Rsampletrees: Sampletrees Input/Output Processing

Contains functions that are useful for pre- and post-processing the tree output from the MCMC-based C++ program sampletrees. The program sampletrees is used to sample gene genealogies conditional on either phased or unphased SNP genotype data. More information about sampletrees can be found at http://stat.sfu.ca/statgen/research/sampletrees.html . Pre-processing tasks involve creating the settings file, the haplotype estimation files (if input data is genotype), and error checking the settings. Post-processing involves reading in the MCMC output from a run of sampletrees and computing summary statistics.

Version: 0.1
Depends: haplo.stats, ape
Published: 2015-02-02
Author: Kelly Burkett, Brad McNeney, Jinko Graham
Maintainer: Kelly Burkett <kburkett at uottawa.ca>
License: GPL-2
NeedsCompilation: no
CRAN checks: Rsampletrees results

Downloads:

Reference manual: Rsampletrees.pdf
Package source: Rsampletrees_0.1.tar.gz
Windows binaries: r-devel: Rsampletrees_0.1.zip, r-release: Rsampletrees_0.1.zip, r-oldrel: Rsampletrees_0.1.zip
OS X Snow Leopard binaries: r-release: Rsampletrees_0.1.tgz, r-oldrel: Rsampletrees_0.1.tgz
OS X Mavericks binaries: r-release: Rsampletrees_0.1.tgz