CRAN Package Check Results for Package pbatR

Last updated on 2015-04-24 23:46:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-9 3.30 26.33 29.63 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-9 3.38 26.79 30.17 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-9 56.81 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2-9 48.89 NOTE
r-devel-osx-x86_64-clang 2.2-9 57.80 NOTE
r-devel-windows-ix86+x86_64 2.2-9 21.00 46.00 67.00 NOTE
r-patched-linux-x86_64 2.2-9 3.70 26.26 29.97 NOTE
r-patched-solaris-sparc 2.2-9 332.30 NOTE
r-patched-solaris-x86 2.2-9 74.80 NOTE
r-release-linux-x86_64 2.2-9 4.22 27.00 31.22 NOTE
r-release-osx-x86_64-mavericks 2.2-9 NOTE
r-release-osx-x86_64-snowleopard 2.2-9 NOTE
r-release-windows-ix86+x86_64 2.2-9 20.00 50.00 70.00 NOTE
r-oldrel-windows-ix86+x86_64 2.2-9 15.00 64.00 79.00 NOTE

Check Details

Version: 2.2-9
Check: DESCRIPTION meta-information
Result: NOTE
    Package listed in more than one of Depends, Imports, Suggests, Enhances:
     ‘tcltk’
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2-9
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rootSolve’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘kinship2’ ‘tcltk’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     ‘rootSolve’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2-9
Check: foreign function calls
Result: NOTE
    Call with DUP:
     .C("powerR", as.integer(numOffspring), as.integer(numParents),
     as.integer(numFamilies), as.integer(additionalOffspringPhenos),
     as.integer(ascertainment), as.integer(modelGen), as.integer(modelTest),
     as.double(afreqMarker), as.double(penAA), as.double(penAB),
     as.double(penBB), as.double(heritability), as.double(contsAscertainmentLower),
     as.double(contsAscertainmentUpper), as.double(pDiseaseAlleleGivenMarkerAllele),
     as.double(afreqDSL), as.double(qnorm(1 - alpha/2)), as.double(offset),
     as.integer(numSim), as.integer(ITERATION_KILLER), result,
     DUP = FALSE)
    DUP is no longer supported and will be ignored.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.2-9
Check: R code for possible problems
Result: NOTE
    pen_or1: no visible global function definition for ‘multiroot’
    plot.pedigree: no visible global function definition for
     ‘align.pedigree’
    plotPed: no visible global function definition for ‘pedigree’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2-9
Check: foreign function calls
Result: NOTE
    Call with DUP != TRUE:
     .C("powerR", as.integer(numOffspring), as.integer(numParents),
     as.integer(numFamilies), as.integer(additionalOffspringPhenos),
     as.integer(ascertainment), as.integer(modelGen), as.integer(modelTest),
     as.double(afreqMarker), as.double(penAA), as.double(penAB),
     as.double(penBB), as.double(heritability), as.double(contsAscertainmentLower),
     as.double(contsAscertainmentUpper), as.double(pDiseaseAlleleGivenMarkerAllele),
     as.double(afreqDSL), as.double(qnorm(1 - alpha/2)), as.double(offset),
     as.integer(numSim), as.integer(ITERATION_KILLER), result,
     DUP = FALSE)
    DUP = FALSE is deprecated and will be disabled in future versions of R.
Flavor: r-oldrel-windows-ix86+x86_64