CRAN Package Check Results for Package cggd

Last updated on 2015-02-05 23:50:20.

Check Details

Version: 0.8
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .project
    These were most likely included in error. See section ‘Package
    structure’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘try1.r’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.8
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.cggd predict.cggd
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.8
Check: R code for possible problems
Result: NOTE
    get.switch.time: warning in uniroot(f = switch.func, int =
     c(last_boundary, boundary), lower = last_boundary, upper = boundary,
     maxiter = 1000, tol = tol, e): partial argument match of ‘int’ to
     ‘interval’
    plot.cggd: warning in axis(4, at = b[nrow(b), ], label = paste(cnums),
     cex = 0.8, adj = 0): partial argument match of ‘label’ to ‘labels’
    plot.cggd: no visible global function definition for ‘gen.beta’
    plotCVcggd: no visible binding for global variable ‘cv’
    plotCVcggd: no visible binding for global variable ‘cv.error’
    predict.cggd: no visible binding for global variable ‘max.tk’
    predict.cggd: no visible global function definition for ‘gen.beta’
    
    Found the following calls to attach():
    File ‘cggd/R/cggd.r’:
     attach(cv.lars.object)
    See section ‘Good practice’ in ‘?attach’.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.8
Check: Rd line widths
Result: NOTE
    Rd file 'cggd-internal.Rd':
     \usage lines wider than 90 characters:
     get.switch.time(switch.func,e, boundary=0,terminate_value=1e15,tol = .Machine$double.eps^0.5, fctr=1e8, TRACE=FALSE)
     cggd.mgd.one.step(x, y, a.set, beta_init, t1 = 1, alpha1 = 0, alpha2 = 0, w = 1, tau = 1, tautil = -1, eps = -1, TRACE=FALSE, fctr=1 ... [TRUNCATED]
     cggd.trr.one.step(x, y, a.set, beta_init, t1 = 1, t0 = 1, tau = 1, tautil = -1, eps = -1, fctr=1e8)
    
    Rd file 'plot.cggd.Rd':
     \usage lines wider than 90 characters:
     plot.cggd(x, steps=5, breaks = TRUE, first_k=1,last_k=Inf, xvar=c("step","t"),omit.zeros = TRUE, eps = 1e-10, ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 0.8
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.cggd':
     ‘plot.cggd’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.8
Check: R code for possible problems
Result: NOTE
    get.switch.time: warning in uniroot(f = switch.func, int =
     c(last_boundary, boundary), lower = last_boundary, upper = boundary,
     maxiter = 1000, tol = tol, e): partial argument match of 'int' to
     'interval'
    plot.cggd: warning in axis(4, at = b[nrow(b), ], label = paste(cnums),
     cex = 0.8, adj = 0): partial argument match of 'label' to 'labels'
    plot.cggd: no visible global function definition for ‘gen.beta’
    plotCVcggd: no visible binding for global variable ‘cv’
    plotCVcggd: no visible binding for global variable ‘cv.error’
    predict.cggd: no visible binding for global variable ‘max.tk’
    predict.cggd: no visible global function definition for ‘gen.beta’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.8
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.cggd':
     ‘plot.cggd’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64