P2C2M is an R package to conduct posterior predictive checks of coalescent models using gene and species trees generated by BEAST or *BEAST. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites only: genealogicalSorting (http://www.genealogicalsorting.org) and phybase (http://odyssey.bioinformatics.uga.edu/~lliu/phybase/). To use these optional packages, the installation of the Python libraries NumPy (>= 1.9.0) and DendroPy (= 3.12.0) is required.
| Version: |
0.6 |
| Depends: |
R (≥ 3.0.0) |
| Imports: |
ape (≥ 3.1-4), apTreeshape (≥ 1.4-5), ggplot2 (≥ 1.0.0), rPython (≥ 0.0-5), stringr (≥ 0.6.2) |
| Suggests: |
genealogicalSorting (≥ 0.92), phybase (≥ 1.3.1), Rmpi (≥
0.6-5), xtermStyle (≥ 2.2-4) |
| OS_type: |
unix |
| Published: |
2015-01-30 |
| Author: |
Michael Gruenstaeudl, Noah Reid |
| Maintainer: |
Michael Gruenstaeudl <gruenstaeudl.1 at osu.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
yes |
| SystemRequirements: |
gcc (>= 4.9), Python (= 2.7) |
| Citation: |
P2C2M citation info |
| CRAN checks: |
P2C2M results |