CRAN Package Check Results for Package poplite

Last updated on 2015-02-05 23:50:32.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.99.5 1.57 43.54 45.10 OK
r-devel-linux-x86_64-debian-gcc 0.99.5 1.83 42.75 44.58 OK
r-devel-linux-x86_64-fedora-clang 0.99.5 93.66 OK
r-devel-linux-x86_64-fedora-gcc 0.99.5 93.72 OK
r-devel-osx-x86_64-clang 0.99.5 95.54 OK
r-devel-windows-ix86+x86_64 0.99.5 8.00 63.00 71.00 OK
r-patched-linux-x86_64 0.99.5 2.07 54.32 56.39 OK
r-patched-solaris-sparc 0.99.5 704.40 OK
r-patched-solaris-x86 0.99.5 156.40 OK
r-release-linux-ix86 0.99.5 2.50 68.22 70.72 OK
r-release-linux-x86_64 0.99.5 2.09 56.51 58.60 OK
r-release-osx-x86_64-mavericks 0.99.5 WARN
r-release-osx-x86_64-snowleopard 0.99.5 WARN
r-release-windows-ix86+x86_64 0.99.5 10.00 85.00 95.00 OK

Check Details

Version: 0.99.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘VariantAnnotation’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.99.5
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘poplite.Rnw’
     ...
    8 8 8 18 0 1.6844357 0.53539884 2 F
    9 9 9 20 1 0.9113913 -0.55527835 2 F
    10 10 10 12 1 0.2374303 1.77950291 1 M
    .. ... ... ... ... ... ... ... ...
    
    > library(VariantAnnotation)
    
     When sourcing ‘poplite.R’:
    Error: there is no package called ‘VariantAnnotation’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.99.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
     select
    
    The following object is masked from ‘package:stats’:
    
     filter
    
    Error in makeSchemaFromData(dna, "dna") :
     ERROR: The names of the supplied data.frame need to be modified for the database see correct.df.names
    Starting clinical
    Starting samples
    Starting dna
    Error in filter_.Database(.data, .dots = lazyeval::lazy_dots(...)) :
     ERROR: Cannot uniquely map columns to table, try using: tableX.columnY
    Loading required package: DBI
    Starting gender
    Starting clinical
    Starting samples
    Starting dna
    
    Error: processing vignette 'poplite.Rnw' failed with diagnostics:
     chunk 15
    Error in library(VariantAnnotation) :
     there is no package called ‘VariantAnnotation’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard