CRAN Package Check Results for Package sybilcycleFreeFlux

Last updated on 2015-02-05 23:50:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.1 3.34 45.38 48.72 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.1 3.17 44.61 47.78 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.1 104.34 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.1 100.14 NOTE
r-devel-osx-x86_64-clang 1.0.1 96.08 NOTE
r-devel-windows-ix86+x86_64 1.0.1 12.00 68.00 80.00 NOTE
r-patched-linux-x86_64 1.0.1 4.04 55.29 59.33 NOTE
r-patched-solaris-sparc 1.0.1 746.60 NOTE
r-patched-solaris-x86 1.0.1 183.60 NOTE
r-release-linux-ix86 1.0.1 4.76 65.78 70.55 NOTE
r-release-linux-x86_64 1.0.1 4.07 55.52 59.59 NOTE
r-release-osx-x86_64-mavericks 1.0.1 ERROR
r-release-osx-x86_64-snowleopard 1.0.1 NOTE
r-release-windows-ix86+x86_64 1.0.1 15.00 85.00 100.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.1 13.00 114.00 127.00 NOTE

Check Details

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    llFBA: no visible global function definition for ‘openProbCPLEX’
    llFBA: no visible global function definition for ‘setIntParmCPLEX’
    llFBA: no visible binding for global variable ‘CPX_PARAM_SCRIND’
    llFBA: no visible binding for global variable ‘CPX_OFF’
    llFBA: no visible global function definition for ‘chgProbNameCPLEX’
    llFBA: no visible global function definition for ‘newRowsCPLEX’
    llFBA: no visible global function definition for ‘newColsCPLEX’
    llFBA: no visible global function definition for ‘copyColTypeCPLEX’
    llFBA: no visible global function definition for ‘setObjDirCPLEX’
    llFBA: no visible binding for global variable ‘CPX_MAX’
    llFBA: no visible global function definition for ‘writeProbCPLEX’
    llFBA: no visible global function definition for ‘mipoptCPLEX’
    llFBA: no visible global function definition for ‘solutionCPLEX’
    llFBA: no visible global function definition for ‘getStatCPLEX’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘cplexAPI’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘cplexAPI’ ‘glpkAPI’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.1
Check: examples
Result: ERROR
    Running examples in ‘sybilcycleFreeFlux-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cfFBA
    > ### Title: cycle free flux
    > ### Aliases: cfFBA lrFBA
    > ### Keywords: cycle free flux loopless FBA
    >
    > ### ** Examples
    >
    > ##---- Should be DIRECTLY executable !! ----
    > ##-- ==> Define data, use random,
    > ##-- or do help(data=index) for the standard data sets.
    > data(iAF1260)
    > model=iAF1260
    > fba=optimizeProb(model)
    Loading required package: glpkAPI
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘glpkAPI’
    Error in checkDefaultMethod(solver, method, pType) :
     package ‘glpkAPI’ not found
    Calls: optimizeProb -> optimizeProb -> .local -> sysBiolAlg
    Execution halted
Flavor: r-release-osx-x86_64-mavericks