This package carries out association analysis of common copy number variants in population-based studies. This package includes functions for analysing association under a series of study designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts) as response, adjusting for covariates and considering various inheritance models. It also includes functions for inferring copy number (CNV genotype calling). Various classes and methods for generic functions (print, summary, plot, anova, ... ) have been created to facilitate the analysis.
Version: | 2.0.1 |
Depends: | R (≥ 2.15.0), CNVassocData, mixdist, mclust, survival |
Suggests: | CGHcall, CGHregions, CNVtools, xtable, MASS |
Published: | 2013-09-19 |
Author: | Juan R González, Isaac Subirana |
Maintainer: | Isaac Subirana <isubirana at imim.es> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
URL: | http://www.creal.cat/jrgonzalez/software.htm |
NeedsCompilation: | yes |
CRAN checks: | CNVassoc results |
Reference manual: | CNVassoc.pdf |
Vignettes: |
CNVassoc |
Package source: | CNVassoc_2.0.1.tar.gz |
Windows binaries: | r-devel: CNVassoc_2.0.1.zip, r-release: CNVassoc_2.0.1.zip, r-oldrel: CNVassoc_2.0.1.zip |
OS X Snow Leopard binaries: | r-release: CNVassoc_2.0.1.tgz, r-oldrel: CNVassoc_2.0.1.tgz |
OS X Mavericks binaries: | r-release: CNVassoc_2.0.1.tgz |
Old sources: | CNVassoc archive |