P2C2M: Posterior Predictive Checks of Coalescent Models

P2C2M is an R package to conduct posterior predictive checks of coalescent models using gene and species trees generated by BEAST or *BEAST. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites only: genealogicalSorting (http://www.genealogicalsorting.org) and phybase (http://odyssey.bioinformatics.uga.edu/~lliu/phybase/). To use these optional packages, the installation of the Python libraries NumPy (>= 1.9.0) and DendroPy (= 3.12.0) is required.

Version: 0.6
Depends: R (≥ 3.0.0)
Imports: ape (≥ 3.1-4), apTreeshape (≥ 1.4-5), ggplot2 (≥ 1.0.0), rPython (≥ 0.0-5), stringr (≥ 0.6.2)
Suggests: genealogicalSorting (≥ 0.92), phybase (≥ 1.3.1), Rmpi (≥ 0.6-5), xtermStyle (≥ 2.2-4)
OS_type: unix
Published: 2015-01-30
Author: Michael Gruenstaeudl, Noah Reid
Maintainer: Michael Gruenstaeudl <gruenstaeudl.1 at osu.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
SystemRequirements: gcc (>= 4.9), Python (= 2.7)
Citation: P2C2M citation info
CRAN checks: P2C2M results

Downloads:

Reference manual: P2C2M.pdf
Vignettes: P2C2M
Package source: P2C2M_0.6.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
OS X Snow Leopard binaries: r-release: not available, r-oldrel: not available
OS X Mavericks binaries: r-release: P2C2M_0.5.tgz
Old sources: P2C2M archive