Last updated on 2015-09-06 23:47:45.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2 | 0.76 | 11.78 | 12.54 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2 | 0.76 | 11.25 | 12.00 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2 | 24.43 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2 | 25.18 | NOTE | |||
| r-devel-osx-x86_64-clang | 0.2 | 20.82 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.2 | 3.00 | 25.00 | 28.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2 | 0.90 | 12.06 | 12.96 | NOTE | |
| r-patched-solaris-sparc | 0.2 | 167.00 | NOTE | |||
| r-patched-solaris-x86 | 0.2 | 40.20 | NOTE | |||
| r-release-linux-x86_64 | 0.2 | 0.87 | 12.12 | 12.99 | NOTE | |
| r-release-osx-x86_64-mavericks | 0.2 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.2 | 4.00 | 33.00 | 37.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 0.2 | 5.00 | 27.00 | 32.00 | NOTE |
Version: 0.2
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64
Version: 0.2
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
‘RCurl’ ‘RJSONIO’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2
Check: R code for possible problems
Result: NOTE
File ‘SynergizeR/R/zzz.r’:
.onLoad calls:
packageStartupMessage("\nSynergizeR\n", appendLF = TRUE)
packageStartupMessage("IMPORTANT: The Synergizer has been designed for bulk translation of identifiers.\nSee http://llama.mshri.on.ca/synergizer/doc/ for the details of usage. ", appendLF = TRUE)
See section ‘Good practice’ in '?.onAttach'.
available_authorities: no visible global function definition for
‘getCurlHandle’
available_authorities: no visible global function definition for
‘curlSetOpt’
available_authorities: no visible global function definition for
‘basicTextGatherer’
available_authorities: no visible global function definition for
‘basicHeaderGatherer’
available_authorities: no visible global function definition for
‘curlPerform’
available_authorities: no visible global function definition for
‘fromJSON’
available_domains: no visible global function definition for
‘getCurlHandle’
available_domains: no visible global function definition for
‘curlSetOpt’
available_domains: no visible global function definition for
‘basicTextGatherer’
available_domains: no visible global function definition for
‘basicHeaderGatherer’
available_domains: no visible global function definition for
‘curlPerform’
available_domains: no visible global function definition for ‘fromJSON’
available_ranges: no visible global function definition for
‘getCurlHandle’
available_ranges: no visible global function definition for
‘curlSetOpt’
available_ranges: no visible global function definition for
‘basicTextGatherer’
available_ranges: no visible global function definition for
‘basicHeaderGatherer’
available_ranges: no visible global function definition for
‘curlPerform’
available_ranges: no visible global function definition for ‘fromJSON’
available_species: no visible global function definition for
‘getCurlHandle’
available_species: no visible global function definition for
‘curlSetOpt’
available_species: no visible global function definition for
‘basicTextGatherer’
available_species: no visible global function definition for
‘basicHeaderGatherer’
available_species: no visible global function definition for
‘curlPerform’
available_species: no visible global function definition for ‘fromJSON’
server_version: no visible global function definition for
‘getCurlHandle’
server_version: no visible global function definition for ‘curlSetOpt’
server_version: no visible global function definition for
‘basicTextGatherer’
server_version: no visible global function definition for
‘basicHeaderGatherer’
server_version: no visible global function definition for ‘curlPerform’
server_version: no visible global function definition for ‘fromJSON’
synergizer: no visible global function definition for
‘basicTextGatherer’
synergizer: no visible global function definition for
‘basicHeaderGatherer’
synergizer: no visible global function definition for ‘curlPerform’
synergizer: no visible global function definition for ‘getCurlHandle’
synergizer: no visible global function definition for ‘toJSON’
synergizer: no visible global function definition for ‘fromJSON’
synergizer: no visible global function definition for ‘write.table’
Undefined global functions or variables:
basicHeaderGatherer basicTextGatherer curlPerform curlSetOpt fromJSON
getCurlHandle toJSON write.table
Consider adding
importFrom("utils", "write.table")
to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64
Version: 0.2
Check: Rd line widths
Result: NOTE
Rd file 'available_ranges.Rd':
\usage lines wider than 90 characters:
available_ranges(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol")
Rd file 'synergizer.Rd':
\usage lines wider than 90 characters:
synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)
\examples lines wider than 100 characters:
symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at ... [TRUNCATED]
entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1 ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2
Check: R code for possible problems
Result: NOTE
File ‘SynergizeR/R/zzz.r’:
.onLoad calls:
packageStartupMessage("\nSynergizeR\n", appendLF = TRUE)
packageStartupMessage("IMPORTANT: The Synergizer has been designed for bulk translation of identifiers.\nSee http://llama.mshri.on.ca/synergizer/doc/ for the details of usage. ", appendLF = TRUE)
See section ‘Good practice’ in '?.onAttach'.
