BayClone2: Bayesian Feature Allocation Model for Tumor Heterogeneity

A Bayesian feature allocation model is implemented for inference on tumor heterogeneity using next-generation sequencing data. The model identifies the subclonal copy number and single nucleotide mutations at a selected set of loci and provides inference on genetic tumor variation.

Version: 1.1
Depends: R (≥ 2.0.1), combinat
Published: 2014-12-24
Author: Juhee Lee, Peter Mueller, Subhajit Sengupta, Kamalakar Gulukota, Yuan Ji
Maintainer: Subhajit Sengupta <subhajit06 at gmail.com>
License: GPL-3 | file LICENSE
NeedsCompilation: yes
CRAN checks: BayClone2 results

Downloads:

Reference manual: BayClone2.pdf
Package source: BayClone2_1.1.tar.gz
Windows binaries: r-devel: BayClone2_1.1.zip, r-release: BayClone2_1.1.zip, r-oldrel: BayClone2_1.1.zip
OS X Snow Leopard binaries: r-release: BayClone2_1.1.tgz, r-oldrel: BayClone2_1.1.tgz
OS X Mavericks binaries: r-release: BayClone2_1.1.tgz
Old sources: BayClone2 archive