IBDsim: Simulation of chromosomal regions shared by family members

R package for simulation of IBD sharing among family members. Using sex specific recombination rates from the Decode map (2010) of the human genome, phased chromosomes are simulated for all pedigree members, either by unconditional 'gene dropping' or conditional on a specified IBD pattern. Regions compatible with the query IBD pattern (possibly different from the conditional pattern) are subsequently detected and summarized.

Version: 0.9-4
Depends: R (≥ 3.0), paramlink (≥ 0.9)
Published: 2014-05-30
Author: Magnus Dehli Vigeland
Maintainer: Magnus Dehli Vigeland <magnusdv at studmed.uio.no>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: IBDsim results

Downloads:

Reference manual: IBDsim.pdf
Package source: IBDsim_0.9-4.tar.gz
Windows binaries: r-devel: IBDsim_0.9-4.zip, r-release: IBDsim_0.9-4.zip, r-oldrel: IBDsim_0.9-4.zip
OS X Snow Leopard binaries: r-release: IBDsim_0.9-4.tgz, r-oldrel: IBDsim_0.9-4.tgz
OS X Mavericks binaries: r-release: IBDsim_0.9-4.tgz
Old sources: IBDsim archive