CRAN Package Check Results for Package BaySIC

Last updated on 2015-04-24 23:46:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.88 20.97 22.85 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.89 20.51 22.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 46.92 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 47.37 NOTE
r-devel-osx-x86_64-clang 1.0 44.67 NOTE
r-devel-windows-ix86+x86_64 1.0 6.00 35.00 41.00 NOTE
r-patched-linux-x86_64 1.0 1.97 20.95 22.92 NOTE
r-patched-solaris-sparc 1.0 306.50 NOTE
r-patched-solaris-x86 1.0 63.10 NOTE
r-release-linux-x86_64 1.0 1.76 20.48 22.24 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 ERROR
r-release-windows-ix86+x86_64 1.0 6.00 34.00 40.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 7.00 60.00 67.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘fields’ ‘poibin’ ‘rjags’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    BMR.plot: no visible global function definition for ‘image.plot’
    baysic.fit: no visible global function definition for ‘jags.model’
    baysic.fit: no visible global function definition for ‘coda.samples’
    baysic.test : <anonymous>: no visible global function definition for
     ‘ppoibin’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'baysic.fit.Rd':
     \usage lines wider than 90 characters:
     baysic.fit(dat.out, snv.cat, covar = NULL, excl.list = NULL, burn.in = 10000,n.samp = 25000, fn.jags = "baysic.jags", prior = NULL)
     \examples lines wider than 100 characters:
     snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))
    
    Rd file 'baysic.test.Rd':
     \usage lines wider than 90 characters:
     baysic.test(dat.out, fit.out, fdr.level = 0.15, fuzzy.cnt = 10000, r = NULL,subtype = NULL, PB.approx = FALSE)
     \examples lines wider than 100 characters:
     snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64