata: no visible global function definition for ‘fdPar’
    fda.smoothdata: no visible global function definition for
     ‘smooth.basis’
    flm_cate: no visible global function definition for
     ‘create.fourier.basis’
    flm_cate: no visible global function definition for
     ‘create.bspline.basis’
    flm_cate: no visible global function definition for ‘fdPar’
    flm_cate: no visible global function definition for ‘fRegress’
    flm_cate: no visible global function definition for ‘fRegress.stderr’
    flm_ftest: no visible global function definition for
     ‘create.fourier.basis’
    flm_ftest: no visible global function definition for
     ‘create.bspline.basis’
    flm_ftest: no visible global function definition for ‘fdPar’
    flm_ftest: no visible global function definition for ‘fRegress’
    flm_ftest: no visible global function definition for ‘fRegress.stderr’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘SDMTools’ ‘fda’ ‘lattice’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package bingat

Current CRAN status: OK: 15

Package HMP

Current CRAN status: NOTE: 14, OK: 1

Version: 1.3.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MCMCpack’ ‘dirmult’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.3.1
Check: R code for possible problems
Result: NOTE
    Dirichlet.multinomial : <anonymous>: no visible global function
     definition for ‘rdirichlet’
    Xdc.statistics : <anonymous>: no visible global function definition for
     ‘dirmult’
    Xdc.statistics: no visible global function definition for ‘dirmult’
    Xmc.statistics : <anonymous>: no visible global function definition for
     ‘ginv’
    Xoc.statistics : <anonymous>: no visible global function definition for
     ‘dirmult’
    Xoc.statistics: no visible global function definition for ‘equalTheta’
    Xsc.statistics: no visible global function definition for ‘ginv’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MCMCpack’ ‘dirmult’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Package HMPTrees

Current CRAN status: ERROR: 1, NOTE: 14

Version: 1.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘HMP’ ‘doParallel’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Package in Depends field not imported from: ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    compareTwoDataSets: no visible global function definition for
     ‘makeCluster’
    compareTwoDataSets: no visible global function definition for
     ‘registerDoParallel’
    compareTwoDataSets: no visible global function definition for ‘%dopar%’
    compareTwoDataSets: no visible global function definition for ‘foreach’
    compareTwoDataSets: no visible global function definition for ‘icount’
    compareTwoDataSets: no visible global function definition for
     ‘stopCluster’
    generateTree: no visible global function definition for ‘dirmult’
    generateTree: no visible global function definition for ‘DM.MoM’
    generateTree: no visible global function definition for
     ‘Dirichlet.multinomial’
    traverseTree: no visible global function definition for ‘read.tree’
    traverseTree: no visible global function definition for
     ‘collapse.singles’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘ape’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard