CRAN Package Check Results for Package Geneland

Last updated on 2015-09-06 23:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.0.5 13.56 42.05 55.61 NOTE
r-devel-linux-x86_64-debian-gcc 4.0.5 13.77 41.26 55.03 NOTE
r-devel-linux-x86_64-fedora-clang 4.0.5 96.56 NOTE
r-devel-linux-x86_64-fedora-gcc 4.0.5 98.16 NOTE
r-devel-osx-x86_64-clang 4.0.5 99.73 NOTE
r-devel-windows-ix86+x86_64 4.0.5 32.00 79.00 111.00 NOTE
r-patched-linux-x86_64 4.0.5 13.63 46.52 60.16 NOTE
r-patched-solaris-sparc 4.0.5 644.80 NOTE
r-patched-solaris-x86 4.0.5 149.30 NOTE
r-release-linux-x86_64 4.0.5 13.64 43.65 57.29 NOTE
r-release-osx-x86_64-mavericks 4.0.5 NOTE
r-release-windows-ix86+x86_64 4.0.5 37.00 77.00 114.00 NOTE
r-oldrel-windows-ix86+x86_64 4.0.5 48.00 145.00 193.00 OK

Check Details

Version: 4.0.5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 4.0.5
Check: R code for possible problems
Result: NOTE
    EstimateFreqNA: no visible global function definition for ‘read.table’
    Fstat.output: no visible global function definition for ‘read.table’
    Fstat.output: no visible global function definition for ‘hist’
    Geneland.GUI : helpWindow: no visible global function definition for
     ‘help.start’
    Geneland.GUI : configure : getcoordinatesfile: no visible global
     function definition for ‘read.table’
    Geneland.GUI : configure : gethaploidgenotypefile: no visible global
     function definition for ‘read.table’
    Geneland.GUI : configure : getcodominantgenotypefile: no visible global
     function definition for ‘read.table’
    Geneland.GUI : configure : getdominantgenotypefile: no visible global
     function definition for ‘read.table’
    Geneland.GUI : configure : getqtcfile: no visible global function
     definition for ‘read.table’
    Geneland.GUI : configure : getlabelsfile: no visible global function
     definition for ‘read.table’
    Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible global function
     definition for ‘hist’
    Geneland.GUI : run : RunmcmcFmodel : mr: no visible global function
     definition for ‘hist’
    Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible global
     function definition for ‘hist’
    Geneland.GUI : initialimage : <anonymous>: no visible global function
     definition for ‘browseURL’
    Geneland.GUI : plot : Dpost : Drawdpost: no visible global function
     definition for ‘postscript’
    Geneland.GUI : plot : Dpost : Drawdpost: no visible global function
     definition for ‘plot.default’
    Geneland.GUI : plot : Dpost : Drawdpost: no visible global function
     definition for ‘title’
    Geneland.GUI : plot : Dpost : Drawdpost: no visible global function
     definition for ‘dev.off’
    Geneland.GUI : Gfstat : Runfstat : ShowtextFis: no visible global
     function definition for ‘read.table’
    Geneland.GUI : Gfstat : Runfstat : ShowtextFst: no visible global
     function definition for ‘read.table’
    Geneland.GUI : Gfstat : Runfstat: no visible global function definition
     for ‘write.table’
    Geneland.GUI : SimnonIBD : runnonibd: no visible global function
     definition for ‘write.table’
    Geneland.GUI : SimIBD : runibd: no visible global function definition
     for ‘write.table’
    Geneland.GUI : Nullify : gltgp: no visible global function definition
     for ‘write.table’
    Geneland.GUI : Showtextproba: no visible global function definition for
     ‘read.table’
    Geneland.GUI : Showtextindiv: no visible global function definition for
     ‘read.table’
    Geneland.GUI : Showtextmodal: no visible global function definition for
     ‘read.table’
    Geneland.GUI : Parallel: no visible global function definition for
     ‘installed.packages’
    HZ : rdirichlet: no visible global function definition for ‘rgamma’
    HZ : EstimateFreq: no visible global function definition for
     ‘read.table’
    HZ: no visible global function definition for ‘read.table’
    HZ: no visible global function definition for ‘hist’
    HZ: no visible global function definition for ‘dist’
    HZ: no visible global function definition for ‘runif’
    HZ: no visible global function definition for ‘write.table’
    MCMC: no visible global function definition for ‘file_test’
    MCMC: no visible global function definition for ‘rgamma’
    MCMC: no visible global function definition for ‘write.table’
    PlotDrift: no visible global function definition for ‘read.table’
    PlotDrift: no visible global function definition for ‘postscript’
    PlotDrift: no visible global function definition for ‘par’
    PlotDrift: no visible global function definition for ‘dev.off’
    PlotDrift: no visible global function definition for ‘dev.new’
    PlotFreq: no visible global function definition for ‘read.table’
    PlotFreq: no visible global function definition for ‘title’
    PlotFreq: no visible global function definition for ‘postscript’
    PlotFreq: no visible global function definition for ‘par’
    PlotFreq: no visible global function definition for ‘dev.off’
    PlotFreqA: no visible global function definition for ‘read.table’
    PlotFreqA: no visible global function definition for ‘dev.new’
    PlotFreqA: no visible global function definition for ‘title’
    PlotFreqA: no visible global function definition for ‘postscript’
    PlotFreqA: no visible global function definition for ‘dev.off’
    PlotTessDyn: no visible global function definition for ‘read.table’
    PlotTessDyn: no visible global function definition for ‘image’
    PlotTessDyn: no visible global function definition for ‘terrain.colors’
    PlotTessDyn: no visible global function definition for ‘points’
