CRAN Package Check Results for Maintainer ‘Max Kuhn <mxkuhn at gmail.com>’

Last updated on 2015-02-05 23:51:02.

Package ERROR WARN NOTE OK
AppliedPredictiveModeling 1 12 2
C50 2 13
Cubist 2 13
QSARdata 14

Package AppliedPredictiveModeling

Current CRAN status: ERROR: 1, NOTE: 12, OK: 2

Version: 1.1-6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘ellipse’ ‘lattice’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1-6
Check: R code for possible problems
Result: NOTE
    bookTheme: no visible global function definition for ‘trellis.par.set’
    transparentTheme: no visible global function definition for
     ‘trellis.par.set’
    upperp: no visible global function definition for ‘ellipse’
    upperp: no visible global function definition for ‘panel.xyplot’
    upperp: no visible global function definition for ‘trellis.par.get’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-6
Check: examples
Result: ERROR
    Running examples in ‘AppliedPredictiveModeling-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: permuteRelief
    > ### Title: Permutation Statistics for the Relief Algorithm
    > ### Aliases: permuteRelief
    > ### Keywords: htest
    >
    > ### ** Examples
    >
    > set.seed(874)
    > reliefEx3 <- easyBoundaryFunc(500)
    > reliefEx3$X1 <- scale(reliefEx3$X1)
    > reliefEx3$X2 <- scale(reliefEx3$X2)
    > reliefEx3$prob <- NULL
    >
    > standardized <- permuteRelief(reliefEx3[, 1:2], reliefEx3$class,
    + ## For efficiency, a small number of
    + ## permutations are used here.
    + nperm = 50,
    + estimator="ReliefFequalK",
    + ReliefIterations= 50)
    
     *** caught segfault ***
    
     *** caught segfault ***
    address 1c00, cause 'memory not mapped'
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
     *** caught segfault ***
    address 1c00, cause 'memory not mapped'
    
     *** caught segfault ***
    
     *** caught segfault ***
    address 1c00, cause 'memory not mapped'
    address 1c00, cause 'memory not mapped'
    
     *** caught segfault ***
    
     *** caught segfault ***
    address 1c00, cause 'memory not mapped'
    address 1c00, cause 'memory not mapped'
    
    Traceback:
     1:
    Traceback:
    .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), 1: noNumeric = ncol(numdata), numericData = as.double(numdata), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), numOptions = length(options), optionsName = names(options), noNumeric = ncol(numdata), numericData = as.double(numdata), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn") discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), numOptions = length(options), optionsName = names(options),
    
    Traceback:
     2:
    Traceback:
     1: attrEval(y ~ ., data = dat, ...) 1:
    .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), 3: noNumeric = ncol(numdata), numericData = as.double(numdata), permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50,
    Traceback:
     estimator = "ReliefFequalK", ReliefIterations = 50) 1:
    Traceback:
    .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), 1: noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), noNumeric = ncol(numdata), numericData = as.double(numdata), noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), noNumeric = ncol(numdata), numericData = as.double(numdata), discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames),
    Traceback:
     numOptions = length(options), optionsName = names(options), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), 1: .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn") noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata),
     noNumeric = ncol(numdata), numericData = as.double(numdata), 2: costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), attrEval(y ~ ., data = dat, ...) discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames),
     numOptions = length(options), optionsName = names(options), 3: optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn") estimator = "ReliefFequalK", ReliefIterations = 50)
    
     2: aborting ...
    attrEval(y ~ ., data = dat, ...)
     3:
    permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, aborting ...
     estimator = "ReliefFequalK", ReliefIterations = 50)
    aborting ...
    address 1c00, cause 'memory not mapped'
    .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), noNumeric = ncol(numdata), numericData = as.double(numdata), numOptions = length(options), optionsName = names(options), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn") numOptions = length(options), optionsName = names(options),
     optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), 2: estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn")attrEval(y ~ ., data = dat, ...)
     3: permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, estimator = "ReliefFequalK", ReliefIterations = 50)
     costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), aborting ...
     discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), numOptions = length(options), optionsName = names(options), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn")
     2:
     2: attrEval(y ~ ., data = dat, ...)
    attrEval(y ~ ., data = dat, ...)
     3: permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50,
    Traceback:
     estimator = "ReliefFequalK", ReliefIterations = 50) 1:
    .C("estimateCore", noInst = aux$noInst, noDiscrete = ncol(discdata), aborting ...
     noDiscreteValues = as.integer(discnumvalues), discreteData = as.integer(discdata), noNumeric = ncol(numdata), numericData = as.double(numdata), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), costs = as.double(costMatrix), discAttrNames = as.character(discAttrNames), discValNames = as.character(discValCompressed), numAttrNames = as.character(numAttrNames), estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn")
     numOptions = length(options), optionsName = names(options), optionsVal = options, selEst = estIndex, estDisc = double(ncol(discdata)), 2: attrEval(y ~ ., data = dat, ...) estNum = double(ncol(numdata)), NAOK = TRUE, PACKAGE = "CORElearn")
    
     3: 2: attrEval(y ~ ., data = dat, ...)permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, estimator = "ReliefFequalK", ReliefIterations = 50)
     3:
    aborting ...
    permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, estimator = "ReliefFequalK", ReliefIterations = 50)
    aborting ...
     3: permuteRelief(reliefEx3[, 1:2], reliefEx3$class, nperm = 50, estimator = "ReliefFequalK", ReliefIterations = 50)
    aborting ...
    rm: cannot read directory /tmp/Rtmp7YaiiZ: No such file or directory
Flavor: r-patched-solaris-sparc

Package C50

Current CRAN status: NOTE: 2, OK: 13

Version: 0.1.0-21
Check: compiled code
Result: NOTE
    File 'C50/libs/i386/C50.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    File 'C50/libs/x64/C50.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 0.1.0-21
Check: compiled code
Result: NOTE
    File 'C50/libs/i386/C50.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    File 'C50/libs/x64/C50.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-windows-ix86+x86_64

Package Cubist

Current CRAN status: NOTE: 2, OK: 13

Version: 0.0.18
Check: compiled code
Result: NOTE
    File 'Cubist/libs/i386/Cubist.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    File 'Cubist/libs/x64/Cubist.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 0.0.18
Check: compiled code
Result: NOTE
    File 'Cubist/libs/i386/Cubist.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    File 'Cubist/libs/x64/Cubist.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'getdata.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-windows-ix86+x86_64

Package QSARdata

Current CRAN status: NOTE: 14

Version: 1.3
Check: installed package size
Result: NOTE
     installed size is 12.6Mb
     sub-directories of 1Mb or more:
     data 12.5Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64