DDD: Diversity-Dependent Diversification

implements maximum likelihood methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, doi: 10.1098/rspb.2011.1439. DDD also implements a maximum likelihood method to detect key innovations defined as decoupling of diversity-dependence. See Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, doi: 10.1086/667574. Finally, DDD contains a function to simulate the diversity-dependent process.

Version: 2.6
Depends: R (≥ 3.0.2), deSolve, ape, ade4
Published: 2014-12-18
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne at rug.nl>
License: GPL-2
NeedsCompilation: no
In views: Phylogenetics, Phylogenetics
CRAN checks: DDD results

Downloads:

Reference manual: DDD.pdf
Package source: DDD_2.6.tar.gz
Windows binaries: r-devel: DDD_2.6.zip, r-release: DDD_2.6.zip, r-oldrel: DDD_2.6.zip
OS X Snow Leopard binaries: r-release: DDD_2.6.tgz, r-oldrel: DDD_2.6.tgz
OS X Mavericks binaries: r-release: DDD_2.6.tgz
Old sources: DDD archive

Reverse dependencies:

Reverse depends: PBD