    PlotTessellation: no visible global function definition for
     ‘read.table’
    PlotTessellation: no visible global function definition for ‘dev.new’
    PlotTessellation: no visible global function definition for ‘image’
    PlotTessellation: no visible global function definition for ‘title’
    PlotTessellation: no visible global function definition for ‘contour’
    PlotTessellation: no visible global function definition for ‘points’
    PlotTessellation: no visible global function definition for
     ‘postscript’
    PlotTessellation: no visible global function definition for ‘dev.off’
    Plotnpop: no visible global function definition for ‘read.table’
    Plotnpop: no visible global function definition for ‘postscript’
    Plotnpop: no visible global function definition for ‘pdf’
    Plotnpop: no visible global function definition for ‘par’
    Plotnpop: no visible global function definition for ‘hist’
    Plotnpop: no visible global function definition for ‘dev.off’
    Plotntile: no visible global function definition for ‘read.table’
    Plotntile: no visible global function definition for ‘postscript’
    Plotntile: no visible global function definition for ‘par’
    Plotntile: no visible global function definition for ‘hist’
    Plotntile: no visible global function definition for ‘dev.off’
    PostProcessChain: no visible global function definition for
     ‘read.table’
    PostProcessChain: no visible global function definition for ‘file_test’
    PostProcessChain: no visible global function definition for ‘hist’
    PostProcessChain: no visible global function definition for
     ‘write.table’
    PosteriorMode: no visible global function definition for ‘read.table’
    PosteriorMode: no visible global function definition for ‘dev.new’
    PosteriorMode: no visible global function definition for ‘image’
    PosteriorMode: no visible global function definition for
     ‘terrain.colors’
    PosteriorMode: no visible global function definition for ‘points’
    PosteriorMode: no visible global function definition for ‘title’
    PosteriorMode: no visible global function definition for ‘postscript’
    PosteriorMode: no visible global function definition for ‘pdf’
    PosteriorMode: no visible global function definition for ‘dev.off’
    gl2gp: no visible global function definition for ‘write.table’
    show.estimate.hz: no visible global function definition for
     ‘read.table’
    show.estimate.hz: no visible global function definition for ‘palette’
    show.estimate.hz: no visible global function definition for
     ‘terrain.colors’
    show.estimate.hz: no visible global function definition for ‘polygon’
    show.estimate.hz: no visible global function definition for ‘dev.new’
    show.estimate.hz: no visible global function definition for ‘par’
    show.estimate.hz: no visible global function definition for ‘lines’
    show.estimate.hz: no visible global function definition for ‘abline’
    show.simdata: no visible global function definition for ‘dev.new’
    show.simdata: no visible global function definition for ‘pdf’
    show.simdata: no visible global function definition for ‘points’
    show.simdata: no visible global function definition for ‘text’
    show.simdata: no visible global function definition for ‘title’
    show.simdata: no visible global function definition for ‘dev.off’
    show.simdata: no visible global function definition for ‘image’
    show.simdata: no visible global function definition for
     ‘terrain.colors’
    show.simdata: no visible global function definition for ‘heat.colors’
    simFmodel: no visible global function definition for ‘runif’
    simFmodel: no visible global function definition for ‘rbeta’
    simFmodel: no visible global function definition for ‘rexp’
    simFmodel: no visible global function definition for ‘rgamma’
    simFmodel: no visible global function definition for ‘dev.new’
    simFmodel: no visible global function definition for ‘points’
    simFmodel: no visible global function definition for ‘text’
    simFmodel: no visible global function definition for ‘par’
    simFmodel: no visible global function definition for ‘hist’
    simdata: no visible global function definition for ‘rpois’
    simdata: no visible global function definition for ‘runif’
    simdata: no visible global function definition for ‘rnorm’
    simdata: no visible global function definition for ‘qexp’
    simdata: no visible global function definition for ‘pnorm’
    simdata: no visible global function definition for ‘qgamma’
    simdata: no visible global function definition for ‘dist’
    simdata: no visible global function definition for ‘lm’
    simdata: no visible global function definition for ‘dev.new’
    simdata: no visible global function definition for ‘points’
    Undefined global functions or variables:
     abline browseURL contour dev.new dev.off dist file_test heat.colors
     help.start hist image installed.packages lines lm palette par pdf
     plot.default pnorm points polygon postscript qexp qgamma rbeta
     read.table rexp rgamma rnorm rpois runif terrain.colors text title
     write.table
    Consider adding
     importFrom("grDevices", "dev.new", "dev.off", "heat.colors", "palette",
     "pdf", "postscript", "terrain.colors")
     importFrom("graphics", "abline", "contour", "hist", "image", "lines",
     "par", "plot.default", "points", "polygon", "text", "title")
     importFrom("stats", "dist", "lm", "pnorm", "qexp", "qgamma", "rbeta",
     "rexp", "rgamma", "rnorm", "rpois", "runif")
     importFrom("utils", "browseURL", "file_test", "help.start",
     "installed.packages", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64