CNVassoc: Association analysis of CNV data

This package carries out association analysis of common copy number variants in population-based studies. This package includes functions for analysing association under a series of study designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts) as response, adjusting for covariates and considering various inheritance models. It also includes functions for inferring copy number (CNV genotype calling). Various classes and methods for generic functions (print, summary, plot, anova, ... ) have been created to facilitate the analysis.

Version: 2.0.1
Depends: R (≥ 2.15.0), CNVassocData, mixdist, mclust, survival
Suggests: CGHcall, CGHregions, CNVtools, xtable, MASS
Published: 2013-09-19
Author: Juan R González, Isaac Subirana
Maintainer: Isaac Subirana <isubirana at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: CNVassoc results


Reference manual: CNVassoc.pdf
Vignettes: CNVassoc
Package source: CNVassoc_2.0.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: CNVassoc_2.0.1.tgz, r-oldrel: CNVassoc_2.0.1.tgz
OS X Mavericks binaries: r-release: CNVassoc_2.0.1.tgz
Old sources: CNVassoc archive