available_authorities: no visible global function definition for
‘getCurlHandle’
available_authorities: no visible global function definition for
‘curlSetOpt’
available_authorities: no visible global function definition for
‘basicTextGatherer’
available_authorities: no visible global function definition for
‘basicHeaderGatherer’
available_authorities: no visible global function definition for
‘curlPerform’
available_authorities: no visible global function definition for
‘fromJSON’
available_domains: no visible global function definition for
‘getCurlHandle’
available_domains: no visible global function definition for
‘curlSetOpt’
available_domains: no visible global function definition for
‘basicTextGatherer’
available_domains: no visible global function definition for
‘basicHeaderGatherer’
available_domains: no visible global function definition for
‘curlPerform’
available_domains: no visible global function definition for ‘fromJSON’
available_ranges: no visible global function definition for
‘getCurlHandle’
available_ranges: no visible global function definition for
‘curlSetOpt’
available_ranges: no visible global function definition for
‘basicTextGatherer’
available_ranges: no visible global function definition for
‘basicHeaderGatherer’
available_ranges: no visible global function definition for
‘curlPerform’
available_ranges: no visible global function definition for ‘fromJSON’
available_species: no visible global function definition for
‘getCurlHandle’
available_species: no visible global function definition for
‘curlSetOpt’
available_species: no visible global function definition for
‘basicTextGatherer’
available_species: no visible global function definition for
‘basicHeaderGatherer’
available_species: no visible global function definition for
‘curlPerform’
available_species: no visible global function definition for ‘fromJSON’
server_version: no visible global function definition for
‘getCurlHandle’
server_version: no visible global function definition for ‘curlSetOpt’
server_version: no visible global function definition for
‘basicTextGatherer’
server_version: no visible global function definition for
‘basicHeaderGatherer’
server_version: no visible global function definition for ‘curlPerform’
server_version: no visible global function definition for ‘fromJSON’
synergizer: no visible global function definition for
‘basicTextGatherer’
synergizer: no visible global function definition for
‘basicHeaderGatherer’
synergizer: no visible global function definition for ‘curlPerform’
synergizer: no visible global function definition for ‘getCurlHandle’
synergizer: no visible global function definition for ‘toJSON’
synergizer: no visible global function definition for ‘fromJSON’
Undefined global functions or variables:
basicHeaderGatherer basicTextGatherer curlPerform curlSetOpt fromJSON
getCurlHandle toJSON
Flavor: r-devel-osx-x86_64-clang
Version: 0.2
Check: R code for possible problems
Result: NOTE
File ‘SynergizeR/R/zzz.r’:
.onLoad calls:
packageStartupMessage("\nSynergizeR\n", appendLF = TRUE)
packageStartupMessage("IMPORTANT: The Synergizer has been designed for bulk translation of identifiers.\nSee http://llama.mshri.on.ca/synergizer/doc/ for the details of usage. ", appendLF = TRUE)
See section ‘Good practice’ in '?.onAttach'.
available_authorities: no visible global function definition for
‘getCurlHandle’
available_authorities: no visible global function definition for
‘curlSetOpt’
available_authorities: no visible global function definition for
‘basicTextGatherer’
available_authorities: no visible global function definition for
‘basicHeaderGatherer’
available_authorities: no visible global function definition for
‘curlPerform’
available_authorities: no visible global function definition for
‘fromJSON’
available_domains: no visible global function definition for
‘getCurlHandle’
available_domains: no visible global function definition for
‘curlSetOpt’
available_domains: no visible global function definition for
‘basicTextGatherer’
available_domains: no visible global function definition for
‘basicHeaderGatherer’
available_domains: no visible global function definition for
‘curlPerform’
available_domains: no visible global function definition for ‘fromJSON’
available_ranges: no visible global function definition for
‘getCurlHandle’
available_ranges: no visible global function definition for
‘curlSetOpt’
available_ranges: no visible global function definition for
‘basicTextGatherer’
available_ranges: no visible global function definition for
‘basicHeaderGatherer’
available_ranges: no visible global function definition for
‘curlPerform’
available_ranges: no visible global function definition for ‘fromJSON’
available_species: no visible global function definition for
‘getCurlHandle’
available_species: no visible global function definition for
‘curlSetOpt’
available_species: no visible global function definition for
‘basicTextGatherer’
available_species: no visible global function definition for
‘basicHeaderGatherer’
available_species: no visible global function definition for
‘curlPerform’
available_species: no visible global function definition for ‘fromJSON’
server_version: no visible global function definition for
‘getCurlHandle’
server_version: no visible global function definition for ‘curlSetOpt’
server_version: no visible global function definition for
‘basicTextGatherer’
server_version: no visible global function definition for
‘basicHeaderGatherer’
server_version: no visible global function definition for ‘curlPerform’
server_version: no visible global function definition for ‘fromJSON’
synergizer: no visible global function definition for
‘basicTextGatherer’
synergizer: no visible global function definition for
‘basicHeaderGatherer’
synergizer: no visible global function definition for ‘curlPerform’
synergizer: no visible global function definition for ‘getCurlHandle’
synergizer: no visible global function definition for ‘toJSON’
synergizer: no visible global function definition for ‘fromJSON’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64