sybilccFBA: Cost Constrained FLux Balance Analysis: MetabOlic Modeling with
ENzyme kineTics (MOMENT)
implement cost constrained flux balance analysis as described in Adadi, R., Volkmer, B., Milo, R., Heinemann, M., & Shlomi, T. (2012). Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters, 8(7). doi:10.1371/journal.pcbi.1002575. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010)
| Version: |
1.0.0 |
| Depends: |
R (≥ 2.10.0), sybil, Matrix |
| Suggests: |
cplexAPI (≥ 1.2.6), glpkAPI (≥ 1.2.1) |
| Published: |
2014-04-02 |
| Author: |
Abdelmoneim Amer Desouki [aut, cre] |
| Maintainer: |
Abdelmoneim Amer Desouki
<abdelmoneim.amer at uni-duesseldorf.de> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
sybilccFBA results |
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