CpGFilter: CpG Filtering Method Based on Intra-class Correlation
Coefficients
Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.
| Version: |
1.0 |
| Published: |
2014-11-06 |
| Author: |
Jun Chen |
| Maintainer: |
Jun Chen <chen.jun2 at mayo.edu> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| CRAN checks: |
CpGFilter results |
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