RAM: R for Amplicon-based Metagenomics

This package provides a series of functions to make amplicon-based metagenomic analysis more accessible, and publication-quality plots simple. Amplicon-based (or targeted) metagenomics amplifies and sequences selected DNA regions of environmental samples, but not the entire pool of genetic material, which is referred to as shotgun metagenomics. The amplicon-metagenomics mainly aims at characterizing broad microbiota biodiversity in different environments.

Version: 1.2.0
Depends: vegan, ggplot2, stats
Imports: gridExtra, RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, ape, lattice, reshape
Suggests: testthat, mapproj, gtable, indicspecies, Heatplus
Published: 2014-12-10
Author: Wen Chen and Joshua Simpson
Maintainer: Wen Chen <Wen.Chen at agr.gc.ca>
License: MIT + file LICENSE
Copyright: Government of Canada
URL: http://cran.r-project.org/web/packages/RAM/index.html
NeedsCompilation: no
Citation: RAM citation info
Materials: NEWS ChangeLog
CRAN checks: RAM results

Downloads:

Reference manual: RAM.pdf
Package source: RAM_1.2.0.tar.gz
Windows binaries: r-devel: RAM_1.2.0.zip, r-release: RAM_1.2.0.zip, r-oldrel: RAM_1.2.0.zip
OS X Snow Leopard binaries: r-release: not available, r-oldrel: RAM_1.2.0.tgz
OS X Mavericks binaries: r-release: not available
Old sources: RAM archive