Last updated on 2015-04-24 23:46:36.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 1.88 | 20.97 | 22.85 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 1.89 | 20.51 | 22.40 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 46.92 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 47.37 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.0 | 44.67 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.0 | 6.00 | 35.00 | 41.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0 | 1.97 | 20.95 | 22.92 | NOTE | |
| r-patched-solaris-sparc | 1.0 | 306.50 | NOTE | |||
| r-patched-solaris-x86 | 1.0 | 63.10 | NOTE | |||
| r-release-linux-x86_64 | 1.0 | 1.76 | 20.48 | 22.24 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.0 | NOTE | ||||
| r-release-osx-x86_64-snowleopard | 1.0 | ERROR | ||||
| r-release-windows-ix86+x86_64 | 1.0 | 6.00 | 34.00 | 40.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.0 | 7.00 | 60.00 | 67.00 | NOTE |
Version: 1.0
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
‘fields’ ‘poibin’ ‘rjags’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
BMR.plot: no visible global function definition for ‘image.plot’
baysic.fit: no visible global function definition for ‘jags.model’
baysic.fit: no visible global function definition for ‘coda.samples’
baysic.test : <anonymous>: no visible global function definition for
‘ppoibin’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: Rd line widths
Result: NOTE
Rd file 'baysic.fit.Rd':
\usage lines wider than 90 characters:
baysic.fit(dat.out, snv.cat, covar = NULL, excl.list = NULL, burn.in = 10000,n.samp = 25000, fn.jags = "baysic.jags", prior = NULL)
\examples lines wider than 100 characters:
snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))
Rd file 'baysic.test.Rd':
\usage lines wider than 90 characters:
baysic.test(dat.out, fit.out, fdr.level = 0.15, fuzzy.cnt = 10000, r = NULL,subtype = NULL, PB.approx = FALSE)
\examples lines wider than 100 characters:
snv.cat.ex[[2]]<-unique(c(grep("TC.",colnames(ccds.19)[-c(1:2)]),grep(".CG",colnames(ccds.19)[-c(1:2)])))
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64