CRAN Package Check Results for Maintainer ‘P Lafaye de Micheaux <lafaye at dms.umontreal.ca>’

Last updated on 2015-02-05 23:50:59.

Package ERROR WARN NOTE OK
AnalyzeFMRI 7 8
asympTest 14
CompQuadForm 14
ConvergenceConcepts 15
groc 5 10
IndependenceTests 15
LeLogicielR 1 14
PoweR 5 10
TRSbook 5 10

Package AnalyzeFMRI

Current CRAN status: NOTE: 7, OK: 8

Version: 1.1-16
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘niftidoc’ ‘tst.hdr’ ‘tst.img’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.1-16
Check: Rd line widths
Result: NOTE
    Rd file 'GaussSmoothArray.Rd':
     \usage lines wider than 90 characters:
     GaussSmoothArray(x, voxdim=c(1, 1, 1), ksize=5, sigma=diag(3, 3), mask=NULL, var.norm=FALSE)
    
    Rd file 'N2G.Spatial.Mixture.Rd':
     \usage lines wider than 90 characters:
     N2G.Spatial.Mixture(data, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize, ktype = c("2D", "3D"), mask = NULL)
     \examples lines wider than 100 characters:
     ans <- N2G.Spatial.Mixture(y, par.start = c(4, 2, 4, 2, 0.9, 0.05), ksize = 3, ktype = "2D", mask = m)
    
    Rd file 'SmoothEst.Rd':
     \examples lines wider than 100 characters:
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
     grf <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'Threshold.RF.Rd':
     \usage lines wider than 90 characters:
     Threshold.RF(p.val, sigma, voxdim = c(1, 1, 1), num.vox, type = c("Normal", "t"), df = NULL)
    
    Rd file 'analyze2nifti.Rd':
     \usage lines wider than 90 characters:
     analyze2nifti(file.in,path.in=".",path.out=".",file.out=NULL,is.nii=TRUE,qform.code=2,sform.code=2,data.type=rawToChar(raw(10)),db.name ... [TRUNCATED]
     \examples lines wider than 100 characters:
     analyze2nifti(path.in=system.file(package="AnalyzeFMRI"),file.in="example",file.out="nifti-tmp",is.nii=TRUE)
    
    Rd file 'cov.est.Rd':
     \examples lines wider than 100 characters:
     mat <- Sim.3D.GRF(d = d, voxdim = voxdim, sigma = sigma, ksize = ksize, mask = mask, type = "field")$mat
    
    Rd file 'f.complete.hdr.nifti.list.create.Rd':
     \usage lines wider than 90 characters:
     f.complete.hdr.nifti.list.create(file,dim.info=character(1),dim,intent.p1=single(1),intent.p2=single(1),intent.p3=single(1),intent.code ... [TRUNCATED]
    
    Rd file 'threeDto4D.Rd':
     \usage lines wider than 90 characters:
     threeDto4D(outputfile,path.in=NULL,prefix=NULL,regexp=NULL,times=NULL,list.of.in.files=NULL,path.out=NULL,is.nii.pair=FALSE,hdr.number= ... [TRUNCATED]
     \examples lines wider than 100 characters:
     # path.fonc <- "/network/home/lafayep/Stage/Data/map284/functional/MondrianApril2007/preprocessing/1801/smoothed/"
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Package asympTest

Current CRAN status: OK: 14

Package CompQuadForm

Current CRAN status: OK: 14

Package ConvergenceConcepts

Current CRAN status: OK: 15

Package groc

Current CRAN status: NOTE: 5, OK: 10

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.groc predict.groc print.groc summary.groc
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.groc summary.groc plot.groc predict.groc
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Package IndependenceTests

Current CRAN status: NOTE: 15

Version: 0.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘xtable’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘Rmpi’ ‘rsprng’ ‘snow’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    dependogram: no visible global function definition for ‘makeCluster’
    dependogram: no visible global function definition for
     ‘clusterSetupSPRNG’
    dependogram: no visible global function definition for ‘clusterCall’
    dependogram: no visible global function definition for ‘stopCluster’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘xtable’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘rsprng’ ‘Rmpi’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'rsprng'
Flavor: r-release-osx-x86_64-snowleopard

Package LeLogicielR

Current CRAN status: WARN: 1, NOTE: 14

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘IndependenceTests’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    File ‘LeLogicielR/R/zzz.R’:
     .onLoad calls:
     packageStartupMessage(utils::packageDescription("LeLogicielR", lib.loc = libname), appendLF = TRUE)
    
    See section ‘Good practice’ in '?.onAttach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘IndependenceTests’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'IndependenceTests'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.2
Check: examples
Result: WARN
    checking a package with encoding 'latin1' in an ASCII locale
    
     OK
Flavor: r-release-osx-x86_64-snowleopard

Package PoweR

Current CRAN status: NOTE: 5, OK: 10

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.discrepancy plot.pvalue plot.sizepower print.critvalues
     print.critvalues1 print.index print.power print.power1
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.critvalues print.critvalues1 print.index print.power
     print.power1 plot.discrepancy plot.pvalue plot.sizepower
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Package TRSbook

Current CRAN status: NOTE: 5, OK: 10

Version: 1.0.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     Ops.VectorAddr print.VectorAddr update.VectorAddr
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.VectorAddr update.VectorAddr Ops.VectorAddr
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavor: r-devel-linux-x86_64-debian-gcc